Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009972

Physical Location & Seq

Genomic Coordinates Forward (+)

20096190 .. 20097535

Gene Structure 1346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0126500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGCACTTGATAAACATTGAAAATGTGAGTGCCATTATCGGACCTCAAAGTTCAGCAGAAGCGAAGTTTGTGATAGAGCTGGGAAGAAGGAATCATGTTCCGATTATTTCGTTTTCTGCCACTAGTCCATCTCTTTCTCCATCCCATAGCTCATATTTCGTTCGGACGGCTTTTAGTGACTCTGCTCAAGTAGAAGCCATAGCTGCAATCGTCGGAGCTTATAGTAAGTGGTTGGAAGTTGTTCTCATCTATGAAGACACGGAGTATGGAAATAGCTTAATTCCATATTTGGAAGACGCTGTCCAGAAAGTTGGAGCTCGAGTACCTCATAGAAGTGTCATTCCTCCTCATTATAATGACAGAGAAATTTTGAAGGAGCTTAACCACTTGAAATCAACTCGAGCAAGAATATTTTTGGTCCATATGACTGCCTCCCTGGGGTCCAAATTGTTTTTATCAGCAAGTAAGGCAGGGATGATGACCGAAGGGTATGGATGGATTGTTACGGAAGGGTTATCGACTTTATTAGATCCTGTGGGTTCAAGAACCATGGACTCAATGCAAGGTGTAGTGGGAGTAAGGCCATATATACCAATGTCAAAAGAACTTGAAGACTTCGTGCTGCGAATGAAAAGATTCAGGTTCAGAAAATCAAGCAAGATTACTGGTGTAAACCTCTTTGGGTTGTGGGCATATGATACAGTTTGGGCATTAGCAATGACAGTGGAGAAGGTTGGAACAGCAAGCAGAGTTGATCTTGCAAGTTTGGGAACTGGTGACAGGGGTCAAAACCTTCTTGACGCTATCCTAGATTCAGAATTTGAAGGCCTCAGTGGGAATTTCCGGTTGGTTAAGGGACAGTTGGAAGCTTCAACCTTTGAGGTATTTAATGTGATTGGCGGAAAAGAAAGAATAATTGGATATTGGAACCAGAAGAAAGGACTTTCCCGAAAGCTGAATGGAGCAGCAGAGTTGGATAAAAGGAAGACACTCGAGAAACCAATCTGGCCAGGGTACACTACAGACATCCCTCCAACAAAGAAATTGAGGATTGGAGTTCCCTTGAAAAAGGGTTTTTATGAATTCCTAAAATTCGAACACAACAATATATCAGGATTCTCTGCTGAGATATTCTTTGCTGCAGAAAAGAAACTGCCATTTTCCCTTTCATATGAGTTTTCTGCCTTCGAGGGGACTTATGATGATCTTCTTTATCAAATTCATCTTCAGGCAAGTTTTAATTACAAACTATCGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25 Spermine_synth

Protein Analysis

419

Amino Acids

46.78

Weight (kDa)

