Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007443

Physical Location & Seq

Genomic Coordinates Reverse (-)

5179704 .. 5187612

Gene Structure 7909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG026900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1956 bp

ATGGAAAATAAAGACGATGAATCTTGTTATCAGCATTGTAGTAACACTGAGAATGAGCAAAGAGGATGTGAAGATGATGCAATTGATGGTGAGACTAATGAGGAACCTGAATATGATACTCAAGAGGCTAGTAGAGATACTCAAGTGCCCAGTGATGATGAACACGTGGATTCTGGTTTAGAAGGTTTATGTATCTTGGATGGTAAGAAGCAAGTAAGAGCTCCGGCGGACAACGAAGTCGCCGGCGCCGGCGAGAGCATTGAGGAGAATCTGGAGCATAAGAGCCAGGAGTTCGAGAGGATTCTGGAGGTTCCGAAGGAGGAGAGGGATCGGATTCAGCGAATGCAGGTCGTCGATAGGGCGGCGGCGGCGATCGCGGCGGCTCGCGCGCTTTTGAAAGAGAGCGGCTTGAAGAAGGAGTCCCGTTCCAGTGAGCCGGGTTCGGGTGGAGTGAGGACTGAACCGGATTTGGATGGAGTGAGGACTGAGCCGGATTTGAGTGGAGCAATTGAGGCTCCTGATGAAGGAATGCAGGATGGGAGTATATCTGTGCCTCAGTCAGAAGAAAGTTCAGGAACTTGGACTCCAGGTCCAGACTTTTGGTCCTGGACCCCGCCGAGTAGTGATAGTTCAGATGATATAATTGACTTGCAGGCAGCGAAAAAGCCTTCAGCAAATCCAAACTTGAGTTTGCCAGTGAAGGAGAAAGAGCGATCCTTGGATGTTCTCTCAATTCCCCTTCAGAGTATTCTGTCTGAAATTCCTCTTCCCCCTTTGCAATCACTGAAGGAGGTCAAGAAAGTGGATGTCGCTGAGTCCACTTCCACAAAAGAGGAACATGAACTTGGACATGAGTTTTCAGTACATGCAGCAGAAGCTGCTCGTGCTCTTGATAAGGCGGATCAGGAGTCATTATCTGGTGTGTATACGGATGGAGCTAGGTGGTGGAAGGAATCTGGAGTTGAGCAAAGGCCGGATGGCGTGACGTGCAGGTGGACAATGATCAGAGGTGTCAGTGCCGACCAAGTTACTGAGTGGCAAGATAAGTACTGGGAGGCTGCAGATGAGTTAGGCCACAAGGAGCTTGGTTCAGAAAAATCGGGACGTGACGCATACGGAAATGTTTGGCGTGAACATTGGAAAGAAGCTATGTGGCAGAATTGTGGGCTTGTGCATATGGAGAAATCTGCAGACAAGTGGGGAAAGAATGGTAGAGGTGATGAATGGCAAGAGAAATGGTGGGAGCATTATGATGCTTCAGGCCAAGCAGAGAAATGGGCTCATAAGTGGTGTACAATTGATCCAAACACACCAGTTGATGTTGGTCATGCTCACATTTGGCATGAAAGGTGGGGTGAAACGTATGATGGACATGGTGGGAGTAATAAATACACTGACAAATGGGCTGAACGCTGCGAGGGAGATGGTTGGTCAAAATGGGGTGACAAATGGGATGAACATTTTGATCCAAATGGCCATGGTATGAAGCAGGGTGAAACATGGTGGGAAGGCAAGTATGGAGAACGGTGGAACAAAACATGGGGCGAGGGCCACAATGGTTCAGGGTGGATTCACAAGTATGGGAAGAGCAGCAGCGGTGATCACTGGGATACACATGAGCAGGAAGACACCTGGTATGAGAGATTCCCTCACTTCGGTTTCTATCACTGCTTTGAAAACTCAGTTCAGCTCAGGGAAGTTCGAAAGCCATCAGAGATTGCATCGCAGATGTCTTCAGAGACTTCATCCGAGATGCCTTCTGAGACTTCGTCGGAGATGCCTTCATCAGAGATGCTTTCAGAGACTTCATCAGAGATGCCTCCAGAGACTTCATCTGAGATACCTTCAGAGACTTCATCGGAGATACCTTCAGAAATTCCATCGGACATGTCATCAGACGGTCCATTGGAGTTGCCCTCAGAGCTTCTATTGAAGAGACAATCAGAGGTGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

