Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009972

Physical Location & Seq

Genomic Coordinates Reverse (-)

38522468 .. 38530544

Gene Structure 8077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38458

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2295 bp

ATGGCCAAGGAGGAGCAGCTAGCGGAGCTTCTGGAAACCCTAGGCGACTTCACAAGCAAAGAGAACTGGGACAAGTTCTTCACCATCCGAGGCACCGAAGACGCCTTCGAGTGGTACGCCGGGTGGTCCGAGCTCCGAGACCCTTTGCTCTCCCACCTCCCGCCAAAACCCCAAATCCTCGTCCCCGGCTGCGGCAGCTCCCGCCTCTCCGAGCACCTCTACGACGCCGGCTTCACCTCCATCACCAACATCGACTTCTCCAAGGTCGCCATTTCCGATTGCCTCCGCCGCAATGTGCGCCTCAGGCCCCTAATGCGGTGGCGCGTCATGGACATGACCGCCATGCAGCTTGAGGATGAGGCATTTGATGCTGTGGTTGACAAAGGTGGATTGGATGCGTTAATGGAGCCGGAGCTTGGCCCTAAGTTAGGGGATCAATATTTATCAGAGGTTAGAAGAGTTTTGAAGTCTGGAGGGAAATTTATTTGCCTTACATTGGCGGAGTCGCATGTTCTGGCTCTGCTTTTCCCGAAGTTCCGGTTTGGGTGGAAAATTAGTGTCCATGCAATACCTCACAAACCGTCTAGTAAGCCAAGTCTTCAAGCGTTTATGGTGGTTGCTGTAAAAGAGATGTCCTCTGAGTTGCAGGAGATCACATCCTCATTCAATAAGTCTTCTCTTGCTTGTAGAGGAAGTCAGGGTCGTGGACTTCTTGAAGCTGTTGAAAATGAGAATCAAATTCGTAGAGAATACTCCTCTGCTTCAGATATACAGCACTCTCTTGAAGACTTAAAACTTGGAGCTAGAGGAGATTTAACTAAGCTTCGCCCGGGTCGTTGTTTTCAGCTTACTTTGTGTGGGGGCTCCCACTTCAGTTGCAGAGCTGTAGTTCTTGATGCTAAGGAAAACTCTGGCCCCTTTGTATATCACTGTGGGGTTTTTATTGTGCCTAAGACTCGGGCTCATGAATGGCTGTTCTCTTCTGAAGAAGGACAATGGATGGTAGTAGAAAGCTCAAAGGCAGCTCGTCTAGTAATGGTTTTATTAGATGCCAGCCATGTTAGTGCGAGCATGGATGATATTCAGAAGGAATTATCGCCTTTGGTTAAACAATTGGCGCCTGGAAAAGATGACAATGGAGCTCAAATTCCATTCATGATGGCAAGTGATGGGATCAAACAACGAGATATTGTGCACCAGGTCACATCCTCAATAACTGGACCAATAATAGTTGAGGACGTGATTTATGAAACTGATAATGGTGATATCAGTCGCATTCTACCATCCAGAGATTTGACATTTCGTCGCCTTGTCTTCCAAAGAAGTGAGGGTCTGGTTCAGTCTGAAGCTCTTCTGTCAGAGGAAGGATCGAAATATAAAATTGTTGGTCAGGGTGAGAAGAAAAAAACAAATTCATCTTCCAAATCTAAAAAAAGAGGAATCCAGAGACAAAGTGATGGGACGAGTCACCAGCTGAAGGTGTATCATGGGTATTTGGCTAGTTCTTATCATACAGGGATTATTTCTGGATTAATGTTGATTTCATCTTATTTGGAAAGCATGGTGTCAACACAAAAATCAGTCAAAACAGTTGTTATTGGTCTTGGAGCAGGTTTACTTCCTATGTTCCTTCATAAATGTATGCCCTTTATGCACATTGAGGCGGTGGAGTTGGATCCCATAGTCATCAAACTTGCAGAAGAATACTTTAGTTTCATCGAAGATGATCACTTGCAGGTGCACATTGCTGATGGGATTCAGTATCTCACAAAAGCTGTACATTTTGCTGCGGAGGATGAAAAGTGTGCTGTTCGAGGAAATGAGGATGGTCACTGCAATTCTGACCCCCCATCTTCTAATGGAAGCCATTTGGCATTTCATGTAGAAGGCCAGGGAATTTCGAAGGTAGACATAGTCATTATTGATGTGGATTCTGCCGACTCAAGTTCTGGAATGACCTGCCCTGCAGCTGATTTTGTGGACGAGTCGTTTCTTCGGACTGTGAAGGATGCCCTTACTGAGAAGGGTCTATTTATTATAAATTTGGTTTCACGGTCCCAAGACATTAAAGACACTGTTATTTCAAGGATGCAAATGGTGTTTAGCCATCTCTTCTGCCTCCAGCTTGAAGAAGATGTCAATGAAGTTATTTTTGCCCTTCCTTCAGCTTCCTGTATCAAGGAGGATGGCTTCACCAAAGCCACTCTTCAACTTGAGAAATTGTTAAAATTGGAGCACCCGGAGATAAGCCAAAGCATTATAGATGCTACAAAGAAGATAAGACATCTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25 Spermine_synth

Protein Analysis

764

Amino Acids

84.88

Weight (kDa)

5.81

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_25	PF13649	59 - 159	4.6e-11	Methyltransferase domain
Methyltransf_31	PF13847	60 - 167	6.7e-08	Methyltransferase domain
Methyltransf_11	PF08241	62 - 163	3.6e-13	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31740 AT2G31740
fragaria_vesca	FvH4_4g13510
malus_domestica	MD01G1010300.v1.1 MD04G1013700.v1.1
prunus_persica	Prupe.1G159900_v2.0.a1 Prupe.1G159900_v2.0.a1 Prupe.1G159900_v2.0.a1
pyrus_communis	pycom04g01070
rosa_chinensis	RchiOBHm_Chr4g0414141
rosa_laevigata	RLG00000008167
rosa_multiflora	Rmu_sc0000808.1_g000057 Rmu_sc0008865.1_g000003
rosa_roxburghii	Rroxscaffold_5G00358100
rosa_rugosa	Rorug04G0126400 Rorug04G0126500
rosa_samantha	Rh4AG184600 Rh4BG184000 Rh4CG196300 Rh4DG179900
rosa_wichuraiana	Rw4G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2039
AarI	CACCTGC	1 cut(s)	1726
Acc36I	ACCTGC	3 cut(s)	1601, 1726, 1967
AccB1I	GGYRCC	2 cut(s)	92, 1117
AccI	GTMKAC	1 cut(s)	1908
AccII	CGCG	1 cut(s)	324
AclWI	GGATC	5 cut(s)	441, 1181, 1375, 1670, 1683
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	6 cut(s)	479, 738, 1146, 1411, 1896, 2041
AcuI	CTGAAG	6 cut(s)	747, 856, 1005, 1365, 1496, 2148
AcyI	GRCGYC	3 cut(s)	102, 225, 1118
AfaI	GTAC	2 cut(s)	116, 1779
AfiI	CCNNNNNNNGG	7 cut(s)	111, 191, 315, 416, 428, 496, 1477
AgsI	TTSAA	9 cut(s)	466, 602, 667, 716, 725, 785, 2085, 2129, 2210
AhdI	GACNNNNNGTC	1 cut(s)	1302
AjiI	CACGTC	1 cut(s)	1240
AjnI	CCWGG	3 cut(s)	1120, 1197, 1890
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
Alw21I	GWGCWC	6 cut(s)	135, 216, 1144, 1197, 1743, 2238
Alw26I	GTCTC	2 cut(s)	132, 1441
Alw44I	GTGCAC	2 cut(s)	1193, 1739
AlwI	GGATC	5 cut(s)	441, 1181, 1375, 1670, 1683
Ama87I	CYCGRG	2 cut(s)	829, 957
AoxI	GGCC	5 cut(s)	3, 305, 418, 913, 1888
ApaLI	GTGCAC	2 cut(s)	1193, 1739
