Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007443

Physical Location & Seq

Genomic Coordinates Reverse (-)

2857829 .. 2861428

Gene Structure 3600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG018200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1986 bp

ATGGCGTCGTCTTATCTCGGCGCCTGTACTCCACGCGCCTCCCAGTTCTCCTTACACATGCACAGACACCGATGCCCGATCCTTCTCGAGCAGTCGCGAACCGCGCCGTTCGCCGGAAACAGAGGAGTCAGCTTGAAGGTCAGGGCGGCGTCTTCGGATGGCGGCGGGGAATCGTACCTCGGAATGTGGAAGAAGGCGATGGAGAACGAGAAGAAGGCCGTCAAGTTCCAGAAAATCGTCGAGAATTCAGCTCCGGCGGACAACGACGTCGGCGGCGCCGGCGAGAGCATTGCGGAGAATCTGGAGCATAAGAGCCAGGAGTTCGAGAAGATTCTGGAGGTTCCGAAGGAGGAGAGGGATCGGATTCAGCGAATGCAGGTCGTCGATAGGGCCGCGGCGGCGATCGCGGCGGCTCGCGCGCTTTTGAAAGAGAGCGGCTTGAAGAAGGAGTCCGGTTCCGGTGAGCCGGGTTCGGGTGGAGTGAGGACTGAACCGGATTTGGGTGGAGTGAGGACTGAACCGGATTTGAGTGGAGCAATTGAGGCTCCTGATGAAGGAATGCAGGATGGGAGTATATCTGTGCCTCAGTCAGAAGAAAGTTCAGGAACTTGGACTCCAGGTCCAGACTTTTGGTCCTGGACCCCGCCGAGTAGTGATAGTTCAGATGATATAATTGACTTGCAGGCAGCGAAAAAGCCTTCAGCAAATCCAAACTTGAGTTTTCCAGTGAAGGAGAAAGAGCGATCCTTGGATGTTCTGTCAATTCCCCTTCAGAGTTATCTGTCTGAAATTCCTCTTCCCCCTTTGCAATCACTGAAGGAGGTCAAGAAAGTGGATGTCGCTGAGTCCACTTCCACAAAAGAGGAACATGAACTTGGACATGAGTTTTCAGTACATGCAGCAGAAGCTGCTCGTGCTCTTGATAAGGTGGATCAGGAGTCATTATCTGGTGTGTATACGGATGGAGCTAGGTGGTGGAAGGAATCTGGAGTTGAGCAAAGGCCGGATGGCGTGACGTGCAGGTGGACAATGATCAGAGGTGTCAGTGCTGACCAAGTTACTGAGTGGCAAGATAAGTACTGGGAGGCTGCAGATGAGTTAGGCCACAAGGAGCTTGGTTCAGAAAAATCAGGACGTGATGCATACGGAAATGTTTGGCGTGAACATTGGAAAGAAGCTATGTGGCAGGATTGTGGGCTTGTGCATATGGAGAAATCTGCAGACAAGTGGGGAAAGAATGGTAGAGGTGATGAATGGCAAGAGAAATGGTGGGAACATTATGATGCTTCAGGCCAAGCAGAGAAATGGGCTCATAAGTGGTGTACAATTGATCCAAACACACCAGTTGATGTTGGTCATGCTCACATTTGGCATGAAAGGTGGGGTGAAACGTATGATGGACATGGTGGGAGTAATAAATACACTGACAAATGGGCTGAACGCTGCGAGGGAGATGGTTGGTCAAAATGGGGTGACAAATGGGATGAACATTTTGATCCAAATGGCCATGGTGTGAAGCAGGGTGAAACATGGTGGGAAGGCAAGTATGGAGAGCGGTGGAACAAAACATGGGGCGAGGGCCACAATGGTTCAGGGTGGATTCATAAGTATGGGAAGAGCAGCAGCGGTGATCACTGGGATACACATGAGCAGGAAGACACCTGGTATGAGAGATTCCCTCACTTCGGTTTCTATCACTGCTTTGAAAACTCAGTTCAGCTCAGGGAAGTTCGAAAGCCATCAGAGATTGCATCGCAGATGTCTTCAGAGACTTCATCCGAGATGCCTTCTGAGACTTCGTCGGAGATGCCTTCATCAGAGATGCTTTCAGAGACTTCATCAGAGATGCCTCCAGAGACTTCATCTGAGATACCTTCAGAGACTTCATCGGAGATACCTTCAGAAATTCCATCGGACATGTCATCAGACGGTCCATTGGAGTTGCCCTCAGAGCTTCTATTGAAGAGACAATCAGAGGTGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