9.0

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	3 - 254	6.5e-18	Periplasmic binding protein
ANF_receptor	PF01094	7 - 300	4.9e-70	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31740 AT2G31740
fragaria_vesca	FvH4_4g13510
malus_domestica	MD01G1010300.v1.1 MD04G1013700.v1.1
prunus_persica	Prupe.1G159900_v2.0.a1 Prupe.1G159900_v2.0.a1 Prupe.1G159900_v2.0.a1
pyrus_communis	pycom04g01070
rosa_chinensis	RchiOBHm_Chr4g0414141
rosa_laevigata	RLG00000008167
rosa_multiflora	Rmu_sc0000808.1_g000057 Rmu_sc0008865.1_g000003
rosa_roxburghii	Rroxscaffold_5G00358100
rosa_rugosa	Rorug04G0126400 Rorug04G0126500
rosa_samantha	Rh4AG184600 Rh4BG184000 Rh4CG196300 Rh4DG179900
rosa_wichuraiana	Rw4G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	354
AciI	CCGC	1 cut(s)	900
AclWI	GGATC	1 cut(s)	524
AcoI	YGGCCR	1 cut(s)	1007
AcsI	RAATTY	6 cut(s)	366, 818, 838, 1082, 1091, 1218
AcuI	CTGAAG	1 cut(s)	1211
AfaI	GTAC	2 cut(s)	324, 1016
AfiI	CCNNNNNNNGG	2 cut(s)	438, 1191
AgsI	TTSAA	8 cut(s)	20, 373, 391, 543, 611, 824, 873, 1066
AhlI	ACTAGT	1 cut(s)	122
AjnI	CCWGG	2 cut(s)	435, 1009
AjuI	GAANNNNNNNTTGG	4 cut(s)	830, 862, 900, 932
AluBI	AGCT	9 cut(s)	79, 150, 203, 218, 276, 317, 379, 869, 955
AluI	AGCT	9 cut(s)	79, 150, 203, 218, 276, 317, 379, 869, 955
Alw21I	GWGCWC	1 cut(s)	319
AlwI	GGATC	1 cut(s)	524
Ama87I	CYCGRG	3 cut(s)	318, 399, 992
AoxI	GGCC	3 cut(s)	581, 826, 1007
ApeKI	GCWGC	4 cut(s)	203, 622, 965, 1139
ApoI	RAATTY	6 cut(s)	366, 818, 838, 1082, 1091, 1218
Asp700I	GAANNNNTTC	2 cut(s)	240, 635
AspS9I	GGNCC	3 cut(s)	41, 418, 441
AsuHPI	GGTGA	1 cut(s)	788
AsuII	TTCGAA	1 cut(s)	1095
AvaI	CYCGRG	3 cut(s)	318, 399, 992
AvaII	GGWCC	3 cut(s)	41, 418, 441
BalI	TGGCCA	1 cut(s)	1009
BanII	GRGCYC	1 cut(s)	319
BbsI	GAAGAC	4 cut(s)	261, 300, 618, 992
Bbv12I	GWGCWC	1 cut(s)	319
BbvI	GCAGC	4 cut(s)	190, 609, 977, 1126
BccI	CCATC	3 cut(s)	136, 148, 489
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	2 cut(s)	437, 1011
BcuI	ACTAGT	1 cut(s)	122
BfaI	CTAG	2 cut(s)	123, 809
BfmI	CTRYAG	2 cut(s)	1020, 1140
BisI	GCNGC	4 cut(s)	204, 623, 966, 1140
BlsI	GCNGC	4 cut(s)	205, 624, 967, 1141
Bme1390I	CCNGG	2 cut(s)	437, 1011
Bme18I	GGWCC	3 cut(s)	41, 418, 441
BmeT110I	CYCGRG	3 cut(s)	318, 399, 992
BmgT120I	GGNCC	3 cut(s)	41, 418, 441
BmiI	GGNNCC	2 cut(s)	442, 929
BmrFI	CCNGG	2 cut(s)	437, 1011
BoxI	GACNNNNGTC	1 cut(s)	783
BpiI	GAAGAC	4 cut(s)	261, 300, 618, 992
Bpu14I	TTCGAA	1 cut(s)	1095
BpuEI	CTTGAG	1 cut(s)	171
