Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008865.1

Orthogroup ID

OG0009972

Physical Location & Seq

Genomic Coordinates Reverse (-)

12975 .. 15066

Gene Structure 2092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008865.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgctttctcaggtcaaaacagttgttattggtcttggagcaggtttacttcctatgttccttcataaatgtatgccctttatgcacattgaggcggtggagttggatcccatagtcatcaaacttgcaaacgaatactttggtttcatcgaagatgatcacttgcaggtgcacattgctgatgggattcagtatctcagaaaagctgtacattttgctgcggaggatgaaaagtctgctgttcgaggaaatgaggatgatcactgcaattctgaccccccatcttctaatggaagccatttggcatttcatgtagaaggccagggaatttcgaaggtagacatagtcattattgatgtggattctgccgactcaagttctggaatgacctgccctgctgctgattttgtggacgagtcgtttcttcggactgtgaaggatgcccttactgagaagggtctatttattataaatttggtttcacggtcccaagacattaaagacactgttatttcaaggatgaaaatggtgtttagccatctcttctgccttcagcttgaagaagatgtcaatgaagttatttttgcccttccttcagcttcctgtatcaaggaggatggcttcgccaaagccactcttcaacttgagaaattgttaaaattggagaacccggagataagccaaagcattatagatgctactaagaagataagacatctgaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25 Spermine_synth

Protein Analysis

241

Amino Acids

26.67

Weight (kDa)