661

Amino Acids

73.91

Weight (kDa)

4.95

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55760 AT3G55760 AT3G55760
fragaria_vesca	FvH4_4g01790 FvH4_4g01790
malus_domestica	MD13G1202100.v1.1 MD16G1202300.v1.1
prunus_persica	Prupe.1G023800_v2.0.a1
pyrus_communis	pycom16g17070
rosa_chinensis	RchiOBHm_Chr4g0388701 RchiOBHm_Chr4g0388821
rosa_laevigata	RLG00000010026
rosa_multiflora	Rmu_sc0000697.1_g000013 Rmu_sc0010392.1_g000002 Rmu_sc0016023.1_g000002
rosa_roxburghii	Rroxscaffold_5G00335100
rosa_rugosa	Rorug03G0320100
rosa_samantha	Rh4AG024100 Rh4AG024900 Rh4BG017900 Rh4CG026900 Rh4CG027600 Rh4DG018200
rosa_wichuraiana	Rw4G001740 Rw4G001780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1011
AasI	GACNNNNNNGTC	1 cut(s)	266
AatII	GACGTC	1 cut(s)	270
Acc36I	ACCTGC	2 cut(s)	367, 1011
AccB1I	GGYRCC	2 cut(s)	20, 275
AccBSI	CCGCTC	2 cut(s)	435, 1555
AccI	GTMKAC	1 cut(s)	956
AccII	CGCG	7 cut(s)	36, 97, 104, 395, 407, 417, 419
AclWI	GGATC	6 cut(s)	73, 366, 738, 939, 1325, 1490
AcoI	YGGCCR	1 cut(s)	1504
AcsI	RAATTY	3 cut(s)	244, 789, 1905
AcuI	CTGAAG	7 cut(s)	684, 755, 836, 1272, 1749, 1860, 1884
AcyI	GRCGYC	5 cut(s)	5, 21, 149, 267, 276
AfaI	GTAC	5 cut(s)	28, 176, 894, 1079, 1324
AfiI	CCNNNNNNNGG	5 cut(s)	113, 473, 500, 554, 1685
AflIII	ACRYGT	1 cut(s)	1917
AgsI	TTSAA	5 cut(s)	136, 427, 442, 1706, 1963
AhdI	GACNNNNNGTC	2 cut(s)	618, 631
AjiI	CACGTC	2 cut(s)	1017, 1136
AjnI	CCWGG	4 cut(s)	315, 616, 635, 1661
AjuI	GAANNNNNNNTTGG	2 cut(s)	858, 890
AloI	GAACNNNNNNTCC	2 cut(s)	598, 630
AluBI	AGCT	8 cut(s)	132, 251, 908, 968, 1114, 1178, 1720, 1954
AluI	AGCT	8 cut(s)	132, 251, 908, 968, 1114, 1178, 1720, 1954
Alw21I	GWGCWC	1 cut(s)	919
Alw26I	GTCTC	6 cut(s)	1763, 1787, 1826, 1850, 1874, 1960
AlwI	GGATC	6 cut(s)	73, 366, 738, 939, 1325, 1490
AlwNI	CAGNNNCTG	1 cut(s)	908
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	8 cut(s)	216, 390, 1001, 1102, 1291, 1504, 1579, 1980
ApeKI	GCWGC	7 cut(s)	686, 899, 908, 1088, 1443, 1620, 1623
ApoI	RAATTY	3 cut(s)	244, 789, 1905
AsiSI	GCGATCGC	1 cut(s)	405
AspLEI	GCGC	6 cut(s)	23, 38, 106, 278, 419, 421
AspS9I	GGNCC	6 cut(s)	390, 620, 633, 639, 1579, 1931
AsuC2I	CCSGG	1 cut(s)	468