651

Amino Acids

73.24

Weight (kDa)

4.6

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55760 AT3G55760 AT3G55760
fragaria_vesca	FvH4_4g01790 FvH4_4g01790
malus_domestica	MD13G1202100.v1.1 MD16G1202300.v1.1
prunus_persica	Prupe.1G023800_v2.0.a1
pyrus_communis	pycom16g17070
rosa_chinensis	RchiOBHm_Chr4g0388701 RchiOBHm_Chr4g0388821
rosa_laevigata	RLG00000010026
rosa_multiflora	Rmu_sc0000697.1_g000013 Rmu_sc0010392.1_g000002 Rmu_sc0016023.1_g000002
rosa_roxburghii	Rroxscaffold_5G00335100
rosa_rugosa	Rorug03G0320100
rosa_samantha	Rh4AG024100 Rh4AG024900 Rh4BG017900 Rh4CG026900 Rh4CG027600 Rh4DG018200
rosa_wichuraiana	Rw4G001740 Rw4G001780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	981
AasI	GACNNNNNNGTC	1 cut(s)	236
Acc36I	ACCTGC	2 cut(s)	337, 981
AccB1I	GGYRCC	1 cut(s)	245
AccBSI	CCGCTC	1 cut(s)	405
AccI	GTMKAC	1 cut(s)	926
AccII	CGCG	3 cut(s)	377, 387, 389
AclWI	GGATC	5 cut(s)	336, 708, 909, 1295, 1460
AcoI	YGGCCR	1 cut(s)	1474
AcsI	RAATTY	2 cut(s)	759, 1875
AcuI	CTGAAG	7 cut(s)	654, 725, 806, 1242, 1719, 1830, 1854
AcvI	CACGTG	1 cut(s)	166
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	3 cut(s)	864, 1049, 1294
AfiI	CCNNNNNNNGG	3 cut(s)	443, 524, 1655
AflIII	ACRYGT	2 cut(s)	163, 1887
AgsI	TTSAA	4 cut(s)	397, 412, 1676, 1933
AhdI	GACNNNNNGTC	2 cut(s)	588, 601
AjiI	CACGTC	2 cut(s)	987, 1106
AjnI	CCWGG	4 cut(s)	285, 586, 605, 1631
AjuI	GAANNNNNNNTTGG	2 cut(s)	828, 860
AloI	GAACNNNNNNTCC	2 cut(s)	568, 600
AluBI	AGCT	7 cut(s)	221, 878, 938, 1084, 1148, 1690, 1924
AluI	AGCT	7 cut(s)	221, 878, 938, 1084, 1148, 1690, 1924
Alw21I	GWGCWC	2 cut(s)	223, 889
Alw26I	GTCTC	7 cut(s)	86, 1733, 1757, 1796, 1820, 1844, 1930
AlwI	GGATC	5 cut(s)	336, 708, 909, 1295, 1460
AlwNI	CAGNNNCTG	1 cut(s)	878
AoxI	GGCC	6 cut(s)	971, 1072, 1261, 1474, 1549, 1950
