Rmu_sc0010392.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010392.1
OG0007443
Physical Location & Seq
Reverse (-)
318 .. 690
373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010392.1_g000002.1.cds

Sequence Viewer

Length: 373 bp
cccgccgagtagtgatagttcagatgatataattgacttgcaggcagcgaaaaagccttcagcaaatccaaacttgagttttccagtgaaggagaaagagcgatccttggatgttctctcaattccccttcagagtaatctgtctgaaattcctcttccccctttgcaatcactgaaggaggtcgagaaagtggatgtcgctgagtccacttccacaaagaggaacatgaacttggacatgagttttcagtacatgcagcagaagctgctcgtgctcttgataaggcggatcaggagtcattatctggtgtgtatacggatggagctaggtggtggaaggaatctggagttgagcaaaggccggatggcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.81

Weight (kDa)

8.89

Isoelectric Point (pI)

70.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 314
AciI CCGC 2 cut(s) 3, 287
AclWI GGATC 2 cut(s) 97, 297
AcsI RAATTY 1 cut(s) 148
AcuI CTGAAG 3 cut(s) 43, 114, 195
AfaI GTAC 1 cut(s) 252
AfiI CCNNNNNNNGG 1 cut(s) 220
AjuI GAANNNNNNNTTGG 2 cut(s) 216, 248
AluBI AGCT 2 cut(s) 266, 326
AluI AGCT 2 cut(s) 266, 326
Alw21I GWGCWC 1 cut(s) 277
AlwI GGATC 2 cut(s) 97, 297
AlwNI CAGNNNCTG 1 cut(s) 266
AoxI GGCC 1 cut(s) 359
ApeKI GCWGC 3 cut(s) 45, 257, 266
ApoI RAATTY 1 cut(s) 148
BauI CACGAG 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 277
BbvI GCAGC 3 cut(s) 57, 253, 269
BccI CCATC 2 cut(s) 314, 359
BfaI CTAG 1 cut(s) 327
BisI GCNGC 3 cut(s) 46, 258, 267
BlsI GCNGC 3 cut(s) 47, 259, 268
BpmI CTGGAG 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 106
BseGI GGATG 4 cut(s) 116, 200, 325, 370
BseLI CCNNNNNNNGG 1 cut(s) 220
BseMII CTCAG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 84
BseXI GCAGC 3 cut(s) 57, 253, 269
BshFI GGCC 1 cut(s) 361
BsiHKAI GWGCWC 1 cut(s) 277
BsiSI CCGG 1 cut(s) 362
BslI CCNNNNNNNGG 1 cut(s) 220
BsnI GGCC 1 cut(s) 361
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 2 cut(s) 102, 289
BspACI CCGC 2 cut(s) 3, 287
BspANI GGCC 1 cut(s) 361
BspCNI CTCAG 1 cut(s) 194
BspPI GGATC 2 cut(s) 97, 297
BsrI ACTGG 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 2 cut(s) 102, 289
BssNAI GTATAC 1 cut(s) 315
BssSI CACGAG 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 106
Bst1107I GTATAC 1 cut(s) 315
Bst2BI CACGAG 1 cut(s) 270
Bst6I CTCTTC 1 cut(s) 160
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 1 cut(s) 202
BstF5I GGATG 4 cut(s) 116, 200, 325, 370
BstKTI GATC 2 cut(s) 105, 292
BstMBI GATC 2 cut(s) 102, 289
BstMWI GCNNNNNNNGC 3 cut(s) 263, 266, 272
BstNSI RCATGY 1 cut(s) 257
BstV1I GCAGC 3 cut(s) 57, 253, 269
BstZ17I GTATAC 1 cut(s) 315
BsuRI GGCC 1 cut(s) 361
BtsCI GGATG 4 cut(s) 116, 200, 325, 370
BtsIMutI CAGTG 2 cut(s) 91, 171
Cac8I GCNNGC 1 cut(s) 43
CaiI CAGNNNCTG 1 cut(s) 266
Csp6I GTAC 1 cut(s) 251
CviAII CATG 3 cut(s) 227, 239, 254