AsuHPI	GGTGA	6 cut(s)	473, 1259, 1397, 1484, 1535, 1640
AsuII	TTCGAA	1 cut(s)	1732
AvaI	CYCGRG	1 cut(s)	86
AvaII	GGWCC	4 cut(s)	620, 633, 639, 1931
BalI	TGGCCA	1 cut(s)	1506
BanI	GGYRCC	2 cut(s)	20, 275
BanII	GRGCYC	1 cut(s)	1312
BauI	CACGAG	1 cut(s)	912
BbsI	GAAGAC	3 cut(s)	144, 1662, 1755
Bbv12I	GWGCWC	1 cut(s)	919
BbvI	GCAGC	7 cut(s)	698, 895, 911, 1075, 1430, 1632, 1635
BccI	CCATC	9 cut(s)	152, 193, 560, 956, 1001, 1391, 1448, 1747, 1918
BceAI	ACGGC	2 cut(s)	91, 203
BcgI	CGANNNNNNTGC	2 cut(s)	272, 306
BciT130I	CCWGG	4 cut(s)	317, 618, 637, 1663
BciVI	GTATCC	1 cut(s)	1633
BclI	TGATCA	2 cut(s)	1032, 1630
BcnI	CCSGG	1 cut(s)	468
BcoDI	GTCTC	6 cut(s)	1763, 1787, 1826, 1850, 1874, 1960
BfaI	CTAG	1 cut(s)	969
BfmI	CTRYAG	2 cut(s)	1089, 1218
BfoI	RGCGCY	2 cut(s)	24, 279
BfuAI	ACCTGC	2 cut(s)	367, 1011
BfuI	GTATCC	1 cut(s)	1633
BglI	GCCNNNNNGGC	1 cut(s)	398
BmcAI	AGTACT	1 cut(s)	1079
Bme1390I	CCNGG	5 cut(s)	317, 468, 618, 637, 1663
Bme18I	GGWCC	4 cut(s)	620, 633, 639, 1931
BmeRI	GACNNNNNGTC	2 cut(s)	618, 631
BmeT110I	CYCGRG	1 cut(s)	86
BmgBI	CACGTC	2 cut(s)	1017, 1136
BmgT120I	GGNCC	6 cut(s)	390, 620, 633, 639, 1579, 1931
BmiI	GGNNCC	6 cut(s)	22, 277, 342, 457, 546, 641
BmrFI	CCNGG	5 cut(s)	317, 468, 618, 637, 1663
BmrI	ACTGGG	3 cut(s)	37, 1090, 1645
BmsI	GCATC	8 cut(s)	62, 1129, 1273, 1760, 1773, 1797, 1812, 1836
BmuI	ACTGGG	3 cut(s)	37, 1090, 1645
BpiI	GAAGAC	3 cut(s)	144, 1662, 1755
BplI	GAGNNNNNCTC	4 cut(s)	1663, 1695, 1931, 1963
BpmI	CTGGAG	5 cut(s)	323, 356, 600, 1008, 1836
Bpu10I	CCTNAGC	1 cut(s)	1721
Bpu14I	TTCGAA	1 cut(s)	1732
BpuEI	CTTGAG	1 cut(s)	736
BpuMI	CCSGG	1 cut(s)	468
BsaHI	GRCGYC	5 cut(s)	5, 21, 149, 267, 276
BsaJI	CCNNGG	4 cut(s)	178, 393, 747, 1507
BsaWI	WCCGGW	4 cut(s)	452, 458, 493, 520
BsaXI	ACNNNNNCTCC	2 cut(s)	598, 628
Bsc4I	CCNNNNNNNGG	5 cut(s)	113, 473, 500, 554, 1685
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	5 cut(s)	43, 725, 1085, 1343, 1640
Bse3DI	GCAATG	1 cut(s)	288
BseBI	CCWGG	4 cut(s)	317, 618, 637, 1663
BseDI	CCNNGG	4 cut(s)	178, 393, 747, 1507
BseGI	GGATG	8 cut(s)	163, 571, 757, 841, 967, 1012, 1489, 1775
BseLI	CCNNNNNNNGG	5 cut(s)	113, 473, 500, 554, 1685
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	8 cut(s)	599, 834, 1053, 1725, 1735, 1782, 1857, 1962
