Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017734

Physical Location & Seq

Genomic Coordinates Forward (+)

41373621 .. 41374574

Gene Structure 954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45656

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAAGTCTCTAATTCAATTATGTTTTCAAACAAACAATCTTTCTGGCTCAATCCCTCCATCTCTAGGTGATCTCACAAACCTTACCCATCTATTTCTCTACCAAAATAACCTATCCGGAATCATTCCTAAAGAGCTTGGGAATCTGATTTCTCTTGTGGACCTAGAGTTGGAGGAGAATCAACTCAGTGGTTCCATTCCCGCTTCAGTTGGTGACTTGAGTAACTTAGAATTTTTCCCCATCCCCAAAGAGATTGGGAATCTCAGGAAGTTGAAGGGTCTCTTCTTAGATACTAATAGTTTTTCTGGTCATTTACCCCAATATATTTGCATTGGTAAATCTCTGCAAAATTTTTCGGTAAACAACAACCATTTGGTAGGTCCAGTCCCCAAAACCTTGAAAACTTGCAAGAGCTTACTGAGAGTCCATCTTCAAGGGGACAATTTGACAGGCAATATATCAGAAGTCTTTGGTGCCTATCCAAATCTTCAATATATAGATATTAGCCACAACAACTTCTACGGTGAAATCTCACCCATGTGGGGGCAATGTCCTCAGTTAGCGACCCTAAGAATTGCAGGAAACAACCTTATTGGTAGCATACCACCTGAGCTCGGAAATGCAACCCAAATTCATAAACTTGATCTTTCCTCAAATCGTTTAGTTGGGGTGATTCCAAATGAGATTGGGAGGTTAACAGCTTTGCTGGATCTGATATTGAATAACAATCAACTTTGGGGTCGCATACCATCAGACTTAAAAACATTGATGGATCTTGAATATCTTGACATGTCCACCAACAAATTCAATGTCTCAATTCCAAGCATTTTAGGTGACTTGTCCAAATTACACCACTTGAATTTGAGCAACAATAAGTTCCGCCAAGAAATTCCAATTCAATTGAGCAGTTTAGTTCACCTGTCTGAGCTAGACTTGAGTCATAATTCACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

35.0

Weight (kDa)

6.04

Isoelectric Point (pI)

29.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	161 - 202	9.6e-06	Leucine Rich repeats (2 copies)
LRR_8	PF13855	185 - 245	2.4e-06	Leucine rich repeat
LRR_14	PF23598	189 - 309	2.1e-07	Leucine-rich repeat region
LRR_8	PF13855	259 - 317	5.6e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017734)