CviJI RGCY 4 cut(s) 56, 266, 326, 361
CviKI_1 RGCY 4 cut(s) 56, 266, 326, 361
CviQI GTAC 1 cut(s) 251
DdeI CTNAG 1 cut(s) 202
DpnI GATC 2 cut(s) 104, 291
DpnII GATC 2 cut(s) 102, 289
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
EciI GGCGGA 1 cut(s) 302
Eco130I CCWWGG 1 cut(s) 106
Eco57I CTGAAG 3 cut(s) 43, 114, 195
EcoT14I CCWWGG 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 106
FaeI CATG 3 cut(s) 230, 242, 257
FaiI YATR 5 cut(s) 30, 228, 240, 255, 315
FatI CATG 3 cut(s) 226, 238, 253
FauI CCCGC 1 cut(s) 10
FblI GTMKAC 1 cut(s) 314
Fnu4HI GCNGC 3 cut(s) 46, 258, 267
FokI GGATG 3 cut(s) 123, 207, 332
Fsp4HI GCNGC 3 cut(s) 46, 258, 267
FspBI CTAG 1 cut(s) 327
GluI GCNGC 3 cut(s) 46, 258, 267
GsuI CTGGAG 1 cut(s) 366
HaeIII GGCC 1 cut(s) 361
HapII CCGG 1 cut(s) 362
Hin1II CATG 3 cut(s) 230, 242, 257
HinfI GANTC 3 cut(s) 204, 296, 341
HpaII CCGG 1 cut(s) 362
Hpy166II GTNNAC 2 cut(s) 208, 315
Hpy188I TCNGA 3 cut(s) 23, 133, 146
Hpy188III TCNNGA 4 cut(s) 185, 278, 293, 345
Hpy8I GTNNAC 2 cut(s) 208, 315
HpyAV CCTTC 5 cut(s) 67, 83, 138, 170, 331
HpyCH4V TGCA 3 cut(s) 41, 167, 257
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 266, 272
HpyF3I CTNAG 1 cut(s) 202
Hsp92II CATG 3 cut(s) 230, 242, 257
Kzo9I GATC 2 cut(s) 102, 289
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 5 cut(s) 27, 97, 278, 291, 330
Lsp1109I GCAGC 3 cut(s) 57, 253, 269
MaeI CTAG 1 cut(s) 327
MalI GATC 2 cut(s) 104, 291
MboI GATC 2 cut(s) 102, 289
MboII GAAGA 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 3 cut(s) 31, 121, 148
MlyI GAGTC 2 cut(s) 213, 305
MnlI CCTC 3 cut(s) 163, 173, 214
MspI CCGG 1 cut(s) 362
MwoI GCNNNNNNNGC 3 cut(s) 263, 266, 272
NdeII GATC 2 cut(s) 102, 289
NlaIII CATG 3 cut(s) 230, 242, 257
NmeAIII GCCGAG 1 cut(s) 31
NspI RCATGY 1 cut(s) 257
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 3 cut(s) 47, 259, 268
PleI GAGTC 2 cut(s) 212, 304
PpsI GAGTC 2 cut(s) 212, 304
PsrI GAACNNNNNNTAC 1 cut(s) 34
PstNI CAGNNNCTG 1 cut(s) 266
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
SatI GCNGC 3 cut(s) 46, 258, 267
Sau3AI GATC 2 cut(s) 102, 289
SchI GAGTC 2 cut(s) 213, 305
SduI GDGCHC 1 cut(s) 277
SetI ASST 4 cut(s) 184, 268, 328, 332
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 3 cut(s) 31, 121, 148
SsiI CCGC 2 cut(s) 3, 287
SspMI CTAG 1 cut(s) 327
StyI CCWWGG 1 cut(s) 106
TaqI TCGA 1 cut(s) 184
TasI AATT 3 cut(s) 31, 121, 148
TatI WGTACW 1 cut(s) 250
TfiI GAWTC 1 cut(s) 341
TscAI CASTG 2 cut(s) 91, 178
TseI GCWGC 3 cut(s) 45, 257, 266
TspDTI ATGAA 1 cut(s) 243
TspGWI ACGGA 1 cut(s) 332
TspRI CASTG 2 cut(s) 91, 178
XapI RAATTY 1 cut(s) 148
XceI RCATGY 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 314
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.