RLG00000029182

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0017734
Physical Location & Seq
Reverse (-)
34149169 .. 34150821
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029182

Sequence Viewer

Length: 1653 bp
ATGGATATAGGAAACCTGAAATCATTGATGGATCTACGGTTGAGCTTCAGTCAACTCAGTGGTTCAATTCAGACAACACTGGGTGATCTGACCAACCTTGCCACTCTCTATCTCGGTTCCAATAATCTTTTTGGCACTATTCCTATAGAGATAGGAAACCTGAAATCATTGGTGTATCTAGAGTTGGGCACCAATCAACTCAGTGGTTCCATTCCGACAACATTAGGTAATTTGACCAACCTTACCAGTCTCTATCTCTTTGAAAATAATCTTTCTGGCACTATTCCAATGGAGATAGGAAACTTGAAATCATTGGTGTATCTAGAGTTGGGCACCAATCAAGTCAGTGGTTCCATTCCACCAACACTAGGGGATCTGACCAACCTTACCACTCTCTATCTCTTTGAAAATAATCTTTCTAGCACTATTCCAATGGAGATAGGAAACTTGAAATCATTAGTGGATCTAGAGTTGGGCAACAATCGTCTCAGTGGTTCAATTCCGACAGCATTATGTAATTTGACTAACCTTATCACTCTCTATCTCTATACAAATAATCTTTCTGGCACTATTCCTTCGAAGATAGGAAACCTGAAATCTTTGGTGGATCTAGAGTTGGGCACCAATCAACTCAGTGGTTCAATTCCGACAATACTGGGGGATCTGACCAACCTTACCACTCTCTATCTCTATACAAATAATCTTTCTAGCACTATTCCAATGGAGATAGGAAACTTGAAATCATTAGTGGATCAAGAGTTGGGCAACAATCGTCTCAGTGGTTCAATTCTGACAACATTATGTAATTTGACCAACCTTACCATTCTCTATCTCTATACAAATCATCTTTCTGGCACTATTCCTATGGAGATAGGAAACCTGAAATCTTTGGTGGATCTACAGTTGGGCACCAATCAACTCAGTGGTTCAATTCCGACAACACTAGGGGATCTGACCAACCTTACTACTCTCTATCTCAATACAAATAATCTTTCTGGCCCTATTCCTATGGAGATAGAAAACCTGAAATCATTAGTGGATCTAAAGTTGAGCGAAAATCAACTCAGTGCTTCAATTCCAGCTTCATTATGTGACTTGCATAACTTGAATTTCTTATACCTCCGTGACAACCAACTTTCTGGCTCTATCCCTCCAAAGCTAGGAAATATCAAGAAATTGATCGAATTGGAATTAGATACAAACCAATTTAATTTTCTGGTTATTTGCCGACCTGGATCACTTAGAAAGTTTTCAGCACATACCAACCATCTAATTGGCCCAATCCCAAAAAGCTTAAAAACCTGCACAAGCTTATTCAGAGTGCATCTTCATGGGAACCAATTGACTGGCAATATATCTGAAGGCTTTGGTGTTTATCCAAGTCTCAATTTTATGGATTTGAGCAACAATCAACTTTATGGTGAAATCTCACCAAATTGGGAATTGGGCCTAAATTTAACAACCCTACTTATAGCTGTAAACAAACTTACTGGTTCTATACCAGCTGAGATTGGAAACGCAACCCAAATTCATGAGCTGGATCTTGCTTCAAATGGTTTAGTCGGGACAATTCCAAAGCAGTTTGGGGGATTAAATTCAATGGTGAAGCTGATGTTGGATGATAACCAACTTTCAGGTCGTGTCCCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

551

Amino Acids

59.38

Weight (kDa)

5.0

Isoelectric Point (pI)