Species	Orthologous Gene IDs
malus_domestica	MD09G1153500.v1.1
pyrus_communis	pycom10g28400
rosa_chinensis	RchiOBHm_Chr3g0493871 RchiOBHm_Chr4g0409881 RchiOBHm_Chr4g0409891
rosa_laevigata	RLG00000000734 RLG00000000735 RLG00000029182
rosa_multiflora	Rmu_sc0000063.1_g000037 Rmu_sc0000987.1_g000018 Rmu_sc0003622.1_g000007
rosa_rugosa	Rorug04G0097500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	473
AccIII	TCCGGA	1 cut(s)	116
AciI	CCGC	2 cut(s)	201, 880
AclWI	GGATC	2 cut(s)	717, 780
AcsI	RAATTY	6 cut(s)	230, 349, 630, 803, 859, 888
AcuI	CTGAAG	1 cut(s)	189
AfiI	CCNNNNNNNGG	5 cut(s)	65, 169, 542, 543, 614
AflIII	ACRYGT	1 cut(s)	789
AleI	CACNNNNGTG	1 cut(s)	538
AluBI	AGCT	5 cut(s)	136, 414, 613, 701, 928
AluI	AGCT	5 cut(s)	136, 414, 613, 701, 928
Alw21I	GWGCWC	1 cut(s)	615
Alw26I	GTCTC	3 cut(s)	12, 284, 817
AlwI	GGATC	2 cut(s)	717, 780
Aor13HI	TCCGGA	1 cut(s)	116
ApoI	RAATTY	6 cut(s)	230, 349, 630, 803, 859, 888
ArsI	GACNNNNNNTTYG	2 cut(s)	795, 827
AspS9I	GGNCC	2 cut(s)	160, 380
AsuHPI	GGTGA	7 cut(s)	80, 224, 525, 536, 682, 845, 908
AvaII	GGWCC	2 cut(s)	160, 380
BanI	GGYRCC	1 cut(s)	473
BanII	GRGCYC	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	615
BccI	CCATC	6 cut(s)	67, 96, 248, 435, 757, 763
BcoDI	GTCTC	3 cut(s)	12, 284, 817
BfaI	CTAG	3 cut(s)	65, 164, 929
BfmI	CTRYAG	1 cut(s)	950
Bme18I	GGWCC	2 cut(s)	160, 380
BmgT120I	GGNCC	2 cut(s)	160, 380
BmiI	GGNNCC	2 cut(s)	193, 475
BoxI	GACNNNNGTC	1 cut(s)	936
Bpu10I	CCTNAGC	1 cut(s)	609
BpuEI	CTTGAG	1 cut(s)	238
BsaI	GGTCTC	1 cut(s)	284
BsaWI	WCCGGW	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 169, 542, 543, 614
Bse1I	ACTGG	1 cut(s)	383
Bse3DI	GCAATG	1 cut(s)	554
BseAI	TCCGGA	1 cut(s)	116
BseGI	GGATG	1 cut(s)	240
BseLI	CCNNNNNNNGG	5 cut(s)	65, 169, 542, 543, 614
BseMI	GCAATG	1 cut(s)	554
BseMII	CTCAG	6 cut(s)	199, 277, 410, 569, 600, 915
BseNI	ACTGG	1 cut(s)	383
BseRI	GAGGAG	1 cut(s)	188
BshNI	GGYRCC	1 cut(s)	473
BsiHKAI	GWGCWC	1 cut(s)	615
BsiSI	CCGG	1 cut(s)	117
BslFI	GGGAC	2 cut(s)	371, 452
BslI	CCNNNNNNNGG	5 cut(s)	65, 169, 542, 543, 614
BsmAI	GTCTC	3 cut(s)	12, 284, 817
BsmFI	GGGAC	2 cut(s)	371, 452
Bso31I	GGTCTC	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	615
Bsp13I	TCCGGA	1 cut(s)	116
Bsp143I	GATC	4 cut(s)	70, 643, 709, 772
BspACI	CCGC	2 cut(s)	201, 880
BspCNI	CTCAG	6 cut(s)	198, 276, 411, 568, 601, 916
BspEI	TCCGGA	1 cut(s)	116
BspLI	GGNNCC	2 cut(s)	193, 475
BspPI	GGATC	2 cut(s)	717, 780
BspT107I	GGYRCC	1 cut(s)	473
BspTNI	GGTCTC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	554
BsrI	ACTGG	1 cut(s)	383
BssMI	GATC	4 cut(s)	70, 643, 709, 772
Bst4CI	ACNGT	1 cut(s)	524
Bst6I	CTCTTC	1 cut(s)	287
BstDEI	CTNAG	9 cut(s)	185, 226, 263, 286, 419, 555, 569, 609, 924
BstF5I	GGATG	1 cut(s)	240
BstKTI	GATC	4 cut(s)	73, 646, 712, 775
BstMAI	GTCTC	3 cut(s)	12, 284, 817
BstMBI	GATC	4 cut(s)	70, 643, 709, 772
BstNSI	RCATGY	1 cut(s)	793
BstPAI	GACNNNNGTC	1 cut(s)	936
BstSFI	CTRYAG	1 cut(s)	950
BstX2I	RGATCY	2 cut(s)	709, 772
BstYI	RGATCY	2 cut(s)	709, 772
BtsCI	GGATG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	193
Cfr13I	GGNCC	2 cut(s)	160, 380
CviAII	CATG	2 cut(s)	538, 790
CviJI	RGCY	7 cut(s)	48, 136, 414, 507, 613, 701, 928
CviKI_1	RGCY	7 cut(s)	48, 136, 414, 507, 613, 701, 928
DdeI	CTNAG	9 cut(s)	185, 226, 263, 286, 419, 555, 569, 609, 924