BseNI	ACTGG	5 cut(s)	43, 725, 1085, 1343, 1640
BsePI	GCGCGC	1 cut(s)	417
BseRI	GAGGAG	2 cut(s)	138, 365
BseXI	GCAGC	7 cut(s)	698, 895, 911, 1075, 1430, 1632, 1635
BsgI	GTGCAG	1 cut(s)	1039
Bsh1236I	CGCG	7 cut(s)	36, 97, 104, 395, 407, 417, 419
Bsh1285I	CGRYCG	1 cut(s)	405
BshFI	GGCC	8 cut(s)	218, 392, 1003, 1104, 1293, 1506, 1581, 1982
BshNI	GGYRCC	2 cut(s)	20, 275
BsiEI	CGRYCG	1 cut(s)	405
BsiHKAI	GWGCWC	1 cut(s)	919
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	9 cut(s)	114, 254, 279, 453, 459, 467, 494, 521, 1004
BslI	CCNNNNNNNGG	5 cut(s)	113, 473, 500, 554, 1685
BsmAI	GTCTC	6 cut(s)	1763, 1787, 1826, 1850, 1874, 1960
BsmI	GAATGC	2 cut(s)	378, 564
BsnI	GGCC	8 cut(s)	218, 392, 1003, 1104, 1293, 1506, 1581, 1982
BsoBI	CYCGRG	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	1732
Bsp1286I	GDGCHC	2 cut(s)	919, 1312
Bsp1407I	TGTACA	1 cut(s)	1322
Bsp143I	GATC	9 cut(s)	78, 358, 402, 743, 931, 1032, 1330, 1495, 1630
Bsp19I	CCATGG	1 cut(s)	1507
Bsp68I	TCGCGA	1 cut(s)	97
BspANI	GGCC	8 cut(s)	218, 392, 1003, 1104, 1293, 1506, 1581, 1982
BspCNI	CTCAG	8 cut(s)	598, 835, 1054, 1724, 1734, 1783, 1858, 1961
BspFNI	CGCG	7 cut(s)	36, 97, 104, 395, 407, 417, 419
BspLI	GGNNCC	6 cut(s)	22, 277, 342, 457, 546, 641
BspMAI	CTGCAG	2 cut(s)	1093, 1222
BspMI	ACCTGC	2 cut(s)	367, 1011
BspPI	GGATC	6 cut(s)	73, 366, 738, 939, 1325, 1490
BspQI	GCTCTTC	1 cut(s)	1610
BspT104I	TTCGAA	1 cut(s)	1732
BspT107I	GGYRCC	2 cut(s)	20, 275
BsrBI	CCGCTC	2 cut(s)	435, 1555
BsrDI	GCAATG	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	278
BsrGI	TGTACA	1 cut(s)	1322
BsrI	ACTGG	5 cut(s)	43, 725, 1085, 1343, 1640
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	4 cut(s)	178, 393, 747, 1507
BssHII	GCGCGC	1 cut(s)	417
BssMI	GATC	9 cut(s)	78, 358, 402, 743, 931, 1032, 1330, 1495, 1630
BssNAI	GTATAC	1 cut(s)	957
BssNI	GRCGYC	5 cut(s)	5, 21, 149, 267, 276
BssSI	CACGAG	1 cut(s)	912
BssT1I	CCWWGG	2 cut(s)	747, 1507
Bst1107I	GTATAC	1 cut(s)	957
Bst2BI	CACGAG	1 cut(s)	912
Bst2UI	CCWGG	4 cut(s)	317, 618, 637, 1663
Bst4CI	ACNGT	1 cut(s)	1931
Bst6I	CTCTTC	3 cut(s)	801, 1610, 1958
BstACI	GRCGYC	5 cut(s)	5, 21, 149, 267, 276
BstAPI	GCANNNNNTGC	1 cut(s)	908
BstAUI	TGTACA	1 cut(s)	1322
BstBI	TTCGAA	1 cut(s)	1732