ApeKI	GCWGC	7 cut(s)	656, 869, 878, 1058, 1413, 1590, 1593
ApoI	RAATTY	2 cut(s)	759, 1875
AsiSI	GCGATCGC	1 cut(s)	375
AspLEI	GCGC	3 cut(s)	248, 389, 391
AspS9I	GGNCC	5 cut(s)	590, 603, 609, 1549, 1901
AsuC2I	CCSGG	1 cut(s)	438
AsuHPI	GGTGA	6 cut(s)	101, 1229, 1367, 1454, 1505, 1610
AsuII	TTCGAA	1 cut(s)	1702
AvaII	GGWCC	4 cut(s)	590, 603, 609, 1901
BaeGI	GKGCMC	1 cut(s)	150
BaeI	ACNNNNGTAYC	2 cut(s)	129, 162
BalI	TGGCCA	1 cut(s)	1476
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	2 cut(s)	223, 1282
BauI	CACGAG	1 cut(s)	882
BbrPI	CACGTG	1 cut(s)	166
BbsI	GAAGAC	2 cut(s)	1632, 1725
Bbv12I	GWGCWC	2 cut(s)	223, 889
BbvI	GCAGC	7 cut(s)	668, 865, 881, 1045, 1400, 1602, 1605
BciT130I	CCWGG	4 cut(s)	287, 588, 607, 1633
BciVI	GTATCC	1 cut(s)	1603
BclI	TGATCA	2 cut(s)	1002, 1600
BcnI	CCSGG	1 cut(s)	438
BcoDI	GTCTC	7 cut(s)	86, 1733, 1757, 1796, 1820, 1844, 1930
BfaI	CTAG	2 cut(s)	129, 939
BfmI	CTRYAG	2 cut(s)	1059, 1188
BfoI	RGCGCY	1 cut(s)	249
BfuAI	ACCTGC	2 cut(s)	337, 981
BfuI	GTATCC	1 cut(s)	1603
BmcAI	AGTACT	1 cut(s)	1049
Bme1390I	CCNGG	5 cut(s)	287, 438, 588, 607, 1633
Bme18I	GGWCC	4 cut(s)	590, 603, 609, 1901
BmeRI	GACNNNNNGTC	2 cut(s)	588, 601
BmgBI	CACGTC	2 cut(s)	987, 1106
BmgT120I	GGNCC	5 cut(s)	590, 603, 609, 1549, 1901
BmiI	GGNNCC	5 cut(s)	105, 247, 312, 516, 611
BmrFI	CCNGG	5 cut(s)	287, 438, 588, 607, 1633
BmrI	ACTGGG	3 cut(s)	144, 1060, 1615
BmsI	GCATC	7 cut(s)	67, 1243, 1730, 1743, 1767, 1782, 1806
BmuI	ACTGGG	3 cut(s)	144, 1060, 1615
BpiI	GAAGAC	2 cut(s)	1632, 1725
BplI	GAGNNNNNCTC	4 cut(s)	1633, 1665, 1901, 1933
BpmI	CTGGAG	5 cut(s)	293, 326, 570, 978, 1806
Bpu10I	CCTNAGC	1 cut(s)	1691
Bpu14I	TTCGAA	1 cut(s)	1702
BpuEI	CTTGAG	3 cut(s)	105, 126, 706
BpuMI	CCSGG	1 cut(s)	438
BsaAI	YACGTR	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	717, 1477
BsaWI	WCCGGW	1 cut(s)	463
BsaXI	ACNNNNNCTCC	2 cut(s)	568, 598
Bsc4I	CCNNNNNNNGG	3 cut(s)	443, 524, 1655
Bse118I	RCCGGY	2 cut(s)	242, 248
Bse1I	ACTGG	6 cut(s)	150, 429, 695, 1055, 1313, 1610
BseBI	CCWGG	4 cut(s)	287, 588, 607, 1633
BseDI	CCNNGG	2 cut(s)	717, 1477
