RchiOBHm_Chr4g0388701

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0007443
Physical Location & Seq
Reverse (-)
3934177 .. 3935319
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36191

Sequence Viewer

Length: 474 bp
ATGCAGGTCGTCGATAGGGCGGCGGCGGCGATCGCGGCGGCTCGCGCGCTTTTGAAAGAGAGCGGCTTGAAGAAGGAGTCCCGTTCCAGTGAGCCGGGTTCGGGTGGAGTGAGGACTGAACCGGATTTGGGTGGAGTGAGGACTGAGCCGGATTTGAGTGGAGCAATTGAGGCTCCTGATGAAGGAATGCAGGATGGGAGTATATCTGTGCCTCAGTCAGAAGAAAGTTCAGGAACTTGGACTCCAGGTCCAGACTTTTGGTCCTGGACCCCGCCGAGTAGTGATAGTTCAGATGATATAATTGACTTGCAGGCAGCGAAAAAGCCTTCAGCAAATCCAAACTTGAGTTTGCCAGTGAAGGAGAAAGAGCGATCCTTGGATGTTCTCTCAATTCCCCTTCAGAGTATTCTGTCTGAAATTCCTCTTCCCCCTTTGCAATCACTGAAGGAGGTCAAGAAAGTGGGATGTCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

16.57

Weight (kDa)

4.68

Isoelectric Point (pI)