BstC8I	GCNNGC	4 cut(s)	280, 415, 419, 684
BstDEI	CTNAG	8 cut(s)	585, 843, 1062, 1711, 1721, 1791, 1866, 1948
BstDSI	CCRYGG	2 cut(s)	393, 1507
BstENI	CCTNNNNNAGG	1 cut(s)	552
BstF5I	GGATG	8 cut(s)	163, 571, 757, 841, 967, 1012, 1489, 1775
BstFNI	CGCG	7 cut(s)	36, 97, 104, 395, 407, 417, 419
BstH2I	RGCGCY	2 cut(s)	24, 279
BstHHI	GCGC	6 cut(s)	23, 38, 106, 278, 419, 421
BstKTI	GATC	9 cut(s)	81, 361, 405, 746, 934, 1035, 1333, 1498, 1633
BstMAI	GTCTC	6 cut(s)	1763, 1787, 1826, 1850, 1874, 1960
BstMBI	GATC	9 cut(s)	78, 358, 402, 743, 931, 1032, 1330, 1495, 1630
BstMCI	CGRYCG	1 cut(s)	405
BstNI	CCWGG	4 cut(s)	317, 618, 637, 1663
BstNSI	RCATGY	3 cut(s)	61, 899, 1921
BstSCI	CCNGG	5 cut(s)	315, 466, 616, 635, 1661
BstSFI	CTRYAG	2 cut(s)	1089, 1218
BstUI	CGCG	7 cut(s)	36, 97, 104, 395, 407, 417, 419
BstV1I	GCAGC	7 cut(s)	698, 895, 911, 1075, 1430, 1632, 1635
BstV2I	GAAGAC	3 cut(s)	144, 1662, 1755
BstXI	CCANNNNNNTGG	1 cut(s)	630
BstZ17I	GTATAC	1 cut(s)	957
BsuI	GTATCC	1 cut(s)	1633
BsuRI	GGCC	8 cut(s)	218, 392, 1003, 1104, 1293, 1506, 1581, 1982
BtgI	CCRYGG	2 cut(s)	393, 1507
BtgZI	GCGATG	2 cut(s)	212, 1737
BtrI	CACGTC	2 cut(s)	1017, 1136
BtsCI	GGATG	8 cut(s)	163, 571, 757, 841, 967, 1012, 1489, 1775
BtsI	GCAGTG	1 cut(s)	1696
BtsIMutI	CAGTG	6 cut(s)	732, 812, 1051, 1422, 1633, 1696
BtuMI	TCGCGA	1 cut(s)	97
BveI	ACCTGC	2 cut(s)	367, 1011
Cac8I	GCNNGC	4 cut(s)	280, 415, 419, 684
CaiI	CAGNNNCTG	1 cut(s)	908
CfoI	GCGC	6 cut(s)	23, 38, 106, 278, 419, 421
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	6 cut(s)	390, 620, 633, 639, 1579, 1931
Cfr42I	CCGCGG	1 cut(s)	396
CseI	GACGC	1 cut(s)	138
CsiI	ACCWGGT	1 cut(s)	1661
Csp6I	GTAC	5 cut(s)	27, 175, 893, 1078, 1323
CviQI	GTAC	5 cut(s)	27, 175, 893, 1078, 1323
DdeI	CTNAG	8 cut(s)	585, 843, 1062, 1711, 1721, 1791, 1866, 1948
DinI	GGCGCC	2 cut(s)	22, 277
DpnI	GATC	9 cut(s)	80, 360, 404, 745, 933, 1034, 1332, 1497, 1632
DpnII	GATC	9 cut(s)	78, 358, 402, 743, 931, 1032, 1330, 1495, 1630
DrdI	GACNNNNNNGTC	1 cut(s)	266
DriI	GACNNNNNGTC	2 cut(s)	618, 631
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	1 cut(s)	1504
Eam1104I	CTCTTC	3 cut(s)	801, 1610, 1958
Eam1105I	GACNNNNNGTC	2 cut(s)	618, 631
EarI	CTCTTC	3 cut(s)	801, 1610, 1958
EciI	GGCGGA	1 cut(s)	272
Eco130I	CCWWGG	2 cut(s)	747, 1507