BsaJI	CCNNGG	4 cut(s)	435, 436, 549, 1010
BsaWI	WCCGGW	1 cut(s)	843
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	2 cut(s)	438, 1191
Bse1I	ACTGG	2 cut(s)	670, 778
Bse3DI	GCAATG	1 cut(s)	723
BseBI	CCWGG	2 cut(s)	437, 1011
BseDI	CCNNGG	4 cut(s)	435, 436, 549, 1010
BseGI	GGATG	4 cut(s)	140, 480, 500, 1026
BseLI	CCNNNNNNNGG	2 cut(s)	438, 1191
BseMI	GCAATG	1 cut(s)	723
BseMII	CTCAG	2 cut(s)	844, 1116
BseNI	ACTGG	2 cut(s)	670, 778
BseRI	GAGGAG	1 cut(s)	336
BseXI	GCAGC	4 cut(s)	190, 609, 977, 1126
BseYI	CCCAGC	1 cut(s)	79
BshFI	GGCC	3 cut(s)	583, 828, 1009
BsiHKAI	GWGCWC	1 cut(s)	319
BsiHKCI	CYCGRG	3 cut(s)	318, 399, 992
BsiSI	CCGG	1 cut(s)	844
BslFI	GGGAC	2 cut(s)	870, 1207
BslI	CCNNNNNNNGG	2 cut(s)	438, 1191
BsmFI	GGGAC	2 cut(s)	870, 1207
BsnI	GGCC	3 cut(s)	583, 828, 1009
BsoBI	CYCGRG	3 cut(s)	318, 399, 992
Bsp119I	TTCGAA	1 cut(s)	1095
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	3 cut(s)	529, 754, 1204
Bsp19I	CCATGG	1 cut(s)	549
BspACI	CCGC	1 cut(s)	900
BspANI	GGCC	3 cut(s)	583, 828, 1009
BspCNI	CTCAG	2 cut(s)	843, 1117
BspLI	GGNNCC	2 cut(s)	442, 929
BspMAI	CTGCAG	1 cut(s)	1144
BspPI	GGATC	1 cut(s)	524
BspT104I	TTCGAA	1 cut(s)	1095
BsrDI	GCAATG	1 cut(s)	723
BsrI	ACTGG	2 cut(s)	670, 778
BssECI	CCNNGG	4 cut(s)	435, 436, 549, 1010
BssMI	GATC	3 cut(s)	529, 754, 1204
BssT1I	CCWWGG	1 cut(s)	549
Bst2UI	CCWGG	2 cut(s)	437, 1011
Bst4CI	ACNGT	3 cut(s)	703, 724, 861
BstBI	TTCGAA	1 cut(s)	1095
BstC8I	GCNNGC	1 cut(s)	745
BstDEI	CTNAG	2 cut(s)	830, 1125
BstDSI	CCRYGG	1 cut(s)	549
BstF5I	GGATG	4 cut(s)	140, 480, 500, 1026
BstKTI	GATC	3 cut(s)	532, 757, 1207
BstMBI	GATC	3 cut(s)	529, 754, 1204
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 467
BstNI	CCWGG	2 cut(s)	437, 1011
BstPAI	GACNNNNGTC	1 cut(s)	783
BstSCI	CCNGG	2 cut(s)	435, 1009
BstSFI	CTRYAG	2 cut(s)	1020, 1140
BstV1I	GCAGC	4 cut(s)	190, 609, 977, 1126
BstV2I	GAAGAC	4 cut(s)	261, 300, 618, 992
BstX2I	RGATCY	1 cut(s)	529
BstXI	CCANNNNNNTGG	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	529
BsuRI	GGCC	3 cut(s)	583, 828, 1009
BtgI	CCRYGG	1 cut(s)	549
BtsCI	GGATG	4 cut(s)	140, 480, 500, 1026
BtsIMutI	CAGTG	2 cut(s)	729, 838
Cac8I	GCNNGC	1 cut(s)	745
Cfr13I	GGNCC	3 cut(s)	41, 418, 441
CseI	GACGC	2 cut(s)	305, 809
Csp6I	GTAC	2 cut(s)	323, 1015
CspCI	CAANNNNNGTGG	2 cut(s)	705, 740
CviAII	CATG	2 cut(s)	95, 550
CviQI	GTAC	2 cut(s)	323, 1015
DdeI	CTNAG	2 cut(s)	830, 1125
DpnI	GATC	3 cut(s)	531, 756, 1206
DpnII	GATC	3 cut(s)	529, 754, 1204
EaeI	YGGCCR	1 cut(s)	1007