BseLI	CCNNNNNNNGG	3 cut(s)	443, 524, 1655
BseNI	ACTGG	6 cut(s)	150, 429, 695, 1055, 1313, 1610
BsePI	GCGCGC	1 cut(s)	387
BseRI	GAGGAG	2 cut(s)	278, 335
BseSI	GKGCMC	1 cut(s)	150
BseXI	GCAGC	7 cut(s)	668, 865, 881, 1045, 1400, 1602, 1605
BsgI	GTGCAG	1 cut(s)	1009
Bsh1236I	CGCG	3 cut(s)	377, 387, 389
Bsh1285I	CGRYCG	1 cut(s)	375
BshFI	GGCC	6 cut(s)	973, 1074, 1263, 1476, 1551, 1952
BshNI	GGYRCC	1 cut(s)	245
BsiEI	CGRYCG	1 cut(s)	375
BsiHKAI	GWGCWC	2 cut(s)	223, 889
BsiSI	CCGG	7 cut(s)	224, 243, 249, 437, 464, 491, 974
BslFI	GGGAC	2 cut(s)	406, 1116
BslI	CCNNNNNNNGG	3 cut(s)	443, 524, 1655
BsmAI	GTCTC	7 cut(s)	86, 1733, 1757, 1796, 1820, 1844, 1930
BsmFI	GGGAC	2 cut(s)	406, 1116
BsmI	GAATGC	2 cut(s)	348, 534
BsnI	GGCC	6 cut(s)	973, 1074, 1263, 1476, 1551, 1952
Bsp119I	TTCGAA	1 cut(s)	1702
Bsp1286I	GDGCHC	4 cut(s)	150, 223, 889, 1282
Bsp1407I	TGTACA	1 cut(s)	1292
Bsp143I	GATC	8 cut(s)	328, 372, 713, 901, 1002, 1300, 1465, 1600
Bsp19I	CCATGG	1 cut(s)	1477
BspANI	GGCC	6 cut(s)	973, 1074, 1263, 1476, 1551, 1952
BspFNI	CGCG	3 cut(s)	377, 387, 389
BspLI	GGNNCC	5 cut(s)	105, 247, 312, 516, 611
BspMAI	CTGCAG	2 cut(s)	1063, 1192
BspMI	ACCTGC	2 cut(s)	337, 981
BspPI	GGATC	5 cut(s)	336, 708, 909, 1295, 1460
BspQI	GCTCTTC	1 cut(s)	1580
BspT104I	TTCGAA	1 cut(s)	1702
BspT107I	GGYRCC	1 cut(s)	245
BsrBI	CCGCTC	1 cut(s)	405
BsrFI	RCCGGY	2 cut(s)	242, 248
BsrGI	TGTACA	1 cut(s)	1292
BsrI	ACTGG	6 cut(s)	150, 429, 695, 1055, 1313, 1610
BssAI	RCCGGY	2 cut(s)	242, 248
BssECI	CCNNGG	2 cut(s)	717, 1477
BssHII	GCGCGC	1 cut(s)	387
BssMI	GATC	8 cut(s)	328, 372, 713, 901, 1002, 1300, 1465, 1600
BssNAI	GTATAC	1 cut(s)	927
BssNI	GRCGYC	1 cut(s)	246
BssSI	CACGAG	1 cut(s)	882
BssT1I	CCWWGG	2 cut(s)	717, 1477
Bst1107I	GTATAC	1 cut(s)	927
Bst2BI	CACGAG	1 cut(s)	882
Bst2UI	CCWGG	4 cut(s)	287, 588, 607, 1633
Bst4CI	ACNGT	2 cut(s)	1527, 1901
Bst6I	CTCTTC	3 cut(s)	771, 1580, 1928
BstACI	GRCGYC	1 cut(s)	246
BstAPI	GCANNNNNTGC	1 cut(s)	878
BstAUI	TGTACA	1 cut(s)	1292
BstBAI	YACGTR	1 cut(s)	166
BstBI	TTCGAA	1 cut(s)	1702
BstC8I	GCNNGC	5 cut(s)	244, 250, 385, 389, 654