ApeKI	GCWGC	7 cut(s)	16, 189, 195, 346, 1022, 1787, 1967
ApoI	RAATTY	6 cut(s)	479, 738, 1146, 1411, 1896, 2041
AseI	ATTAAT	1 cut(s)	1532
Asp700I	GAANNNNTTC	1 cut(s)	1350
AspA2I	CCTAGG	1 cut(s)	40
AspLEI	GCGC	3 cut(s)	300, 324, 1120
AspS9I	GGNCC	6 cut(s)	126, 306, 419, 914, 1220, 2055
AsuC2I	CCSGG	5 cut(s)	121, 186, 830, 831, 2240
AsuHPI	GGTGA	7 cut(s)	73, 226, 235, 1274, 1406, 1460, 2185
AsuII	TTCGAA	1 cut(s)	1901
AsuNHI	GCTAGC	1 cut(s)	19
AvaI	CYCGRG	2 cut(s)	829, 957
AvaII	GGWCC	3 cut(s)	126, 1220, 2055
AvrII	CCTAGG	1 cut(s)	40
AxyI	CCTNAGG	1 cut(s)	302
BaeGI	GKGCMC	2 cut(s)	1197, 1743
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	1675
BanI	GGYRCC	2 cut(s)	92, 1117
BanII	GRGCYC	4 cut(s)	135, 866, 964, 1144
BbsI	GAAGAC	5 cut(s)	105, 590, 666, 792, 1306
Bbv12I	GWGCWC	6 cut(s)	135, 216, 1144, 1197, 1743, 2238
BbvI	GCAGC	7 cut(s)	28, 176, 207, 358, 1034, 1774, 1979
BciT130I	CCWGG	3 cut(s)	1122, 1199, 1892
BclI	TGATCA	1 cut(s)	1726
BcnI	CCSGG	5 cut(s)	121, 186, 830, 831, 2240
BcoDI	GTCTC	2 cut(s)	132, 1441
BfaI	CTAG	6 cut(s)	20, 41, 585, 804, 1031, 1500
BfmI	CTRYAG	2 cut(s)	885, 1965
BfoI	RGCGCY	1 cut(s)	1121
BfuAI	ACCTGC	3 cut(s)	1601, 1726, 1967
BisI	GCNGC	9 cut(s)	17, 190, 193, 196, 289, 347, 1023, 1788, 1968
BlnI	CCTAGG	1 cut(s)	40
BlsI	GCNGC	9 cut(s)	18, 191, 194, 197, 290, 348, 1024, 1789, 1969
Bme1390I	CCNGG	8 cut(s)	121, 186, 830, 831, 1122, 1199, 1892, 2240
Bme18I	GGWCC	3 cut(s)	126, 1220, 2055
BmeRI	GACNNNNNGTC	1 cut(s)	1302
BmeT110I	CYCGRG	2 cut(s)	829, 957
BmgBI	CACGTC	1 cut(s)	1240
BmgT120I	GGNCC	6 cut(s)	126, 306, 419, 914, 1220, 2055
BmiI	GGNNCC	8 cut(s)	94, 308, 408, 865, 916, 1119, 1677, 2057
BmrFI	CCNGG	8 cut(s)	121, 186, 830, 831, 1122, 1199, 1892, 2240
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	7 cut(s)	358, 385, 886, 1039, 1999, 2079, 2254
BmtI	GCTAGC	1 cut(s)	23
BmuI	ACTGGG	1 cut(s)	76
BpiI	GAAGAC	5 cut(s)	105, 590, 666, 792, 1306
BplI	GAGNNNNNCTC	2 cut(s)	620, 652
BpmI	CTGGAG	2 cut(s)	492, 2105
Bpu10I	CCTNAGC	1 cut(s)	900
Bpu14I	TTCGAA	1 cut(s)	1901
BpuEI	CTTGAG	3 cut(s)	371, 1927, 2234
BpuMI	CCSGG	5 cut(s)	121, 186, 830, 831, 2240
BsaHI	GRCGYC	3 cut(s)	102, 225, 1118
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	7 cut(s)	6, 40, 88, 184, 261, 829, 1891
BsaWI	WCCGGW	1 cut(s)	537