EciI	GGCGGA	1 cut(s)	915
Ecl136II	GAGCTC	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	549
Eco147I	AGGCCT	1 cut(s)	828
Eco24I	GRGCYC	1 cut(s)	319
Eco47I	GGWCC	3 cut(s)	41, 418, 441
Eco53kI	GAGCTC	1 cut(s)	317
Eco57I	CTGAAG	1 cut(s)	1211
Eco88I	CYCGRG	3 cut(s)	318, 399, 992
EcoICRI	GAGCTC	1 cut(s)	317
EcoRI	GAATTC	1 cut(s)	1082
EcoRII	CCWGG	2 cut(s)	435, 1009
EcoT14I	CCWWGG	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	2 cut(s)	98, 553
FaqI	GGGAC	2 cut(s)	870, 1207
FatI	CATG	2 cut(s)	94, 549
FauNDI	CATATG	3 cut(s)	423, 694, 1171
Fnu4HI	GCNGC	4 cut(s)	204, 623, 966, 1140
FokI	GGATG	4 cut(s)	127, 487, 507, 1013
FriOI	GRGCYC	1 cut(s)	319
Fsp4HI	GCNGC	4 cut(s)	204, 623, 966, 1140
FspBI	CTAG	2 cut(s)	123, 809
GluI	GCNGC	4 cut(s)	204, 623, 966, 1140
GsaI	CCCAGC	1 cut(s)	83
HaeIII	GGCC	3 cut(s)	583, 828, 1009
HapII	CCGG	1 cut(s)	844
HgaI	GACGC	2 cut(s)	305, 809
Hin1II	CATG	2 cut(s)	98, 553
HindIII	AAGCTT	1 cut(s)	867
HinfI	GANTC	6 cut(s)	91, 179, 554, 636, 812, 1116
HpaII	CCGG	1 cut(s)	844
HphI	GGTGA	1 cut(s)	788
Hpy166II	GTNNAC	2 cut(s)	673, 1017
Hpy188I	TCNGA	6 cut(s)	41, 102, 165, 215, 647, 817
Hpy188III	TCNNGA	6 cut(s)	304, 543, 797, 948, 994, 1113
Hpy8I	GTNNAC	2 cut(s)	673, 1017
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	8 cut(s)	81, 367, 479, 503, 724, 803, 818, 1195
HpyCH4III	ACNGT	3 cut(s)	703, 724, 861
HpyCH4V	TGCA	5 cut(s)	4, 206, 562, 761, 1142
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 467
HpyF3I	CTNAG	2 cut(s)	830, 1125
Hsp92II	CATG	2 cut(s)	98, 553
Kzo9I	GATC	3 cut(s)	529, 754, 1204
LmnI	GCTCC	4 cut(s)	215, 314, 376, 962
Lsp1109I	GCAGC	4 cut(s)	190, 609, 977, 1126
MaeI	CTAG	2 cut(s)	123, 809
MaeIII	GTNAC	3 cut(s)	176, 502, 776
MalI	GATC	3 cut(s)	531, 756, 1206
MboI	GATC	3 cut(s)	529, 754, 1204
MboII	GAAGA	8 cut(s)	96, 266, 305, 623, 946, 997, 1199, 1217
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	1 cut(s)	319
MlsI	TGGCCA	1 cut(s)	1009
MluNI	TGGCCA	1 cut(s)	1009
MlyI	GAGTC	2 cut(s)	173, 548
MmeI	TCCRAC	7 cut(s)	193, 213, 292, 715, 843, 954, 1058
Mox20I	TGGCCA	1 cut(s)	1009
MroXI	GAANNNNTTC	2 cut(s)	240, 635
MscI	TGGCCA	1 cut(s)	1009
MseI	TTAA	6 cut(s)	278, 381, 852, 888, 1239, 1258
MslI	CAYNNNNRTG	2 cut(s)	333, 354
Msp20I	TGGCCA	1 cut(s)	1009
MspI	CCGG	1 cut(s)	844
MspR9I	CCNGG	2 cut(s)	437, 1011
MvaI	CCWGG	2 cut(s)	437, 1011
MwoI	GCNNNNNNNGC	2 cut(s)	203, 467
NcoI	CCATGG	1 cut(s)	549
NdeI	CATATG	3 cut(s)	423, 694, 1171
NdeII	GATC	3 cut(s)	529, 754, 1204