BstDSI	CCRYGG	1 cut(s)	1477
BstENI	CCTNNNNNAGG	1 cut(s)	522
BstFNI	CGCG	3 cut(s)	377, 387, 389
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	3 cut(s)	248, 389, 391
BstKTI	GATC	8 cut(s)	331, 375, 716, 904, 1005, 1303, 1468, 1603
BstMAI	GTCTC	7 cut(s)	86, 1733, 1757, 1796, 1820, 1844, 1930
BstMBI	GATC	8 cut(s)	328, 372, 713, 901, 1002, 1300, 1465, 1600
BstMCI	CGRYCG	1 cut(s)	375
BstNI	CCWGG	4 cut(s)	287, 588, 607, 1633
BstNSI	RCATGY	2 cut(s)	869, 1891
BstSCI	CCNGG	5 cut(s)	285, 436, 586, 605, 1631
BstSFI	CTRYAG	2 cut(s)	1059, 1188
BstSLI	GKGCMC	1 cut(s)	150
BstUI	CGCG	3 cut(s)	377, 387, 389
BstV1I	GCAGC	7 cut(s)	668, 865, 881, 1045, 1400, 1602, 1605
BstV2I	GAAGAC	2 cut(s)	1632, 1725
BstXI	CCANNNNNNTGG	1 cut(s)	600
BstZ17I	GTATAC	1 cut(s)	927
BsuI	GTATCC	1 cut(s)	1603
BsuRI	GGCC	6 cut(s)	973, 1074, 1263, 1476, 1551, 1952
BtgI	CCRYGG	1 cut(s)	1477
BtgZI	GCGATG	1 cut(s)	1707
BtrI	CACGTC	2 cut(s)	987, 1106
BtsI	GCAGTG	1 cut(s)	1666
BtsIMutI	CAGTG	9 cut(s)	45, 157, 436, 702, 782, 1021, 1392, 1603, 1666
BveI	ACCTGC	2 cut(s)	337, 981
Cac8I	GCNNGC	5 cut(s)	244, 250, 385, 389, 654
CaiI	CAGNNNCTG	1 cut(s)	878
CfoI	GCGC	3 cut(s)	248, 389, 391
Cfr10I	RCCGGY	2 cut(s)	242, 248
Cfr13I	GGNCC	5 cut(s)	590, 603, 609, 1549, 1901
CseI	GACGC	1 cut(s)	1118
CsiI	ACCWGGT	1 cut(s)	1631
Csp6I	GTAC	3 cut(s)	863, 1048, 1293
CviQI	GTAC	3 cut(s)	863, 1048, 1293
DinI	GGCGCC	1 cut(s)	247
DpnI	GATC	8 cut(s)	330, 374, 715, 903, 1004, 1302, 1467, 1602
DpnII	GATC	8 cut(s)	328, 372, 713, 901, 1002, 1300, 1465, 1600
DrdI	GACNNNNNNGTC	1 cut(s)	236
DriI	GACNNNNNGTC	2 cut(s)	588, 601
DseDI	GACNNNNNNGTC	1 cut(s)	236
EaeI	YGGCCR	1 cut(s)	1474
Eam1104I	CTCTTC	3 cut(s)	771, 1580, 1928
Eam1105I	GACNNNNNGTC	2 cut(s)	588, 601
EarI	CTCTTC	3 cut(s)	771, 1580, 1928
EciI	GGCGGA	2 cut(s)	242, 914
Ecl136II	GAGCTC	1 cut(s)	221
Eco130I	CCWWGG	2 cut(s)	717, 1477
Eco24I	GRGCYC	2 cut(s)	223, 1282
Eco47I	GGWCC	4 cut(s)	590, 603, 609, 1901
Eco53kI	GAGCTC	1 cut(s)	221
Eco57I	CTGAAG	7 cut(s)	654, 725, 806, 1242, 1719, 1830, 1854