8.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 20 - 134 3.1e-11 Leucine-rich repeat region
LRR_14 PF23598 94 - 184 4.8e-11 Leucine-rich repeat region
LRR_14 PF23598 140 - 233 9.2e-12 Leucine-rich repeat region
LRR_14 PF23598 189 - 281 3e-09 Leucine-rich repeat region
LRR_14 PF23598 233 - 329 2.1e-08 Leucine-rich repeat region
LRR_14 PF23598 262 - 471 5.8e-15 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1310
AccB1I GGYRCC 4 cut(s) 188, 332, 620, 908
AcsI RAATTY 4 cut(s) 1108, 1453, 1527, 1594
AcuI CTGAAG 2 cut(s) 31, 1380
AdeI CACNNNGTG 1 cut(s) 83
AfiI CCNNNNNNNGG 2 cut(s) 368, 1160
AjnI CCWGG 1 cut(s) 1231
AjuI GAANNNNNNNTTGG 4 cut(s) 1197, 1229, 1598, 1630
AluBI AGCT 9 cut(s) 45, 1082, 1159, 1293, 1311, 1475, 1505, 1537, 1609
AluI AGCT 9 cut(s) 45, 1082, 1159, 1293, 1311, 1475, 1505, 1537, 1609
Alw26I GTCTC 4 cut(s) 254, 491, 779, 1388
AoxI GGCC 3 cut(s) 997, 1276, 1447
ApoI RAATTY 4 cut(s) 1108, 1453, 1527, 1594
Asp700I GAANNNNTTC 1 cut(s) 1249
AspS9I GGNCC 3 cut(s) 998, 1277, 1447
AsuHPI GGTGA 4 cut(s) 95, 1422, 1433, 1615
AsuII TTCGAA 1 cut(s) 578
BaeGI GKGCMC 4 cut(s) 191, 335, 623, 911
BanI GGYRCC 4 cut(s) 188, 332, 620, 908
BccI CCATC 2 cut(s) 22, 1275
BciT130I CCWGG 1 cut(s) 1233
BcoDI GTCTC 4 cut(s) 254, 491, 779, 1388
BfaI CTAG 9 cut(s) 179, 323, 368, 420, 467, 611, 708, 944, 1160
BfmI CTRYAG 2 cut(s) 144, 899
BfuAI ACCTGC 1 cut(s) 1310
Bme1390I CCNGG 1 cut(s) 1233
BmgT120I GGNCC 3 cut(s) 998, 1277, 1447
BmiI GGNNCC 8 cut(s) 118, 190, 208, 334, 352, 622, 910, 1337
BmrFI CCNGG 1 cut(s) 1233
BmrI ACTGGG 2 cut(s) 89, 665
BmsI GCATC 1 cut(s) 1333
BmuI ACTGGG 2 cut(s) 89, 665
Bpu14I TTCGAA 1 cut(s) 578
Bsc4I CCNNNNNNNGG 2 cut(s) 368, 1160
Bse1I ACTGG 5 cut(s) 84, 246, 660, 1351, 1495
BseBI CCWGG 1 cut(s) 1233
BseGI GGATG 1 cut(s) 1624
BseLI CCNNNNNNNGG 2 cut(s) 368, 1160
BseMII CTCAG 8 cut(s) 70, 214, 502, 646, 790, 934, 1078, 1497
BseNI ACTGG 5 cut(s) 84, 246, 660, 1351, 1495
BseSI GKGCMC 4 cut(s) 191, 335, 623, 911
BsgI GTGCAG 1 cut(s) 1288
BshFI GGCC 3 cut(s) 999, 1278, 1449
BshNI GGYRCC 4 cut(s) 188, 332, 620, 908
BslFI GGGAC 2 cut(s) 1579, 1628
BslI CCNNNNNNNGG 2 cut(s) 368, 1160