NlaIII	CATG	2 cut(s)	98, 553
NlaIV	GGNNCC	2 cut(s)	442, 929
NmuCI	GTSAC	2 cut(s)	176, 776
NspV	TTCGAA	1 cut(s)	1095
PaeR7I	CTCGAG	3 cut(s)	318, 399, 992
PasI	CCCWGGG	1 cut(s)	436
PceI	AGGCCT	1 cut(s)	828
PdmI	GAANNNNTTC	2 cut(s)	240, 635
PfeI	GAWTC	4 cut(s)	91, 636, 812, 1116
PflFI	GACNNNGTC	1 cut(s)	299
PkrI	GCNGC	4 cut(s)	205, 624, 967, 1141
PleI	GAGTC	2 cut(s)	173, 548
PpsI	GAGTC	2 cut(s)	173, 548
PshAI	GACNNNNGTC	1 cut(s)	783
PsiI	TTATAA	1 cut(s)	354
Psp124BI	GAGCTC	1 cut(s)	319
Psp6I	CCWGG	2 cut(s)	435, 1009
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	2 cut(s)	435, 1009
PspN4I	GGNNCC	2 cut(s)	442, 929
PspPI	GGNCC	3 cut(s)	41, 418, 441
PspXI	VCTCGAGB	2 cut(s)	318, 399
PstI	CTGCAG	1 cut(s)	1144
PsuI	RGATCY	1 cut(s)	529
PsyI	GACNNNGTC	1 cut(s)	299
RsaI	GTAC	2 cut(s)	324, 1016
RsaNI	GTAC	2 cut(s)	323, 1015
RseI	CAYNNNNRTG	2 cut(s)	333, 354
SacI	GAGCTC	1 cut(s)	319
SaqAI	TTAA	6 cut(s)	278, 381, 852, 888, 1239, 1258
SatI	GCNGC	4 cut(s)	204, 623, 966, 1140
Sau3AI	GATC	3 cut(s)	529, 754, 1204
Sau96I	GGNCC	3 cut(s)	41, 418, 441
SchI	GAGTC	2 cut(s)	173, 548
ScrFI	CCNGG	2 cut(s)	437, 1011
SduI	GDGCHC	1 cut(s)	319
SfcI	CTRYAG	2 cut(s)	1020, 1140
Sfr274I	CTCGAG	3 cut(s)	318, 399, 992
SfuI	TTCGAA	1 cut(s)	1095
SinI	GGWCC	3 cut(s)	41, 418, 441
SlaI	CTCGAG	3 cut(s)	318, 399, 992
SmiMI	CAYNNNNRTG	2 cut(s)	333, 354
SmlI	CTYRAG	4 cut(s)	186, 318, 399, 992
SmoI	CTYRAG	4 cut(s)	186, 318, 399, 992
SpeI	ACTAGT	1 cut(s)	122
SseBI	AGGCCT	1 cut(s)	828
SsiI	CCGC	1 cut(s)	900
SspI	AATATT	1 cut(s)	411
SspMI	CTAG	2 cut(s)	123, 809
SstI	GAGCTC	1 cut(s)	319
StuI	AGGCCT	1 cut(s)	828
StyD4I	CCNGG	2 cut(s)	435, 1009
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	3 cut(s)	703, 724, 861
TaqI	TCGA	7 cut(s)	319, 400, 518, 993, 1095, 1188, 1253
TaqII	GACCGA	1 cut(s)	497
TfiI	GAWTC	4 cut(s)	91, 636, 812, 1116
Tru1I	TTAA	6 cut(s)	278, 381, 852, 888, 1239, 1258
Tru9I	TTAA	6 cut(s)	278, 381, 852, 888, 1239, 1258
TscAI	CASTG	2 cut(s)	729, 838
TseFI	GTSAC	2 cut(s)	176, 776
TseI	GCWGC	4 cut(s)	203, 622, 965, 1139
Tsp45I	GTSAC	2 cut(s)	176, 776
TspDTI	ATGAA	5 cut(s)	267, 644, 1095, 1158, 1211
TspGWI	ACGGA	2 cut(s)	275, 521
TspRI	CASTG	2 cut(s)	729, 838
Tth111I	GACNNNGTC	1 cut(s)	299
VpaK11BI	GGWCC	3 cut(s)	41, 418, 441
XapI	RAATTY	6 cut(s)	366, 818, 838, 1082, 1091, 1218
XhoI	CTCGAG	3 cut(s)	318, 399, 992
XmnI	GAANNNNTTC	2 cut(s)	240, 635
XspI	CTAG	2 cut(s)	123, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.