Eco72I	CACGTG	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	221
EcoNI	CCTNNNNNAGG	1 cut(s)	522
EcoRII	CCWGG	4 cut(s)	285, 586, 605, 1631
EcoT14I	CCWWGG	2 cut(s)	717, 1477
EcoT38I	GRGCYC	2 cut(s)	223, 1282
EgeI	GGCGCC	1 cut(s)	247
EheI	GGCGCC	1 cut(s)	247
ErhI	CCWWGG	2 cut(s)	717, 1477
FaqI	GGGAC	2 cut(s)	406, 1116
FauI	CCCGC	1 cut(s)	621
FauNDI	CATATG	1 cut(s)	1176
FbaI	TGATCA	2 cut(s)	1002, 1600
FblI	GTMKAC	1 cut(s)	926
FriOI	GRGCYC	2 cut(s)	223, 1282
FspBI	CTAG	2 cut(s)	129, 939
GlaI	GCGC	3 cut(s)	247, 388, 390
GsuI	CTGGAG	5 cut(s)	293, 326, 570, 978, 1806
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	6 cut(s)	973, 1074, 1263, 1476, 1551, 1952
HapII	CCGG	7 cut(s)	224, 243, 249, 437, 464, 491, 974
HgaI	GACGC	1 cut(s)	1118
HhaI	GCGC	3 cut(s)	248, 389, 391
Hin1I	GRCGYC	1 cut(s)	246
Hin6I	GCGC	3 cut(s)	246, 387, 389
HinP1I	GCGC	3 cut(s)	246, 387, 389
HpaII	CCGG	7 cut(s)	224, 243, 249, 437, 464, 491, 974
HphI	GGTGA	6 cut(s)	101, 1229, 1367, 1454, 1505, 1610
Hpy166II	GTNNAC	5 cut(s)	819, 927, 996, 1133, 1293
Hpy8I	GTNNAC	5 cut(s)	819, 927, 996, 1133, 1293
Hpy99I	CGWCG	2 cut(s)	356, 1774
HpyCH4III	ACNGT	2 cut(s)	1527, 1901
HpyCH4IV	ACGT	4 cut(s)	165, 986, 1105, 1361
HpySE526I	ACGT	4 cut(s)	165, 986, 1105, 1361
Hsp92I	GRCGYC	1 cut(s)	246
HspAI	GCGC	3 cut(s)	246, 387, 389
KasI	GGCGCC	1 cut(s)	245
KroI	GCCGGC	2 cut(s)	242, 248
KroNI	GCCGGC	2 cut(s)	244, 250
Ksp22I	TGATCA	2 cut(s)	1002, 1600
Kzo9I	GATC	8 cut(s)	328, 372, 713, 901, 1002, 1300, 1465, 1600
LguI	GCTCTTC	1 cut(s)	1580
LmnI	GCTCC	7 cut(s)	226, 274, 503, 520, 935, 1081, 1243
Lsp1109I	GCAGC	7 cut(s)	668, 865, 881, 1045, 1400, 1602, 1605
LweI	GCATC	7 cut(s)	67, 1243, 1730, 1743, 1767, 1782, 1806
MabI	ACCWGGT	1 cut(s)	1631
MaeI	CTAG	2 cut(s)	129, 939
MaeII	ACGT	4 cut(s)	165, 986, 1105, 1361
MaeIII	GTNAC	5 cut(s)	41, 982, 1027, 1106, 1442
MalI	GATC	8 cut(s)	330, 374, 715, 903, 1004, 1302, 1467, 1602
MbiI	CCGCTC	1 cut(s)	405
MboI	GATC	8 cut(s)	328, 372, 713, 901, 1002, 1300, 1465, 1600
MboII	GAAGA	8 cut(s)	83, 424, 575, 758, 1597, 1637, 1725, 1945
MfeI	CAATTG	3 cut(s)	81, 507, 1296