BsmAI GTCTC 4 cut(s) 254, 491, 779, 1388
BsmBI CGTCTC 2 cut(s) 491, 779
BsmFI GGGAC 2 cut(s) 1579, 1628
BsnI GGCC 3 cut(s) 999, 1278, 1449
Bsp119I TTCGAA 1 cut(s) 578
Bsp1286I GDGCHC 4 cut(s) 191, 335, 623, 911
BspANI GGCC 3 cut(s) 999, 1278, 1449
BspCNI CTCAG 8 cut(s) 69, 213, 501, 645, 789, 933, 1077, 1498
BspHI TCATGA 1 cut(s) 1531
BspLI GGNNCC 8 cut(s) 118, 190, 208, 334, 352, 622, 910, 1337
BspMI ACCTGC 1 cut(s) 1310
BspT104I TTCGAA 1 cut(s) 578
BspT107I GGYRCC 4 cut(s) 188, 332, 620, 908
BsrI ACTGG 5 cut(s) 84, 246, 660, 1351, 1495
Bst2UI CCWGG 1 cut(s) 1233
Bst4CI ACNGT 2 cut(s) 39, 903
BstBI TTCGAA 1 cut(s) 578
BstDEI CTNAG 9 cut(s) 56, 200, 488, 632, 776, 920, 1064, 1241, 1506
BstF5I GGATG 1 cut(s) 1624
BstMAI GTCTC 4 cut(s) 254, 491, 779, 1388
BstNI CCWGG 1 cut(s) 1233
BstSCI CCNGG 1 cut(s) 1231
BstSFI CTRYAG 2 cut(s) 144, 899
BstSLI GKGCMC 4 cut(s) 191, 335, 623, 911
BstX2I RGATCY 9 cut(s) 31, 373, 463, 607, 661, 895, 949, 1039, 1540
BstXI CCANNNNNNTGG 3 cut(s) 1139, 1274, 1346
BstYI RGATCY 9 cut(s) 31, 373, 463, 607, 661, 895, 949, 1039, 1540
BsuRI GGCC 3 cut(s) 999, 1278, 1449
BtsCI GGATG 1 cut(s) 1624
BtsIMutI CAGTG 9 cut(s) 64, 77, 208, 352, 496, 640, 784, 928, 1072
BveI ACCTGC 1 cut(s) 1310
CciI TCATGA 1 cut(s) 1531
Cfr13I GGNCC 3 cut(s) 998, 1277, 1447
CviAII CATG 2 cut(s) 1331, 1532
DdeI CTNAG 9 cut(s) 56, 200, 488, 632, 776, 920, 1064, 1241, 1506
DraIII CACNNNGTG 1 cut(s) 83
Eco57I CTGAAG 2 cut(s) 31, 1380
EcoRII CCWGG 1 cut(s) 1231
Esp3I CGTCTC 2 cut(s) 491, 779
FaeI CATG 2 cut(s) 1334, 1535
FaqI GGGAC 2 cut(s) 1579, 1628
FatI CATG 2 cut(s) 1330, 1531
FokI GGATG 1 cut(s) 1631
FspBI CTAG 9 cut(s) 179, 323, 368, 420, 467, 611, 708, 944, 1160
HaeIII GGCC 3 cut(s) 999, 1278, 1449
Hin1II CATG 2 cut(s) 1334, 1535
HincII GTYRAC 1 cut(s) 53
HindII GTYRAC 1 cut(s) 53
HindIII AAGCTT 2 cut(s) 1291, 1309
HphI GGTGA 4 cut(s) 95, 1422, 1433, 1615
Hpy166II GTNNAC 2 cut(s) 53, 1480
Hpy188III TCNNGA 8 cut(s) 179, 323, 467, 611, 755, 1171, 1532, 1564
Hpy8I GTNNAC 2 cut(s) 53, 1480
HpyAV CCTTC 2 cut(s) 585, 1355
HpyCH4III ACNGT 2 cut(s) 39, 903
HpyCH4V TGCA 3 cut(s) 1099, 1305, 1324