Eco24I	GRGCYC	1 cut(s)	1312
Eco47I	GGWCC	4 cut(s)	620, 633, 639, 1931
Eco57I	CTGAAG	7 cut(s)	684, 755, 836, 1272, 1749, 1860, 1884
Eco88I	CYCGRG	1 cut(s)	86
EcoNI	CCTNNNNNAGG	1 cut(s)	552
EcoRI	GAATTC	1 cut(s)	244
EcoRII	CCWGG	4 cut(s)	315, 616, 635, 1661
EcoT14I	CCWWGG	2 cut(s)	747, 1507
EcoT22I	ATGCAT	1 cut(s)	1144
EcoT38I	GRGCYC	1 cut(s)	1312
EgeI	GGCGCC	2 cut(s)	22, 277
EheI	GGCGCC	2 cut(s)	22, 277
ErhI	CCWWGG	2 cut(s)	747, 1507
FauI	CCCGC	2 cut(s)	158, 651
FauNDI	CATATG	1 cut(s)	1206
FbaI	TGATCA	2 cut(s)	1032, 1630
FblI	GTMKAC	1 cut(s)	956
FokI	GGATG	8 cut(s)	170, 578, 764, 848, 974, 1019, 1496, 1762
FriOI	GRGCYC	1 cut(s)	1312
FspBI	CTAG	1 cut(s)	969
GlaI	GCGC	6 cut(s)	22, 37, 105, 277, 418, 420
GsuI	CTGGAG	5 cut(s)	323, 356, 600, 1008, 1836
HaeII	RGCGCY	2 cut(s)	24, 279
HaeIII	GGCC	8 cut(s)	218, 392, 1003, 1104, 1293, 1506, 1581, 1982
HapII	CCGG	9 cut(s)	114, 254, 279, 453, 459, 467, 494, 521, 1004
HgaI	GACGC	1 cut(s)	138
HhaI	GCGC	6 cut(s)	23, 38, 106, 278, 419, 421
Hin1I	GRCGYC	5 cut(s)	5, 21, 149, 267, 276
Hin6I	GCGC	6 cut(s)	21, 36, 104, 276, 417, 419
HinP1I	GCGC	6 cut(s)	21, 36, 104, 276, 417, 419
HpaII	CCGG	9 cut(s)	114, 254, 279, 453, 459, 467, 494, 521, 1004
HphI	GGTGA	6 cut(s)	473, 1259, 1397, 1484, 1535, 1640
Hpy166II	GTNNAC	5 cut(s)	849, 957, 1026, 1163, 1323
Hpy8I	GTNNAC	5 cut(s)	849, 957, 1026, 1163, 1323
Hpy99I	CGWCG	6 cut(s)	10, 242, 269, 272, 386, 1804
HpyCH4III	ACNGT	1 cut(s)	1931
HpyCH4IV	ACGT	4 cut(s)	267, 1016, 1135, 1391
HpyF3I	CTNAG	8 cut(s)	585, 843, 1062, 1711, 1721, 1791, 1866, 1948
HpySE526I	ACGT	4 cut(s)	267, 1016, 1135, 1391
Hsp92I	GRCGYC	5 cut(s)	5, 21, 149, 267, 276
HspAI	GCGC	6 cut(s)	21, 36, 104, 276, 417, 419
KasI	GGCGCC	2 cut(s)	20, 275
KroI	GCCGGC	1 cut(s)	278
KroNI	GCCGGC	1 cut(s)	280
Ksp22I	TGATCA	2 cut(s)	1032, 1630
KspI	CCGCGG	1 cut(s)	396
Kzo9I	GATC	9 cut(s)	78, 358, 402, 743, 931, 1032, 1330, 1495, 1630
LguI	GCTCTTC	1 cut(s)	1610
LmnI	GCTCC	6 cut(s)	256, 304, 533, 550, 965, 1111
Lsp1109I	GCAGC	7 cut(s)	698, 895, 911, 1075, 1430, 1632, 1635
LweI	GCATC	8 cut(s)	62, 1129, 1273, 1760, 1773, 1797, 1812, 1836
MabI	ACCWGGT	1 cut(s)	1661
MaeI	CTAG	1 cut(s)	969
MaeII	ACGT	4 cut(s)	267, 1016, 1135, 1391
MaeIII	GTNAC	3 cut(s)	1012, 1057, 1472