Bsc4I	CCNNNNNNNGG	7 cut(s)	111, 191, 315, 416, 428, 496, 1477
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	2 cut(s)	71, 1222
Bse21I	CCTNAGG	1 cut(s)	302
Bse3DI	GCAATG	2 cut(s)	298, 1743
BseBI	CCWGG	3 cut(s)	1122, 1199, 1892
BseDI	CCNNGG	7 cut(s)	6, 40, 88, 184, 261, 829, 1891
BseLI	CCNNNNNNNGG	7 cut(s)	111, 191, 315, 416, 428, 496, 1477
BseMI	GCAATG	2 cut(s)	298, 1743
BseMII	CTCAG	3 cut(s)	316, 630, 2010
BseNI	ACTGG	2 cut(s)	71, 1222
BseRI	GAGGAG	3 cut(s)	26, 745, 822
BseSI	GKGCMC	2 cut(s)	1197, 1743
BseXI	GCAGC	7 cut(s)	28, 176, 207, 358, 1034, 1774, 1979
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	5 cut(s)	5, 307, 420, 915, 1890
BshNI	GGYRCC	2 cut(s)	92, 1117
BsiHKAI	GWGCWC	6 cut(s)	135, 216, 1144, 1197, 1743, 2238
BsiHKCI	CYCGRG	2 cut(s)	829, 957
BsiSI	CCGG	7 cut(s)	120, 186, 228, 410, 538, 830, 2240
BslFI	GGGAC	4 cut(s)	83, 167, 1474, 2041
BslI	CCNNNNNNNGG	7 cut(s)	111, 191, 315, 416, 428, 496, 1477
BsmAI	GTCTC	2 cut(s)	132, 1441
BsmFI	GGGAC	4 cut(s)	83, 167, 1474, 2041
BsmI	GAATGC	1 cut(s)	1275
BsnI	GGCC	5 cut(s)	5, 307, 420, 915, 1890
Bso31I	GGTCTC	1 cut(s)	132
BsoBI	CYCGRG	2 cut(s)	829, 957
Bsp119I	TTCGAA	1 cut(s)	1901
Bsp1286I	GDGCHC	8 cut(s)	135, 216, 866, 964, 1144, 1197, 1743, 2238
Bsp1407I	TGTACA	1 cut(s)	1777
Bsp143I	GATC	6 cut(s)	433, 651, 1173, 1367, 1675, 1726
BspANI	GGCC	5 cut(s)	5, 307, 420, 915, 1890
BspCNI	CTCAG	3 cut(s)	315, 631, 2011
BspFNI	CGCG	1 cut(s)	324
BspHI	TCATGA	2 cut(s)	964, 1155
BspLI	GGNNCC	8 cut(s)	94, 308, 408, 865, 916, 1119, 1677, 2057
BspMAI	CTGCAG	1 cut(s)	1969
BspMI	ACCTGC	3 cut(s)	1601, 1726, 1967
BspOI	GCTAGC	1 cut(s)	23
BspPI	GGATC	5 cut(s)	441, 1181, 1375, 1670, 1683
BspQI	GCTCTTC	1 cut(s)	1356
BspT104I	TTCGAA	1 cut(s)	1901
BspT107I	GGYRCC	2 cut(s)	92, 1117
BspTNI	GGTCTC	1 cut(s)	132
BsrDI	GCAATG	2 cut(s)	298, 1743
BsrFI	RCCGGY	1 cut(s)	227
BsrGI	TGTACA	1 cut(s)	1777
BsrI	ACTGG	2 cut(s)	71, 1222
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	7 cut(s)	6, 40, 88, 184, 261, 829, 1891
BssMI	GATC	6 cut(s)	433, 651, 1173, 1367, 1675, 1726
BssNI	GRCGYC	3 cut(s)	102, 225, 1118
BssT1I	CCWWGG	3 cut(s)	6, 40, 261
Bst2UI	CCWGG	3 cut(s)	1122, 1199, 1892
Bst4CI	ACNGT	6 cut(s)	582, 932, 1591, 2002, 2055, 2077
Bst6I	CTCTTC	5 cut(s)	451, 985, 1356, 2117, 2211
BstACI	GRCGYC	3 cut(s)	102, 225, 1118