60.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 63
AccII CGCG 3 cut(s) 35, 45, 47
AciI CCGC 7 cut(s) 20, 23, 26, 35, 38, 63, 272
AclWI GGATC 1 cut(s) 366
AcsI RAATTY 1 cut(s) 417
AcuI CTGAAG 3 cut(s) 312, 383, 464
AfiI CCNNNNNNNGG 3 cut(s) 101, 128, 182
AgsI TTSAA 2 cut(s) 55, 70
AhdI GACNNNNNGTC 2 cut(s) 246, 259
AjnI CCWGG 2 cut(s) 244, 263
AloI GAACNNNNNNTCC 2 cut(s) 226, 258
AlwI GGATC 1 cut(s) 366
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 1 cut(s) 417
AsiSI GCGATCGC 1 cut(s) 33
AspLEI GCGC 2 cut(s) 47, 49
AspS9I GGNCC 3 cut(s) 248, 261, 267
AsuC2I CCSGG 1 cut(s) 96
AvaII GGWCC 3 cut(s) 248, 261, 267
BbvI GCAGC 1 cut(s) 326
BccI CCATC 1 cut(s) 188
BciT130I CCWGG 2 cut(s) 246, 265
BcnI CCSGG 1 cut(s) 96
BisI GCNGC 7 cut(s) 21, 24, 27, 36, 39, 64, 315
BlsI GCNGC 7 cut(s) 22, 25, 28, 37, 40, 65, 316
Bme1390I CCNGG 3 cut(s) 96, 246, 265
Bme18I GGWCC 3 cut(s) 248, 261, 267
BmeRI GACNNNNNGTC 2 cut(s) 246, 259
BmgT120I GGNCC 3 cut(s) 248, 261, 267
BmiI GGNNCC 2 cut(s) 174, 269
BmrFI CCNGG 3 cut(s) 96, 246, 265
BpmI CTGGAG 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 364
BpuMI CCSGG 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 375
BsaWI WCCGGW 1 cut(s) 121
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 128, 182
Bse1I ACTGG 2 cut(s) 87, 353
BseBI CCWGG 2 cut(s) 246, 265
BseDI CCNNGG 1 cut(s) 375
BseGI GGATG 3 cut(s) 199, 385, 470
BseLI CCNNNNNNNGG 3 cut(s) 101, 128, 182
BseMII CTCAG 2 cut(s) 135, 227
BseNI ACTGG 2 cut(s) 87, 353
BsePI GCGCGC 1 cut(s) 45
BseXI GCAGC 1 cut(s) 326
Bsh1236I CGCG 3 cut(s) 35, 45, 47
Bsh1285I CGRYCG 1 cut(s) 33
BsiEI CGRYCG 1 cut(s) 33
BsiSI CCGG 3 cut(s) 95, 122, 149
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 3 cut(s) 101, 128, 182
BsmFI GGGAC 1 cut(s) 64
BsmI GAATGC 1 cut(s) 192
Bsp143I GATC 2 cut(s) 30, 371
BspACI CCGC 7 cut(s) 20, 23, 26, 35, 38, 63, 272
BspCNI CTCAG 2 cut(s) 136, 226
BspFNI CGCG 3 cut(s) 35, 45, 47
BspLI GGNNCC 2 cut(s) 174, 269
BspPI GGATC 1 cut(s) 366
BsrBI CCGCTC 1 cut(s) 63
BsrI ACTGG 2 cut(s) 87, 353
BssECI CCNNGG 1 cut(s) 375
BssHII GCGCGC 1 cut(s) 45
BssMI GATC 2 cut(s) 30, 371
BssT1I CCWWGG 1 cut(s) 375
Bst2UI CCWGG 2 cut(s) 246, 265
Bst6I CTCTTC 1 cut(s) 429
BstC8I GCNNGC 3 cut(s) 43, 47, 312
BstDEI CTNAG 2 cut(s) 144, 213
BstENI CCTNNNNNAGG 1 cut(s) 180
BstF5I GGATG 3 cut(s) 199, 385, 470
BstFNI CGCG 3 cut(s) 35, 45, 47
BstHHI GCGC 2 cut(s) 47, 49
BstKTI GATC 2 cut(s) 33, 374
BstMBI GATC 2 cut(s) 30, 371
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 5 cut(s) 26, 32, 35, 44, 170
BstNI CCWGG 2 cut(s) 246, 265
BstSCI CCNGG 3 cut(s) 94, 244, 263
BstUI CGCG 3 cut(s) 35, 45, 47
BstV1I GCAGC 1 cut(s) 326
BstXI CCANNNNNNTGG 1 cut(s) 258
BtsCI GGATG 3 cut(s) 199, 385, 470
BtsIMutI CAGTG 3 cut(s) 94, 360, 440
Cac8I GCNNGC 3 cut(s) 43, 47, 312
CfoI GCGC 2 cut(s) 47, 49
Cfr13I GGNCC 3 cut(s) 248, 261, 267
CviJI RGCY 6 cut(s) 41, 66, 94, 148, 173, 325
CviKI_1 RGCY 6 cut(s) 41, 66, 94, 148, 173, 325
DdeI CTNAG 2 cut(s) 144, 213
DpnI GATC 2 cut(s) 32, 373
DpnII GATC 2 cut(s) 30, 371
DriI GACNNNNNGTC 2 cut(s) 246, 259
Eam1104I CTCTTC 1 cut(s) 429