5.07

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31740 AT2G31740
fragaria_vesca	FvH4_4g13510
malus_domestica	MD01G1010300.v1.1 MD04G1013700.v1.1
prunus_persica	Prupe.1G159900_v2.0.a1 Prupe.1G159900_v2.0.a1 Prupe.1G159900_v2.0.a1
pyrus_communis	pycom04g01070
rosa_chinensis	RchiOBHm_Chr4g0414141
rosa_laevigata	RLG00000008167
rosa_multiflora	Rmu_sc0000808.1_g000057 Rmu_sc0008865.1_g000003
rosa_roxburghii	Rroxscaffold_5G00358100
rosa_rugosa	Rorug04G0126400 Rorug04G0126500
rosa_samantha	Rh4AG184600 Rh4BG184000 Rh4CG196300 Rh4DG179900
rosa_wichuraiana	Rw4G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AarI	CACCTGC	1 cut(s)	157
Acc36I	ACCTGC	3 cut(s)	32, 157, 398
AccI	GTMKAC	1 cut(s)	339
AciI	CCGC	2 cut(s)	95, 221
AclWI	GGATC	2 cut(s)	101, 114
AcsI	RAATTY	2 cut(s)	327, 472
AcuI	CTGAAG	2 cut(s)	536, 579
AfaI	GTAC	1 cut(s)	210
AgsI	TTSAA	3 cut(s)	516, 560, 641
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	3 cut(s)	206, 556, 599
AluI	AGCT	3 cut(s)	206, 556, 599
Alw21I	GWGCWC	1 cut(s)	174
Alw44I	GTGCAC	1 cut(s)	170
AlwI	GGATC	2 cut(s)	101, 114
AoxI	GGCC	1 cut(s)	319
ApaLI	GTGCAC	1 cut(s)	170
ApeKI	GCWGC	2 cut(s)	218, 398
ApoI	RAATTY	2 cut(s)	327, 472
AspS9I	GGNCC	1 cut(s)	486
AsuC2I	CCSGG	1 cut(s)	671
AsuII	TTCGAA	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	486
BaeGI	GKGCMC	1 cut(s)	174
BamHI	GGATCC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	205, 385
BccI	CCATC	4 cut(s)	176, 289, 546, 611
BciT130I	CCWGG	1 cut(s)	323
BclI	TGATCA	2 cut(s)	157, 259
BcnI	CCSGG	1 cut(s)	671
BfuAI	ACCTGC	3 cut(s)	32, 157, 398
BisI	GCNGC	2 cut(s)	219, 399
BlsI	GCNGC	2 cut(s)	220, 400
Bme1390I	CCNGG	2 cut(s)	323, 671
Bme18I	GGWCC	1 cut(s)	486
BmgT120I	GGNCC	1 cut(s)	486
BmiI	GGNNCC	2 cut(s)	108, 488
BmrFI	CCNGG	2 cut(s)	323, 671
BmsI	GCATC	2 cut(s)	430, 685
Bpu14I	TTCGAA	1 cut(s)	332
BpuEI	CTTGAG	2 cut(s)	358, 665
BpuMI	CCSGG	1 cut(s)	671
BsaJI	CCNNGG	1 cut(s)	322
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	5 cut(s)	232, 262, 445, 525, 622
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	3 cut(s)	23, 211, 441
BseSI	GKGCMC	1 cut(s)	174
BseXI	GCAGC	2 cut(s)	205, 385
BshFI	GGCC	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	671
BslFI	GGGAC	1 cut(s)	472
BsmFI	GGGAC	1 cut(s)	472
BsnI	GGCC	1 cut(s)	321
Bsp119I	TTCGAA	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp1407I	TGTACA	1 cut(s)	208
Bsp143I	GATC	3 cut(s)	106, 157, 259
BspACI	CCGC	2 cut(s)	95, 221
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	3 cut(s)	22, 210, 442
BspLI	GGNNCC	2 cut(s)	108, 488
BspMI	ACCTGC	3 cut(s)	32, 157, 398
BspPI	GGATC	2 cut(s)	101, 114
BspT104I	TTCGAA	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	174
BsrGI	TGTACA	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	3 cut(s)	106, 157, 259
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	4 cut(s)	22, 433, 486, 508
Bst6I	CTCTTC	2 cut(s)	548, 642
BstAUI	TGTACA	1 cut(s)	208
BstBI	TTCGAA	1 cut(s)	332
BstDEI	CTNAG	4 cut(s)	9, 197, 450, 702
BstF5I	GGATG	5 cut(s)	232, 262, 445, 525, 622
BstKTI	GATC	3 cut(s)	109, 160, 262
BstMBI	GATC	3 cut(s)	106, 157, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	321, 669
BstSLI	GKGCMC	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	205, 385
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	321
BtsCI	GGATG	5 cut(s)	232, 262, 445, 525, 622
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	262, 504
BveI	ACCTGC	3 cut(s)	32, 157, 398
Cfr13I	GGNCC	1 cut(s)	486
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	1 cut(s)	311
CviJI	RGCY	9 cut(s)	206, 297, 321, 537, 556, 599, 621, 632, 681