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstAUI	TGTACA	1 cut(s)	1777
BstBI	TTCGAA	1 cut(s)	1901
BstC8I	GCNNGC	4 cut(s)	21, 229, 1054, 1069
BstDEI	CTNAG	7 cut(s)	302, 423, 639, 819, 900, 951, 2019
BstENI	CCTNNNNNAGG	1 cut(s)	426
BstFNI	CGCG	1 cut(s)	324
BstH2I	RGCGCY	1 cut(s)	1121
BstHHI	GCGC	3 cut(s)	300, 324, 1120
BstKTI	GATC	6 cut(s)	436, 654, 1176, 1370, 1678, 1729
BstMAI	GTCTC	2 cut(s)	132, 1441
BstMBI	GATC	6 cut(s)	433, 651, 1173, 1367, 1675, 1726
BstMWI	GCNNNNNNNGC	9 cut(s)	25, 195, 201, 288, 297, 304, 313, 368, 1651
BstNI	CCWGG	3 cut(s)	1122, 1199, 1892
BstNSI	RCATGY	1 cut(s)	512
BstSCI	CCNGG	8 cut(s)	119, 184, 828, 829, 1120, 1197, 1890, 2238
BstSFI	CTRYAG	2 cut(s)	885, 1965
BstSLI	GKGCMC	2 cut(s)	1197, 1743
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	7 cut(s)	28, 176, 207, 358, 1034, 1774, 1979
BstV2I	GAAGAC	5 cut(s)	105, 590, 666, 792, 1306
BstX2I	RGATCY	1 cut(s)	1675
BstYI	RGATCY	1 cut(s)	1675
Bsu36I	CCTNAGG	1 cut(s)	302
BsuRI	GGCC	5 cut(s)	5, 307, 420, 915, 1890
BtrI	CACGTC	1 cut(s)	1240
BtsI	GCAGTG	1 cut(s)	1831
BtsIMutI	CAGTG	3 cut(s)	928, 1831, 2073
BveI	ACCTGC	3 cut(s)	1601, 1726, 1967
Cac8I	GCNNGC	4 cut(s)	21, 229, 1054, 1069
CciI	TCATGA	2 cut(s)	964, 1155
CfoI	GCGC	3 cut(s)	300, 324, 1120
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	6 cut(s)	126, 306, 419, 914, 1220, 2055
Cfr9I	CCCGGG	1 cut(s)	829
CseI	GACGC	3 cut(s)	110, 233, 313
CsiI	ACCWGGT	1 cut(s)	1197
Csp6I	GTAC	2 cut(s)	115, 1778
CspCI	CAANNNNNGTGG	2 cut(s)	857, 892
CviQI	GTAC	2 cut(s)	115, 1778
DdeI	CTNAG	7 cut(s)	302, 423, 639, 819, 900, 951, 2019
DinI	GGCGCC	1 cut(s)	1119
DpnI	GATC	6 cut(s)	435, 653, 1175, 1369, 1677, 1728
DpnII	GATC	6 cut(s)	433, 651, 1173, 1367, 1675, 1726
DriI	GACNNNNNGTC	1 cut(s)	1302
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	5 cut(s)	451, 985, 1356, 2117, 2211
Eam1105I	GACNNNNNGTC	1 cut(s)	1302
EarI	CTCTTC	5 cut(s)	451, 985, 1356, 2117, 2211
EciI	GGCGGA	2 cut(s)	275, 515
Ecl136II	GAGCTC	2 cut(s)	133, 1142
Eco130I	CCWWGG	3 cut(s)	6, 40, 261
Eco24I	GRGCYC	4 cut(s)	135, 866, 964, 1144
Eco31I	GGTCTC	1 cut(s)	132
Eco32I	GATATC	1 cut(s)	1267
Eco47I	GGWCC	3 cut(s)	126, 1220, 2055
Eco53kI	GAGCTC	2 cut(s)	133, 1142
Eco57I	CTGAAG	6 cut(s)	747, 856, 1005, 1365, 1496, 2148