Eam1105I GACNNNNNGTC 2 cut(s) 246, 259
EarI CTCTTC 1 cut(s) 429
Eco130I CCWWGG 1 cut(s) 375
Eco47I GGWCC 3 cut(s) 248, 261, 267
Eco57I CTGAAG 3 cut(s) 312, 383, 464
EcoNI CCTNNNNNAGG 1 cut(s) 180
EcoRII CCWGG 2 cut(s) 244, 263
EcoT14I CCWWGG 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 375
FaiI YATR 2 cut(s) 203, 299
FaqI GGGAC 1 cut(s) 64
FauI CCCGC 1 cut(s) 279
Fnu4HI GCNGC 7 cut(s) 21, 24, 27, 36, 39, 64, 315
FokI GGATG 2 cut(s) 206, 392
Fsp4HI GCNGC 7 cut(s) 21, 24, 27, 36, 39, 64, 315
GlaI GCGC 2 cut(s) 46, 48
GluI GCNGC 7 cut(s) 21, 24, 27, 36, 39, 64, 315
GsuI CTGGAG 1 cut(s) 228
HapII CCGG 3 cut(s) 95, 122, 149
HhaI GCGC 2 cut(s) 47, 49
Hin6I GCGC 2 cut(s) 45, 47
HinP1I GCGC 2 cut(s) 45, 47
HinfI GANTC 2 cut(s) 77, 241
HpaII CCGG 3 cut(s) 95, 122, 149
Hpy188I TCNGA 4 cut(s) 220, 292, 402, 415
Hpy188III TCNNGA 4 cut(s) 176, 231, 251, 454
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 6 cut(s) 67, 176, 336, 352, 407, 439
HpyCH4V TGCA 4 cut(s) 4, 190, 310, 436
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 32, 35, 44, 170
HpyF3I CTNAG 2 cut(s) 144, 213
HspAI GCGC 2 cut(s) 45, 47
Kzo9I GATC 2 cut(s) 30, 371
LmnI GCTCC 2 cut(s) 161, 178
Lsp1109I GCAGC 1 cut(s) 326
MalI GATC 2 cut(s) 32, 373
MbiI CCGCTC 1 cut(s) 63
MboI GATC 2 cut(s) 30, 371
MboII GAAGA 3 cut(s) 82, 233, 416
MfeI CAATTG 1 cut(s) 165
MluCI AATT 4 cut(s) 165, 300, 390, 417
MlyI GAGTC 2 cut(s) 86, 235
MnlI CCTC 6 cut(s) 105, 132, 163, 222, 432, 442
MspI CCGG 3 cut(s) 95, 122, 149
MspR9I CCNGG 3 cut(s) 96, 246, 265
MunI CAATTG 1 cut(s) 165
Mva1269I GAATGC 1 cut(s) 192
MvaI CCWGG 2 cut(s) 246, 265
MvnI CGCG 3 cut(s) 35, 45, 47
MwoI GCNNNNNNNGC 5 cut(s) 26, 32, 35, 44, 170
NciI CCSGG 1 cut(s) 96
NdeII GATC 2 cut(s) 30, 371
NlaIV GGNNCC 2 cut(s) 174, 269
NmeAIII GCCGAG 1 cut(s) 300
PauI GCGCGC 1 cut(s) 45
PctI GAATGC 1 cut(s) 192
PfoI TCCNGGA 1 cut(s) 263
PkrI GCNGC 7 cut(s) 22, 25, 28, 37, 40, 65, 316
Ple19I CGATCG 1 cut(s) 33
PleI GAGTC 2 cut(s) 85, 235
PpsI GAGTC 2 cut(s) 85, 235
Psp6I CCWGG 2 cut(s) 244, 263
PspGI CCWGG 2 cut(s) 244, 263
PspN4I GGNNCC 2 cut(s) 174, 269
PspPI GGNCC 3 cut(s) 248, 261, 267
PsrI GAACNNNNNNTAC 2 cut(s) 271, 303
PteI GCGCGC 1 cut(s) 45
PvuI CGATCG 1 cut(s) 33
RgaI GCGATCGC 1 cut(s) 33
SatI GCNGC 7 cut(s) 21, 24, 27, 36, 39, 64, 315
Sau3AI GATC 2 cut(s) 30, 371
Sau96I GGNCC 3 cut(s) 248, 261, 267
SchI GAGTC 2 cut(s) 86, 235
ScrFI CCNGG 3 cut(s) 96, 246, 265
SetI ASST 3 cut(s) 9, 250, 453
SfaAI GCGATCGC 1 cut(s) 33
SgfI GCGATCGC 1 cut(s) 33
SinI GGWCC 3 cut(s) 248, 261, 267
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 4 cut(s) 165, 300, 390, 417
SsiI CCGC 7 cut(s) 20, 23, 26, 35, 38, 63, 272
StyD4I CCNGG 3 cut(s) 94, 244, 263
StyI CCWWGG 1 cut(s) 375
TaqI TCGA 1 cut(s) 12
TasI AATT 4 cut(s) 165, 300, 390, 417
TauI GCSGC 6 cut(s) 23, 26, 29, 38, 41, 66
TscAI CASTG 3 cut(s) 94, 360, 447
TseI GCWGC 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 195
TspRI CASTG 3 cut(s) 94, 360, 447
VpaK11BI GGWCC 3 cut(s) 248, 261, 267
XagI CCTNNNNNAGG 1 cut(s) 180
XapI RAATTY 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.