MalI	GATC	9 cut(s)	80, 360, 404, 745, 933, 1034, 1332, 1497, 1632
MbiI	CCGCTC	2 cut(s)	435, 1555
MboI	GATC	9 cut(s)	78, 358, 402, 743, 931, 1032, 1330, 1495, 1630
MfeI	CAATTG	2 cut(s)	537, 1326
MhlI	GDGCHC	2 cut(s)	919, 1312
MlsI	TGGCCA	1 cut(s)	1506
MluCI	AATT	7 cut(s)	244, 537, 672, 762, 789, 1326, 1905
MluNI	TGGCCA	1 cut(s)	1506
Mly113I	GGCGCC	2 cut(s)	21, 276
MlyI	GAGTC	5 cut(s)	135, 458, 607, 854, 947
MmeI	TCCRAC	1 cut(s)	1782
Mox20I	TGGCCA	1 cut(s)	1506
Mph1103I	ATGCAT	1 cut(s)	1144
MreI	CGCCGGCG	1 cut(s)	278
MroNI	GCCGGC	1 cut(s)	278
MscI	TGGCCA	1 cut(s)	1506
MslI	CAYNNNNRTG	2 cut(s)	1281, 1608
Msp20I	TGGCCA	1 cut(s)	1506
MspA1I	CMGCKG	2 cut(s)	395, 1626
MspI	CCGG	9 cut(s)	114, 254, 279, 453, 459, 467, 494, 521, 1004
MspR9I	CCNGG	5 cut(s)	317, 468, 618, 637, 1663
MunI	CAATTG	2 cut(s)	537, 1326
Mva1269I	GAATGC	2 cut(s)	378, 564
MvaI	CCWGG	4 cut(s)	317, 618, 637, 1663
MvnI	CGCG	7 cut(s)	36, 97, 104, 395, 407, 417, 419
NaeI	GCCGGC	1 cut(s)	280
NarI	GGCGCC	2 cut(s)	21, 276
NciI	CCSGG	1 cut(s)	468
NcoI	CCATGG	1 cut(s)	1507
NdeI	CATATG	1 cut(s)	1206
NdeII	GATC	9 cut(s)	78, 358, 402, 743, 931, 1032, 1330, 1495, 1630
NgoMIV	GCCGGC	1 cut(s)	278
NlaIV	GGNNCC	6 cut(s)	22, 277, 342, 457, 546, 641
NmeAIII	GCCGAG	1 cut(s)	672
NmuCI	GTSAC	2 cut(s)	1012, 1472
NruI	TCGCGA	1 cut(s)	97
NsiI	ATGCAT	1 cut(s)	1144
NspI	RCATGY	3 cut(s)	61, 899, 1921
NspV	TTCGAA	1 cut(s)	1732
PaeR7I	CTCGAG	1 cut(s)	86
PaqCI	CACCTGC	1 cut(s)	1011
PauI	GCGCGC	1 cut(s)	417
PciI	ACATGT	1 cut(s)	1917
PciSI	GCTCTTC	1 cut(s)	1610
PcsI	WCGNNNNNNNCGW	1 cut(s)	367
PctI	GAATGC	2 cut(s)	378, 564
PdiI	GCCGGC	1 cut(s)	280
PfeI	GAWTC	7 cut(s)	170, 298, 331, 364, 983, 1600, 1674
PflFI	GACNNNGTC	1 cut(s)	1798
PfoI	TCCNGGA	1 cut(s)	635
Ple19I	CGATCG	1 cut(s)	405
PleI	GAGTC	5 cut(s)	134, 457, 607, 853, 946
PluTI	GGCGCC	2 cut(s)	24, 279
PpsI	GAGTC	5 cut(s)	134, 457, 607, 853, 946
PscI	ACATGT	1 cut(s)	1917
Psp6I	CCWGG	4 cut(s)	315, 616, 635, 1661
PspGI	CCWGG	4 cut(s)	315, 616, 635, 1661
PspN4I	GGNNCC	6 cut(s)	22, 277, 342, 457, 546, 641
PspPI	GGNCC	6 cut(s)	390, 620, 633, 639, 1579, 1931
PsrI	GAACNNNNNNTAC	2 cut(s)	643, 675
PstI	CTGCAG	2 cut(s)	1093, 1222
PstNI	CAGNNNCTG	1 cut(s)	908
PsyI	GACNNNGTC	1 cut(s)	1798
PteI	GCGCGC	1 cut(s)	417
PvuI	CGATCG	1 cut(s)	405
