Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017734

Physical Location & Seq

Genomic Coordinates Reverse (-)

33489622 .. 33492136

Gene Structure 2515 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38085

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGTTCAATTTCGACAACACTGGGTGATCTTACCAACCTTACCACTCTTTTATCTTTATTCAAATAATCTCTCTGGCACCATTCCAAAAGAGTTAGGGAACTTGAAATCTTTGGTGGATCTAGAGCTGAACACTAATCAACTCAGTGGTTCAATTTCGAAAATATTCGACGAAATCCGAACTTCGCTGCCGAACGCCGAACTCCGAACTCCGAACGCCACTCCCTCATCCCTCAGACTCTCAGTCTCCGGCCAGCTCTCTAGCTCTCCAGCTCGCCGGGCTTTCTGGGTTAGATTTTGGGTTCGATTTATGGGTTCAAGGCTTCTAGCTCGAAGCAGTTCTGTAACCTTGTTTCCAGCACCATTCCAAGAGTTAGGAAGCCTGAAATCTTTGGTGGAACTATCCTTGTGCACCAATCACCTCTATGGTTCAATTTCGAAAACATTGGGTGATCTAACCAACCTTACCCTTCTTTATCTCTATTCAAATAATCTTTCTGGCAATATTCCGATGGAGATAGGGAACTTGAAATCTTTGGTGGATCTACAATTGAACATGAATCAACTTAGTGGTTCAATTCCGACAACATTAAGTGACTTGCAAAACTTGAAATTCTTATATCTCCTTGACAACCAACTTTCTGGCCCGATCCCTCACAAGATAGCAAATATCCAAAAGTTGACAGAATTGCAATTAAGTGGAAACAAATTTTCTGGTCATTTGCCCCAAAACATATGCCAAGGTAGATCACTCACATACTTTTCAGCTTCCTGTAATCACCTGAGTGGTCCAATCCCCATAAGCTTGAAAACCTGTACTGGCTTACTTAGAGTCCGTCTTGAAGAGAACCAGTTGACAGGTAACGTATCCGAAGACTGGTGTGTTTATCATAGTCTCAGATTTAAAGATTTAAGTAACAATCAACTTAATGGTGAATTCTCACCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

316

Amino Acids

35.19

Weight (kDa)

9.1

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	131 - 235	1.6e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017734)