DpnI	GATC	4 cut(s)	72, 645, 711, 774
DpnII	GATC	4 cut(s)	70, 643, 709, 772
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
EciI	GGCGGA	1 cut(s)	869
Ecl136II	GAGCTC	1 cut(s)	613
Eco24I	GRGCYC	1 cut(s)	615
Eco31I	GGTCTC	1 cut(s)	284
Eco47I	GGWCC	2 cut(s)	160, 380
Eco53kI	GAGCTC	1 cut(s)	613
Eco57I	CTGAAG	1 cut(s)	189
EcoICRI	GAGCTC	1 cut(s)	613
EcoT38I	GRGCYC	1 cut(s)	615
FaeI	CATG	2 cut(s)	541, 793
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FaqI	GGGAC	2 cut(s)	371, 452
FatI	CATG	2 cut(s)	537, 789
FauI	CCCGC	1 cut(s)	208
FokI	GGATG	1 cut(s)	227
FriOI	GRGCYC	1 cut(s)	615
FspBI	CTAG	3 cut(s)	65, 164, 929
HapII	CCGG	1 cut(s)	117
Hin1II	CATG	2 cut(s)	541, 793
HincII	GTYRAC	1 cut(s)	696
HindII	GTYRAC	1 cut(s)	696
HinfI	GANTC	7 cut(s)	120, 142, 178, 259, 423, 673, 937
HpaI	GTTAAC	1 cut(s)	696
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	7 cut(s)	80, 224, 525, 536, 682, 845, 908
Hpy166II	GTNNAC	5 cut(s)	160, 361, 696, 795, 916
Hpy188I	TCNGA	6 cut(s)	147, 463, 617, 714, 754, 925
Hpy188III	TCNNGA	4 cut(s)	117, 265, 776, 785
Hpy8I	GTNNAC	5 cut(s)	160, 361, 696, 795, 916
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4V	TGCA	5 cut(s)	330, 346, 408, 578, 623
HpyF3I	CTNAG	9 cut(s)	185, 226, 263, 286, 419, 555, 569, 609, 924
Hsp92II	CATG	2 cut(s)	541, 793
Kpn2I	TCCGGA	1 cut(s)	116
KspAI	GTTAAC	1 cut(s)	696
Kzo9I	GATC	4 cut(s)	70, 643, 709, 772
MaeI	CTAG	3 cut(s)	65, 164, 929
MaeIII	GTNAC	3 cut(s)	212, 221, 833
MalI	GATC	4 cut(s)	72, 645, 711, 774
MboI	GATC	4 cut(s)	70, 643, 709, 772
MboII	GAAGA	3 cut(s)	274, 422, 479
MfeI	CAATTG	1 cut(s)	899
MflI	RGATCY	2 cut(s)	709, 772
MhlI	GDGCHC	1 cut(s)	615
MlyI	GAGTC	2 cut(s)	432, 946
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	5 cut(s)	66, 166, 564, 661, 684
MroI	TCCGGA	1 cut(s)	116
MseI	TTAA	2 cut(s)	695, 758
MslI	CAYNNNNRTG	1 cut(s)	538
MspI	CCGG	1 cut(s)	117
MunI	CAATTG	1 cut(s)	899
NdeII	GATC	4 cut(s)	70, 643, 709, 772
NlaIII	CATG	2 cut(s)	541, 793
NlaIV	GGNNCC	2 cut(s)	193, 475
NmuCI	GTSAC	2 cut(s)	212, 833
NspI	RCATGY	1 cut(s)	793
OliI	CACNNNNGTG	1 cut(s)	538
PciI	ACATGT	1 cut(s)	789
PfeI	GAWTC	5 cut(s)	120, 142, 178, 259, 673
PleI	GAGTC	2 cut(s)	431, 945
PpsI	GAGTC	2 cut(s)	431, 945
PscI	ACATGT	1 cut(s)	789
PshAI	GACNNNNGTC	1 cut(s)	936
Psp124BI	GAGCTC	1 cut(s)	615
PspN4I	GGNNCC	2 cut(s)	193, 475
PspPI	GGNCC	2 cut(s)	160, 380
PsuI	RGATCY	2 cut(s)	709, 772
RseI	CAYNNNNRTG	1 cut(s)	538
SacI	GAGCTC	1 cut(s)	615
SaqAI	TTAA	2 cut(s)	695, 758
Sau3AI	GATC	4 cut(s)	70, 643, 709, 772
Sau96I	GGNCC	2 cut(s)	160, 380
SchI	GAGTC	2 cut(s)	432, 946
SduI	GDGCHC	1 cut(s)	615
SfcI	CTRYAG	1 cut(s)	950
SinI	GGWCC	2 cut(s)	160, 380
SmiMI	CAYNNNNRTG	1 cut(s)	538
SmlI	CTYRAG	2 cut(s)	217, 934
SmoI	CTYRAG	2 cut(s)	217, 934
SsiI	CCGC	2 cut(s)	201, 880
SspMI	CTAG	3 cut(s)	65, 164, 929
SstI	GAGCTC	1 cut(s)	615
TaaI	ACNGT	1 cut(s)	524
TfiI	GAWTC	5 cut(s)	120, 142, 178, 259, 673
Tru1I	TTAA	2 cut(s)	695, 758
Tru9I	TTAA	2 cut(s)	695, 758
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	2 cut(s)	212, 833
Tsp45I	GTSAC	2 cut(s)	212, 833
TspDTI	ATGAA	2 cut(s)	17, 623
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	2 cut(s)	160, 380
XapI	RAATTY	6 cut(s)	230, 349, 630, 803, 859, 888
XceI	RCATGY	1 cut(s)	793
XspI	CTAG	3 cut(s)	65, 164, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.