Eco81I	CCTNAGG	1 cut(s)	302
Eco88I	CYCGRG	2 cut(s)	829, 957
EcoICRI	GAGCTC	2 cut(s)	133, 1142
EcoNI	CCTNNNNNAGG	1 cut(s)	426
EcoO109I	RGGNCCY	1 cut(s)	306
EcoRII	CCWGG	3 cut(s)	1120, 1197, 1890
EcoRV	GATATC	1 cut(s)	1267
EcoT14I	CCWWGG	3 cut(s)	6, 40, 261
EcoT38I	GRGCYC	4 cut(s)	135, 866, 964, 1144
EgeI	GGCGCC	1 cut(s)	1119
EheI	GGCGCC	1 cut(s)	1119
ErhI	CCWWGG	3 cut(s)	6, 40, 261
FalI	AAGNNNNNCTT	2 cut(s)	2190, 2222
FaqI	GGGAC	4 cut(s)	83, 167, 1474, 2041
FauI	CCCGC	2 cut(s)	168, 209
FbaI	TGATCA	1 cut(s)	1726
FblI	GTMKAC	1 cut(s)	1908
Fnu4HI	GCNGC	9 cut(s)	17, 190, 193, 196, 289, 347, 1023, 1788, 1968
FriOI	GRGCYC	4 cut(s)	135, 866, 964, 1144
Fsp4HI	GCNGC	9 cut(s)	17, 190, 193, 196, 289, 347, 1023, 1788, 1968
FspBI	CTAG	6 cut(s)	20, 41, 585, 804, 1031, 1500
GlaI	GCGC	3 cut(s)	299, 323, 1119
GluI	GCNGC	9 cut(s)	17, 190, 193, 196, 289, 347, 1023, 1788, 1968
GsuI	CTGGAG	2 cut(s)	492, 2105
HaeII	RGCGCY	1 cut(s)	1121
HaeIII	GGCC	5 cut(s)	5, 307, 420, 915, 1890
HapII	CCGG	7 cut(s)	120, 186, 228, 410, 538, 830, 2240
HgaI	GACGC	3 cut(s)	110, 233, 313
HhaI	GCGC	3 cut(s)	300, 324, 1120
Hin1I	GRCGYC	3 cut(s)	102, 225, 1118
Hin6I	GCGC	3 cut(s)	298, 322, 1118
HinP1I	GCGC	3 cut(s)	298, 322, 1118
HincII	GTYRAC	2 cut(s)	379, 1569
HindII	GTYRAC	2 cut(s)	379, 1569
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	9 cut(s)	503, 733, 955, 1440, 1465, 1756, 1931, 1940, 1985
HpaII	CCGG	7 cut(s)	120, 186, 228, 410, 538, 830, 2240
HphI	GGTGA	7 cut(s)	73, 226, 235, 1274, 1406, 1460, 2185
Hpy166II	GTNNAC	8 cut(s)	379, 707, 1195, 1569, 1616, 1741, 1909, 1981
Hpy8I	GTNNAC	8 cut(s)	379, 707, 1195, 1569, 1616, 1741, 1909, 1981
Hpy99I	CGWCG	2 cut(s)	227, 1308
HpyCH4III	ACNGT	6 cut(s)	582, 932, 1591, 2002, 2055, 2077
HpyCH4IV	ACGT	1 cut(s)	1239
HpyF10VI	GCNNNNNNNGC	9 cut(s)	25, 195, 201, 288, 297, 304, 313, 368, 1651
HpyF3I	CTNAG	7 cut(s)	302, 423, 639, 819, 900, 951, 2019
HpySE526I	ACGT	1 cut(s)	1239
Hsp92I	GRCGYC	3 cut(s)	102, 225, 1118
HspAI	GCGC	3 cut(s)	298, 322, 1118
KasI	GGCGCC	1 cut(s)	1117
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	1726
Kzo9I	GATC	6 cut(s)	433, 651, 1173, 1367, 1675, 1726
LguI	GCTCTTC	1 cut(s)	1356
Lsp1109I	GCAGC	7 cut(s)	28, 176, 207, 358, 1034, 1774, 1979
LweI	GCATC	7 cut(s)	358, 385, 886, 1039, 1999, 2079, 2254