Species	Orthologous Gene IDs
malus_domestica	MD09G1153500.v1.1
pyrus_communis	pycom10g28400
rosa_chinensis	RchiOBHm_Chr3g0493871 RchiOBHm_Chr4g0409881 RchiOBHm_Chr4g0409891
rosa_laevigata	RLG00000000734 RLG00000000735 RLG00000029182
rosa_multiflora	Rmu_sc0000063.1_g000037 Rmu_sc0000987.1_g000018 Rmu_sc0003622.1_g000007
rosa_rugosa	Rorug04G0097500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AclWI	GGATC	3 cut(s)	126, 549, 643
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	3 cut(s)	611, 707, 935
AdeI	CACNNNGTG	1 cut(s)	25
AfaI	GTAC	1 cut(s)	817
AfiI	CCNNNNNNNGG	1 cut(s)	876
AhdI	GACNNNNNGTC	1 cut(s)	242
AleI	CACNNNNGTG	1 cut(s)	783
AluBI	AGCT	7 cut(s)	127, 256, 264, 272, 329, 767, 804
AluI	AGCT	7 cut(s)	127, 256, 264, 272, 329, 767, 804
Alw21I	GWGCWC	1 cut(s)	413
Alw26I	GTCTC	2 cut(s)	250, 899
Alw44I	GTGCAC	1 cut(s)	409
AlwI	GGATC	3 cut(s)	126, 549, 643
AoxI	GGCC	2 cut(s)	250, 643
ApaLI	GTGCAC	1 cut(s)	409
ApeKI	GCWGC	1 cut(s)	187
ApoI	RAATTY	3 cut(s)	611, 707, 935
Asp700I	GAANNNNTTC	2 cut(s)	164, 337
AspS9I	GGNCC	2 cut(s)	644, 788
AsuC2I	CCSGG	1 cut(s)	278
AsuHPI	GGTGA	6 cut(s)	37, 410, 461, 770, 933, 944
AsuII	TTCGAA	2 cut(s)	158, 437
AvaII	GGWCC	1 cut(s)	788
BaeGI	GKGCMC	1 cut(s)	413
BanI	GGYRCC	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	879
Bbv12I	GWGCWC	1 cut(s)	413
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	1 cut(s)	505
BciVI	GTATCC	1 cut(s)	877
BcnI	CCSGG	1 cut(s)	278
BcoDI	GTCTC	2 cut(s)	250, 899
BfaI	CTAG	3 cut(s)	122, 261, 326
BfuI	GTATCC	1 cut(s)	877
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	1 cut(s)	788
BmeRI	GACNNNNNGTC	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	644, 788
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	278
BmrI	ACTGGG	1 cut(s)	31
BmuI	ACTGGG	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	879
BpmI	CTGGAG	1 cut(s)	252
Bpu14I	TTCGAA	2 cut(s)	158, 437
BpuMI	CCSGG	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	739
Bsc4I	CCNNNNNNNGG	1 cut(s)	876
Bse1I	ACTGG	4 cut(s)	26, 823, 850, 881
BseDI	CCNNGG	1 cut(s)	739
BseGI	GGATG	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	876
BseMII	CTCAG	5 cut(s)	157, 247, 255, 773, 910
BseNI	ACTGG	4 cut(s)	26, 823, 850, 881
BseSI	GKGCMC	1 cut(s)	413
BseXI	GCAGC	1 cut(s)	174
BshFI	GGCC	2 cut(s)	252, 645
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	413
BsiSI	CCGG	2 cut(s)	249, 277
BslI	CCNNNNNNNGG	1 cut(s)	876
BsmAI	GTCTC	2 cut(s)	250, 899
BsnI	GGCC	2 cut(s)	252, 645
Bsp119I	TTCGAA	2 cut(s)	158, 437
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp143I	GATC	6 cut(s)	27, 118, 451, 541, 648, 746
BspANI	GGCC	2 cut(s)	252, 645
BspCNI	CTCAG	5 cut(s)	156, 246, 254, 774, 909
BspLI	GGNNCC	1 cut(s)	79
BspPI	GGATC	3 cut(s)	126, 549, 643
BspT104I	TTCGAA	2 cut(s)	158, 437
BspT107I	GGYRCC	1 cut(s)	77
BsrI	ACTGG	4 cut(s)	26, 823, 850, 881
BssECI	CCNNGG	1 cut(s)	739
BssMI	GATC	6 cut(s)	27, 118, 451, 541, 648, 746
BssT1I	CCWWGG	1 cut(s)	739
Bst6I	CTCTTC	1 cut(s)	837
BstBI	TTCGAA	2 cut(s)	158, 437
BstC8I	GCNNGC	2 cut(s)	254, 274
BstDEI	CTNAG	7 cut(s)	143, 233, 241, 566, 782, 827, 896
BstF5I	GGATG	1 cut(s)	227
BstKTI	GATC	6 cut(s)	30, 121, 454, 544, 651, 749
BstMAI	GTCTC	2 cut(s)	250, 899
BstMBI	GATC	6 cut(s)	27, 118, 451, 541, 648, 746
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstSLI	GKGCMC	1 cut(s)	413
BstV1I	GCAGC	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	879
BstX2I	RGATCY	2 cut(s)	118, 541
BstXI	CCANNNNNNTGG	1 cut(s)	641
BstYI	RGATCY	2 cut(s)	118, 541
BsuI	GTATCC	1 cut(s)	877
BsuRI	GGCC	2 cut(s)	252, 645
BtsCI	GGATG	1 cut(s)	227
BtsIMutI	CAGTG	2 cut(s)	19, 151
Cac8I	GCNNGC	2 cut(s)	254, 274
Cfr13I	GGNCC	2 cut(s)	644, 788
Csp6I	GTAC	1 cut(s)	816
CviAII	CATG	1 cut(s)	556
CviQI	GTAC	1 cut(s)	816
DdeI	CTNAG	7 cut(s)	143, 233, 241, 566, 782, 827, 896