RgaI	GCGATCGC	1 cut(s)	405
RruI	TCGCGA	1 cut(s)	97
RsaI	GTAC	5 cut(s)	28, 176, 894, 1079, 1324
RsaNI	GTAC	5 cut(s)	27, 175, 893, 1078, 1323
RseI	CAYNNNNRTG	2 cut(s)	1281, 1608
SacII	CCGCGG	1 cut(s)	396
SapI	GCTCTTC	1 cut(s)	1610
Sau3AI	GATC	9 cut(s)	78, 358, 402, 743, 931, 1032, 1330, 1495, 1630
Sau96I	GGNCC	6 cut(s)	390, 620, 633, 639, 1579, 1931
ScaI	AGTACT	1 cut(s)	1079
SchI	GAGTC	5 cut(s)	135, 458, 607, 854, 947
ScrFI	CCNGG	5 cut(s)	317, 468, 618, 637, 1663
SduI	GDGCHC	2 cut(s)	919, 1312
SexAI	ACCWGGT	1 cut(s)	1661
SfaAI	GCGATCGC	1 cut(s)	405
SfaNI	GCATC	8 cut(s)	62, 1129, 1273, 1760, 1773, 1797, 1812, 1836
SfcI	CTRYAG	2 cut(s)	1089, 1218
SfoI	GGCGCC	2 cut(s)	22, 277
Sfr274I	CTCGAG	1 cut(s)	86
Sfr303I	CCGCGG	1 cut(s)	396
SfuI	TTCGAA	1 cut(s)	1732
SgfI	GCGATCGC	1 cut(s)	405
SgrAI	CRCCGGYG	1 cut(s)	278
SgrBI	CCGCGG	1 cut(s)	396
SinI	GGWCC	4 cut(s)	620, 633, 639, 1931
SlaI	CTCGAG	1 cut(s)	86
SmiMI	CAYNNNNRTG	2 cut(s)	1281, 1608
SmlI	CTYRAG	2 cut(s)	86, 715
SmoI	CTYRAG	2 cut(s)	86, 715
Sse9I	AATT	7 cut(s)	244, 537, 672, 762, 789, 1326, 1905
SspDI	GGCGCC	2 cut(s)	20, 275
SspMI	CTAG	1 cut(s)	969
StyD4I	CCNGG	5 cut(s)	315, 466, 616, 635, 1661
StyI	CCWWGG	2 cut(s)	747, 1507
TaaI	ACNGT	1 cut(s)	1931
TaiI	ACGT	4 cut(s)	270, 1019, 1138, 1394
TaqI	TCGA	5 cut(s)	87, 240, 324, 384, 1732
TasI	AATT	7 cut(s)	244, 537, 672, 762, 789, 1326, 1905
TatI	WGTACW	4 cut(s)	26, 892, 1077, 1322
TauI	GCSGC	9 cut(s)	149, 165, 276, 395, 398, 401, 410, 413, 438
TfiI	GAWTC	7 cut(s)	170, 298, 331, 364, 983, 1600, 1674
TscAI	CASTG	6 cut(s)	732, 819, 1051, 1429, 1640, 1703
TseFI	GTSAC	2 cut(s)	1012, 1472
TseI	GCWGC	7 cut(s)	686, 899, 908, 1088, 1443, 1620, 1623
Tsp45I	GTSAC	2 cut(s)	1012, 1472
TspGWI	ACGGA	2 cut(s)	974, 1161
TspRI	CASTG	6 cut(s)	732, 819, 1051, 1429, 1640, 1703
Tth111I	GACNNNGTC	1 cut(s)	1798
VpaK11BI	GGWCC	4 cut(s)	620, 633, 639, 1931
XagI	CCTNNNNNAGG	1 cut(s)	552
XapI	RAATTY	3 cut(s)	244, 789, 1905
XceI	RCATGY	3 cut(s)	61, 899, 1921
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1112
XhoI	CTCGAG	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	956
XspI	CTAG	1 cut(s)	969
ZraI	GACGTC	1 cut(s)	268
ZrmI	AGTACT	1 cut(s)	1079
Zsp2I	ATGCAT	1 cut(s)	1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.