MhlI	GDGCHC	4 cut(s)	150, 223, 889, 1282
MlsI	TGGCCA	1 cut(s)	1476
MluCI	AATT	8 cut(s)	81, 507, 642, 732, 759, 1159, 1296, 1875
MluNI	TGGCCA	1 cut(s)	1476
Mly113I	GGCGCC	1 cut(s)	246
MlyI	GAGTC	4 cut(s)	428, 577, 824, 917
MmeI	TCCRAC	1 cut(s)	1752
Mox20I	TGGCCA	1 cut(s)	1476
MreI	CGCCGGCG	2 cut(s)	242, 248
MroNI	GCCGGC	2 cut(s)	242, 248
MscI	TGGCCA	1 cut(s)	1476
MslI	CAYNNNNRTG	2 cut(s)	1251, 1578
Msp20I	TGGCCA	1 cut(s)	1476
MspA1I	CMGCKG	1 cut(s)	1596
MspI	CCGG	7 cut(s)	224, 243, 249, 437, 464, 491, 974
MspR9I	CCNGG	5 cut(s)	287, 438, 588, 607, 1633
MunI	CAATTG	3 cut(s)	81, 507, 1296
Mva1269I	GAATGC	2 cut(s)	348, 534
MvaI	CCWGG	4 cut(s)	287, 588, 607, 1633
MvnI	CGCG	3 cut(s)	377, 387, 389
NaeI	GCCGGC	2 cut(s)	244, 250
NarI	GGCGCC	1 cut(s)	246
NciI	CCSGG	1 cut(s)	438
NcoI	CCATGG	1 cut(s)	1477
NdeI	CATATG	1 cut(s)	1176
NdeII	GATC	8 cut(s)	328, 372, 713, 901, 1002, 1300, 1465, 1600
NgoMIV	GCCGGC	2 cut(s)	242, 248
NlaIV	GGNNCC	5 cut(s)	105, 247, 312, 516, 611
NmeAIII	GCCGAG	1 cut(s)	642
NmuCI	GTSAC	3 cut(s)	982, 1106, 1442
NspI	RCATGY	2 cut(s)	869, 1891
NspV	TTCGAA	1 cut(s)	1702
PaqCI	CACCTGC	1 cut(s)	981
PauI	GCGCGC	1 cut(s)	387
PciI	ACATGT	1 cut(s)	1887
PciSI	GCTCTTC	1 cut(s)	1580
PcsI	WCGNNNNNNNCGW	1 cut(s)	337
PctI	GAATGC	2 cut(s)	348, 534
PdiI	GCCGGC	2 cut(s)	244, 250
PfeI	GAWTC	8 cut(s)	20, 170, 268, 301, 334, 953, 1570, 1644
PflFI	GACNNNGTC	1 cut(s)	1768
PfoI	TCCNGGA	1 cut(s)	605
Ple19I	CGATCG	1 cut(s)	375
PleI	GAGTC	4 cut(s)	427, 577, 823, 916
PluTI	GGCGCC	1 cut(s)	249
PmaCI	CACGTG	1 cut(s)	166
PmlI	CACGTG	1 cut(s)	166
PpsI	GAGTC	4 cut(s)	427, 577, 823, 916
Ppu21I	YACGTR	1 cut(s)	166
PscI	ACATGT	1 cut(s)	1887
Psp124BI	GAGCTC	1 cut(s)	223
Psp6I	CCWGG	4 cut(s)	285, 586, 605, 1631
PspCI	CACGTG	1 cut(s)	166
PspGI	CCWGG	4 cut(s)	285, 586, 605, 1631
PspN4I	GGNNCC	5 cut(s)	105, 247, 312, 516, 611
PspPI	GGNCC	5 cut(s)	590, 603, 609, 1549, 1901
PsrI	GAACNNNNNNTAC	2 cut(s)	613, 645
PstI	CTGCAG	2 cut(s)	1063, 1192
PstNI	CAGNNNCTG	1 cut(s)	878
PsyI	GACNNNGTC	1 cut(s)	1768
PteI	GCGCGC	1 cut(s)	387
PvuI	CGATCG	1 cut(s)	375