DpnI	GATC	6 cut(s)	29, 120, 453, 543, 650, 748
DpnII	GATC	6 cut(s)	27, 118, 451, 541, 648, 746
DraI	TTTAAA	1 cut(s)	904
DraIII	CACNNNGTG	1 cut(s)	25
DriI	GACNNNNNGTC	1 cut(s)	242
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	837
Eam1105I	GACNNNNNGTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	837
Eco130I	CCWWGG	1 cut(s)	739
Eco47I	GGWCC	1 cut(s)	788
EcoRI	GAATTC	1 cut(s)	935
EcoT14I	CCWWGG	1 cut(s)	739
ErhI	CCWWGG	1 cut(s)	739
FaeI	CATG	1 cut(s)	559
FaiI	YATR	9 cut(s)	311, 426, 557, 619, 734, 736, 757, 800, 891
FatI	CATG	1 cut(s)	555
FauNDI	CATATG	1 cut(s)	734
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	188
FspBI	CTAG	3 cut(s)	122, 261, 326
GluI	GCNGC	1 cut(s)	188
GsuI	CTGGAG	1 cut(s)	252
HaeIII	GGCC	2 cut(s)	252, 645
HapII	CCGG	2 cut(s)	249, 277
Hin1II	CATG	1 cut(s)	559
HincII	GTYRAC	2 cut(s)	681, 855
HindII	GTYRAC	2 cut(s)	681, 855
HindIII	AAGCTT	1 cut(s)	802
HinfI	GANTC	3 cut(s)	237, 559, 831
HpaII	CCGG	2 cut(s)	249, 277
HphI	GGTGA	6 cut(s)	37, 410, 461, 770, 933, 944
Hpy166II	GTNNAC	3 cut(s)	411, 681, 855
Hpy188I	TCNGA	8 cut(s)	179, 206, 213, 236, 510, 582, 871, 899
Hpy188III	TCNNGA	2 cut(s)	122, 839
Hpy8I	GTNNAC	3 cut(s)	411, 681, 855
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	479
HpyCH4IV	ACGT	1 cut(s)	864
HpyCH4V	TGCA	3 cut(s)	411, 601, 691
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	7 cut(s)	143, 233, 241, 566, 782, 827, 896
HpySE526I	ACGT	1 cut(s)	864
Hsp92II	CATG	1 cut(s)	559
Kzo9I	GATC	6 cut(s)	27, 118, 451, 541, 648, 746
Lsp1109I	GCAGC	1 cut(s)	174
MaeI	CTAG	3 cut(s)	122, 261, 326
MaeII	ACGT	1 cut(s)	864
MaeIII	GTNAC	4 cut(s)	343, 593, 860, 914
MalI	GATC	6 cut(s)	29, 120, 453, 543, 650, 748
MboI	GATC	6 cut(s)	27, 118, 451, 541, 648, 746
MboII	GAAGA	2 cut(s)	854, 884
MfeI	CAATTG	1 cut(s)	548
MflI	RGATCY	2 cut(s)	118, 541
MhlI	GDGCHC	1 cut(s)	413
MlyI	GAGTC	2 cut(s)	231, 840
MmeI	TCCRAC	1 cut(s)	605
MnlI	CCTC	4 cut(s)	235, 242, 431, 663
MroXI	GAANNNNTTC	2 cut(s)	164, 337
MseI	TTAA	5 cut(s)	590, 695, 903, 911, 927
MslI	CAYNNNNRTG	2 cut(s)	423, 783
MspI	CCGG	2 cut(s)	249, 277
MspR9I	CCNGG	1 cut(s)	278
MunI	CAATTG	1 cut(s)	548
MwoI	GCNNNNNNNGC	1 cut(s)	278
NciI	CCSGG	1 cut(s)	278
NdeI	CATATG	1 cut(s)	734
NdeII	GATC	6 cut(s)	27, 118, 451, 541, 648, 746
NlaIII	CATG	1 cut(s)	559
NlaIV	GGNNCC	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	593
NspV	TTCGAA	2 cut(s)	158, 437
OliI	CACNNNNGTG	1 cut(s)	783
PdmI	GAANNNNTTC	2 cut(s)	164, 337
PfeI	GAWTC	1 cut(s)	559
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	2 cut(s)	231, 839
PpsI	GAGTC	2 cut(s)	231, 839
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	2 cut(s)	644, 788
PsuI	RGATCY	2 cut(s)	118, 541
RsaI	GTAC	1 cut(s)	817
RsaNI	GTAC	1 cut(s)	816
RseI	CAYNNNNRTG	2 cut(s)	423, 783
SaqAI	TTAA	5 cut(s)	590, 695, 903, 911, 927
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	6 cut(s)	27, 118, 451, 541, 648, 746
Sau96I	GGNCC	2 cut(s)	644, 788
SchI	GAGTC	2 cut(s)	231, 840
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	413
SfuI	TTCGAA	2 cut(s)	158, 437
SinI	GGWCC	1 cut(s)	788
SmiMI	CAYNNNNRTG	2 cut(s)	423, 783
SspI	AATATT	2 cut(s)	165, 505
SspMI	CTAG	3 cut(s)	122, 261, 326
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	739
TaiI	ACGT	1 cut(s)	867
TaqI	TCGA	6 cut(s)	13, 158, 168, 304, 331, 437
TatI	WGTACW	1 cut(s)	815
TfiI	GAWTC	1 cut(s)	559
Tru1I	TTAA	5 cut(s)	590, 695, 903, 911, 927
Tru9I	TTAA	5 cut(s)	590, 695, 903, 911, 927
TscAI	CASTG	2 cut(s)	26, 151
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	1 cut(s)	572
TspGWI	ACGGA	1 cut(s)	824
TspRI	CASTG	2 cut(s)	26, 151
VneI	GTGCAC	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	788
XapI	RAATTY	3 cut(s)	611, 707, 935
XbaI	TCTAGA	1 cut(s)	121
XmnI	GAANNNNTTC	2 cut(s)	164, 337
XspI	CTAG	3 cut(s)	122, 261, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.