CviKI_1	RGCY	9 cut(s)	206, 297, 321, 537, 556, 599, 621, 632, 681
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	4 cut(s)	9, 197, 450, 702
DpnI	GATC	3 cut(s)	108, 159, 261
DpnII	GATC	3 cut(s)	106, 157, 259
Eam1104I	CTCTTC	2 cut(s)	548, 642
EarI	CTCTTC	2 cut(s)	548, 642
Eco47I	GGWCC	1 cut(s)	486
Eco57I	CTGAAG	2 cut(s)	536, 579
EcoRII	CCWGG	1 cut(s)	321
FaeI	CATG	1 cut(s)	314
FaiI	YATR	9 cut(s)	56, 66, 74, 83, 113, 312, 344, 470, 692
FalI	AAGNNNNNCTT	2 cut(s)	621, 653
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	1 cut(s)	310
FbaI	TGATCA	2 cut(s)	157, 259
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	219, 399
FokI	GGATG	5 cut(s)	239, 269, 452, 532, 629
Fsp4HI	GCNGC	2 cut(s)	219, 399
GluI	GCNGC	2 cut(s)	219, 399
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	1 cut(s)	671
Hin1II	CATG	1 cut(s)	314
HinfI	GANTC	4 cut(s)	187, 362, 371, 416
HpaII	CCGG	1 cut(s)	671
Hpy166II	GTNNAC	4 cut(s)	47, 172, 340, 412
Hpy188I	TCNGA	4 cut(s)	200, 274, 429, 720
Hpy188III	TCNNGA	1 cut(s)	381
Hpy8I	GTNNAC	4 cut(s)	47, 172, 340, 412
HpyAV	CCTTC	8 cut(s)	71, 311, 328, 430, 448, 560, 599, 603
HpyCH4III	ACNGT	4 cut(s)	22, 433, 486, 508
HpyCH4V	TGCA	5 cut(s)	85, 128, 166, 172, 267
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	4 cut(s)	9, 197, 450, 702
Hsp92II	CATG	1 cut(s)	314
Ksp22I	TGATCA	2 cut(s)	157, 259
Kzo9I	GATC	3 cut(s)	106, 157, 259
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	9 cut(s)	27, 152, 308, 335, 366, 403, 408, 616, 684
Lsp1109I	GCAGC	2 cut(s)	205, 385
LweI	GCATC	2 cut(s)	430, 685
MalI	GATC	3 cut(s)	108, 159, 261
MboI	GATC	3 cut(s)	106, 157, 259
MboII	GAAGA	8 cut(s)	164, 276, 416, 535, 572, 575, 629, 718
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	5 cut(s)	268, 327, 472, 650, 659
MlyI	GAGTC	2 cut(s)	365, 425
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	5 cut(s)	85, 217, 239, 247, 607
MseI	TTAA	2 cut(s)	498, 656
MspI	CCGG	1 cut(s)	671
MspR9I	CCNGG	2 cut(s)	323, 671
MvaI	CCWGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	82
NciI	CCSGG	1 cut(s)	671
NdeII	GATC	3 cut(s)	106, 157, 259
NlaIII	CATG	1 cut(s)	314
NlaIV	GGNNCC	2 cut(s)	108, 488
NspV	TTCGAA	1 cut(s)	332
PaqCI	CACCTGC	1 cut(s)	157
PfeI	GAWTC	2 cut(s)	187, 362
PflFI	GACNNNGTC	1 cut(s)	344
PkrI	GCNGC	2 cut(s)	220, 400
PleI	GAGTC	2 cut(s)	365, 424
PpsI	GAGTC	2 cut(s)	365, 424
PsiI	TTATAA	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	108, 488
PspPI	GGNCC	1 cut(s)	486
PsuI	RGATCY	1 cut(s)	106
PsyI	GACNNNGTC	1 cut(s)	344
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SaqAI	TTAA	2 cut(s)	498, 656
SatI	GCNGC	2 cut(s)	219, 399
Sau3AI	GATC	3 cut(s)	106, 157, 259
Sau96I	GGNCC	1 cut(s)	486
SchI	GAGTC	2 cut(s)	365, 425
ScrFI	CCNGG	2 cut(s)	323, 671
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	8 cut(s)	15, 46, 171, 208, 339, 392, 558, 601
SfaNI	GCATC	2 cut(s)	430, 685
SfuI	TTCGAA	1 cut(s)	332
SinI	GGWCC	1 cut(s)	486
SmlI	CTYRAG	2 cut(s)	373, 644
SmoI	CTYRAG	2 cut(s)	373, 644
Sse9I	AATT	5 cut(s)	268, 327, 472, 650, 659
SsiI	CCGC	2 cut(s)	95, 221
StyD4I	CCNGG	2 cut(s)	321, 669
TaaI	ACNGT	4 cut(s)	22, 433, 486, 508
TaqI	TCGA	3 cut(s)	150, 244, 332
TasI	AATT	5 cut(s)	268, 327, 472, 650, 659
TatI	WGTACW	1 cut(s)	208
TfiI	GAWTC	2 cut(s)	187, 362
Tru1I	TTAA	2 cut(s)	498, 656
Tru9I	TTAA	2 cut(s)	498, 656
TscAI	CASTG	2 cut(s)	269, 511
TseI	GCWGC	2 cut(s)	218, 398
TspDTI	ATGAA	6 cut(s)	53, 136, 243, 299, 536, 588
TspRI	CASTG	2 cut(s)	269, 511
Tth111I	GACNNNGTC	1 cut(s)	344
VneI	GTGCAC	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	486
XapI	RAATTY	2 cut(s)	327, 472
XmiI	GTMKAC	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.