HpyF3I CTNAG 9 cut(s) 56, 200, 488, 632, 776, 920, 1064, 1241, 1506
Hsp92II CATG 2 cut(s) 1334, 1535
LweI GCATC 1 cut(s) 1333
MaeI CTAG 9 cut(s) 179, 323, 368, 420, 467, 611, 708, 944, 1160
MaeIII GTNAC 2 cut(s) 1091, 1124
MboII GAAGA 2 cut(s) 592, 1319
MfeI CAATTG 1 cut(s) 1340
MflI RGATCY 9 cut(s) 31, 373, 463, 607, 661, 895, 949, 1039, 1540
MhlI GDGCHC 4 cut(s) 191, 335, 623, 911
MmeI TCCRAC 5 cut(s) 239, 527, 671, 959, 1596
MnlI CCTC 2 cut(s) 1130, 1161
MroXI GAANNNNTTC 1 cut(s) 1249
MseI TTAA 4 cut(s) 1209, 1295, 1457, 1592
MslI CAYNNNNRTG 1 cut(s) 1329
MspA1I CMGCKG 1 cut(s) 1505
MspR9I CCNGG 1 cut(s) 1233
MunI CAATTG 1 cut(s) 1340
MvaI CCWGG 1 cut(s) 1233
NlaIII CATG 2 cut(s) 1334, 1535
NlaIV GGNNCC 8 cut(s) 118, 190, 208, 334, 352, 622, 910, 1337
NmuCI GTSAC 2 cut(s) 1091, 1124
NspV TTCGAA 1 cut(s) 578
PagI TCATGA 1 cut(s) 1531
PdmI GAANNNNTTC 1 cut(s) 1249
Psp6I CCWGG 1 cut(s) 1231
PspGI CCWGG 1 cut(s) 1231
PspN4I GGNNCC 8 cut(s) 118, 190, 208, 334, 352, 622, 910, 1337
PspPI GGNCC 3 cut(s) 998, 1277, 1447
PsuI RGATCY 9 cut(s) 31, 373, 463, 607, 661, 895, 949, 1039, 1540
PvuII CAGCTG 1 cut(s) 1505
RseI CAYNNNNRTG 1 cut(s) 1329
SaqAI TTAA 4 cut(s) 1209, 1295, 1457, 1592
Sau96I GGNCC 3 cut(s) 998, 1277, 1447
ScrFI CCNGG 1 cut(s) 1233
SduI GDGCHC 4 cut(s) 191, 335, 623, 911
SfaNI GCATC 1 cut(s) 1333
SfcI CTRYAG 2 cut(s) 144, 899
SfuI TTCGAA 1 cut(s) 578
SmiMI CAYNNNNRTG 1 cut(s) 1329
SspMI CTAG 9 cut(s) 179, 323, 368, 420, 467, 611, 708, 944, 1160
StyD4I CCNGG 1 cut(s) 1231
TaaI ACNGT 2 cut(s) 39, 903
TaqI TCGA 2 cut(s) 578, 1182
Tru1I TTAA 4 cut(s) 1209, 1295, 1457, 1592
Tru9I TTAA 4 cut(s) 1209, 1295, 1457, 1592
TscAI CASTG 9 cut(s) 64, 84, 208, 352, 496, 640, 784, 928, 1072
TseFI GTSAC 2 cut(s) 1091, 1124
Tsp45I GTSAC 2 cut(s) 1091, 1124
TspDTI ATGAA 4 cut(s) 1074, 1319, 1520, 1638
TspGWI ACGGA 1 cut(s) 1112
TspRI CASTG 9 cut(s) 64, 84, 208, 352, 496, 640, 784, 928, 1072
XapI RAATTY 4 cut(s) 1108, 1453, 1527, 1594
XbaI TCTAGA 4 cut(s) 178, 322, 466, 610
XmnI GAANNNNTTC 1 cut(s) 1249
XspI CTAG 9 cut(s) 179, 323, 368, 420, 467, 611, 708, 944, 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.