MabI	ACCWGGT	1 cut(s)	1197
MaeI	CTAG	6 cut(s)	20, 41, 585, 804, 1031, 1500
MaeII	ACGT	1 cut(s)	1239
MaeIII	GTNAC	3 cut(s)	1201, 1466, 1829
MalI	GATC	6 cut(s)	435, 653, 1175, 1369, 1677, 1728
MboI	GATC	6 cut(s)	433, 651, 1173, 1367, 1675, 1726
MfeI	CAATTG	1 cut(s)	1112
MflI	RGATCY	1 cut(s)	1675
MhlI	GDGCHC	8 cut(s)	135, 216, 866, 964, 1144, 1197, 1743, 2238
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	1118
MlyI	GAGTC	5 cut(s)	512, 949, 1474, 1934, 1994
MmeI	TCCRAC	1 cut(s)	1653
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	227
MroXI	GAANNNNTTC	1 cut(s)	1350
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	7 cut(s)	401, 791, 815, 1107, 1532, 2067, 2225
MslI	CAYNNNNRTG	2 cut(s)	332, 1062
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	1474, 1970
MspI	CCGG	7 cut(s)	120, 186, 228, 410, 538, 830, 2240
MspR9I	CCNGG	8 cut(s)	121, 186, 830, 831, 1122, 1199, 1892, 2240
MunI	CAATTG	1 cut(s)	1112
Mva1269I	GAATGC	1 cut(s)	1275
MvaI	CCWGG	3 cut(s)	1122, 1199, 1892
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	9 cut(s)	25, 195, 201, 288, 297, 304, 313, 368, 1651
NaeI	GCCGGC	1 cut(s)	229
NarI	GGCGCC	1 cut(s)	1118
NciI	CCSGG	5 cut(s)	121, 186, 830, 831, 2240
NdeII	GATC	6 cut(s)	433, 651, 1173, 1367, 1675, 1726
NgoMIV	GCCGGC	1 cut(s)	227
NheI	GCTAGC	1 cut(s)	19
NlaIV	GGNNCC	8 cut(s)	94, 308, 408, 865, 916, 1119, 1677, 2057
NmuCI	GTSAC	3 cut(s)	1201, 1466, 1829
NspI	RCATGY	1 cut(s)	512
NspV	TTCGAA	1 cut(s)	1901
PagI	TCATGA	2 cut(s)	964, 1155
PaqCI	CACCTGC	1 cut(s)	1726
PciSI	GCTCTTC	1 cut(s)	1356
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 832
PctI	GAATGC	1 cut(s)	1275
PdiI	GCCGGC	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	1350
PfeI	GAWTC	4 cut(s)	733, 1440, 1756, 1931
PflFI	GACNNNGTC	1 cut(s)	1913
PkrI	GCNGC	9 cut(s)	18, 191, 194, 197, 290, 348, 1024, 1789, 1969
PleI	GAGTC	5 cut(s)	511, 949, 1473, 1934, 1993
PluTI	GGCGCC	1 cut(s)	1121
PpsI	GAGTC	5 cut(s)	511, 949, 1473, 1934, 1993
PshBI	ATTAAT	1 cut(s)	1532
PsiI	TTATAA	1 cut(s)	2039
Psp124BI	GAGCTC	2 cut(s)	135, 1144
Psp6I	CCWGG	3 cut(s)	1120, 1197, 1890
PspGI	CCWGG	3 cut(s)	1120, 1197, 1890
PspN4I	GGNNCC	8 cut(s)	94, 308, 408, 865, 916, 1119, 1677, 2057
PspPI	GGNCC	6 cut(s)	126, 306, 419, 914, 1220, 2055
PstI	CTGCAG	1 cut(s)	1969