RgaI	GCGATCGC	1 cut(s)	375
RsaI	GTAC	3 cut(s)	864, 1049, 1294
RsaNI	GTAC	3 cut(s)	863, 1048, 1293
RseI	CAYNNNNRTG	2 cut(s)	1251, 1578
SacI	GAGCTC	1 cut(s)	223
SapI	GCTCTTC	1 cut(s)	1580
Sau3AI	GATC	8 cut(s)	328, 372, 713, 901, 1002, 1300, 1465, 1600
Sau96I	GGNCC	5 cut(s)	590, 603, 609, 1549, 1901
ScaI	AGTACT	1 cut(s)	1049
SchI	GAGTC	4 cut(s)	428, 577, 824, 917
ScrFI	CCNGG	5 cut(s)	287, 438, 588, 607, 1633
SduI	GDGCHC	4 cut(s)	150, 223, 889, 1282
SexAI	ACCWGGT	1 cut(s)	1631
SfaAI	GCGATCGC	1 cut(s)	375
SfaNI	GCATC	7 cut(s)	67, 1243, 1730, 1743, 1767, 1782, 1806
SfcI	CTRYAG	2 cut(s)	1059, 1188
SfoI	GGCGCC	1 cut(s)	247
SfuI	TTCGAA	1 cut(s)	1702
SgfI	GCGATCGC	1 cut(s)	375
SgrAI	CRCCGGYG	2 cut(s)	242, 248
SinI	GGWCC	4 cut(s)	590, 603, 609, 1901
SmiMI	CAYNNNNRTG	2 cut(s)	1251, 1578
SmlI	CTYRAG	3 cut(s)	120, 141, 685
SmoI	CTYRAG	3 cut(s)	120, 141, 685
Sse9I	AATT	8 cut(s)	81, 507, 642, 732, 759, 1159, 1296, 1875
SspDI	GGCGCC	1 cut(s)	245
SspMI	CTAG	2 cut(s)	129, 939
SstI	GAGCTC	1 cut(s)	223
StyD4I	CCNGG	5 cut(s)	285, 436, 586, 605, 1631
StyI	CCWWGG	2 cut(s)	717, 1477
TaaI	ACNGT	2 cut(s)	1527, 1901
TaiI	ACGT	4 cut(s)	168, 989, 1108, 1364
TaqI	TCGA	3 cut(s)	294, 354, 1702
TasI	AATT	8 cut(s)	81, 507, 642, 732, 759, 1159, 1296, 1875
TatI	WGTACW	3 cut(s)	862, 1047, 1292
TauI	GCSGC	6 cut(s)	365, 368, 371, 380, 383, 408
TfiI	GAWTC	8 cut(s)	20, 170, 268, 301, 334, 953, 1570, 1644
TscAI	CASTG	9 cut(s)	52, 157, 436, 702, 789, 1021, 1399, 1610, 1673
TseFI	GTSAC	3 cut(s)	982, 1106, 1442
TseI	GCWGC	7 cut(s)	656, 869, 878, 1058, 1413, 1590, 1593
Tsp45I	GTSAC	3 cut(s)	982, 1106, 1442
TspGWI	ACGGA	2 cut(s)	944, 1131
TspRI	CASTG	9 cut(s)	52, 157, 436, 702, 789, 1021, 1399, 1610, 1673
Tth111I	GACNNNGTC	1 cut(s)	1768
VpaK11BI	GGWCC	4 cut(s)	590, 603, 609, 1901
XagI	CCTNNNNNAGG	1 cut(s)	522
XapI	RAATTY	2 cut(s)	759, 1875
XceI	RCATGY	2 cut(s)	869, 1891
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1082
XmiI	GTMKAC	1 cut(s)	926
XspI	CTAG	2 cut(s)	129, 939
ZrmI	AGTACT	1 cut(s)	1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.