PsuI	RGATCY	1 cut(s)	1675
PsyI	GACNNNGTC	1 cut(s)	1913
PvuII	CAGCTG	2 cut(s)	1474, 1970
RsaI	GTAC	2 cut(s)	116, 1779
RsaNI	GTAC	2 cut(s)	115, 1778
RseI	CAYNNNNRTG	2 cut(s)	332, 1062
SacI	GAGCTC	2 cut(s)	135, 1144
SapI	GCTCTTC	1 cut(s)	1356
SaqAI	TTAA	7 cut(s)	401, 791, 815, 1107, 1532, 2067, 2225
SatI	GCNGC	9 cut(s)	17, 190, 193, 196, 289, 347, 1023, 1788, 1968
Sau3AI	GATC	6 cut(s)	433, 651, 1173, 1367, 1675, 1726
Sau96I	GGNCC	6 cut(s)	126, 306, 419, 914, 1220, 2055
SchI	GAGTC	5 cut(s)	512, 949, 1474, 1934, 1994
ScrFI	CCNGG	8 cut(s)	121, 186, 830, 831, 1122, 1199, 1892, 2240
SduI	GDGCHC	8 cut(s)	135, 216, 866, 964, 1144, 1197, 1743, 2238
SexAI	ACCWGGT	1 cut(s)	1197
SfaNI	GCATC	7 cut(s)	358, 385, 886, 1039, 1999, 2079, 2254
SfcI	CTRYAG	2 cut(s)	885, 1965
SfoI	GGCGCC	1 cut(s)	1119
SfuI	TTCGAA	1 cut(s)	1901
SinI	GGWCC	3 cut(s)	126, 1220, 2055
SmaI	CCCGGG	1 cut(s)	831
SmiMI	CAYNNNNRTG	2 cut(s)	332, 1062
SmlI	CTYRAG	3 cut(s)	350, 1942, 2213
SmoI	CTYRAG	3 cut(s)	350, 1942, 2213
SspDI	GGCGCC	1 cut(s)	1117
SspI	AATATT	1 cut(s)	440
SspMI	CTAG	6 cut(s)	20, 41, 585, 804, 1031, 1500
SstI	GAGCTC	2 cut(s)	135, 1144
StyD4I	CCNGG	8 cut(s)	119, 184, 828, 829, 1120, 1197, 1890, 2238
StyI	CCWWGG	3 cut(s)	6, 40, 261
TaaI	ACNGT	6 cut(s)	582, 932, 1591, 2002, 2055, 2077
TaiI	ACGT	1 cut(s)	1242
TaqI	TCGA	6 cut(s)	108, 252, 1370, 1719, 1813, 1901
TatI	WGTACW	1 cut(s)	1777
TauI	GCSGC	2 cut(s)	195, 291
TfiI	GAWTC	4 cut(s)	733, 1440, 1756, 1931
Tru1I	TTAA	7 cut(s)	401, 791, 815, 1107, 1532, 2067, 2225
Tru9I	TTAA	7 cut(s)	401, 791, 815, 1107, 1532, 2067, 2225
TscAI	CASTG	3 cut(s)	935, 1838, 2080
TseFI	GTSAC	3 cut(s)	1201, 1466, 1829
TseI	GCWGC	7 cut(s)	16, 189, 195, 346, 1022, 1787, 1967
Tsp45I	GTSAC	3 cut(s)	1201, 1466, 1829
TspMI	CCCGGG	1 cut(s)	829
TspRI	CASTG	3 cut(s)	935, 1838, 2080
Tth111I	GACNNNGTC	1 cut(s)	1913
VneI	GTGCAC	2 cut(s)	1193, 1739
VpaK11BI	GGWCC	3 cut(s)	126, 1220, 2055
VspI	ATTAAT	1 cut(s)	1532
XagI	CCTNNNNNAGG	1 cut(s)	426
XapI	RAATTY	6 cut(s)	479, 738, 1146, 1411, 1896, 2041
XceI	RCATGY	1 cut(s)	512
XmaI	CCCGGG	1 cut(s)	829
XmaJI	CCTAGG	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	1908
XmnI	GAANNNNTTC	1 cut(s)	1350
XspI	CTAG	6 cut(s)	20, 41, 585, 804, 1031, 1500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.