Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017004

Physical Location & Seq

Genomic Coordinates Reverse (-)

46510140 .. 46513228

Gene Structure 3089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39049

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGACAGATATATCTGGCATACGTAAAATTCTTCCCGACTCTAAGGTAACTGCTATTGCCTTTGATCCATCTGGCTACAGTATGAATGCAGTGATACTAGTAAAAATCTCTTCGGATCTACATCGGAACTGCCCCAATACTGATGGGGAAGGAGGCGACGCCTTGATTCAAGAGGACGTGTCCGGGATGGGTTTTCTCCAGCGAGGATTGGCAGAGCAGTGGCTAGGGTCGAAGGCCAAGCAGGACTGGGTGCCCAGAGTGTTTTTGGGTGTCCAATGGGCCTGGGCTTGTTTGGGTTACTCAAGACGGGTCTTTGCTTGGGCCTTGTCTTCTGTTTGGATTCGTATCTGGGATCCTGGAGATTTTTTATGGATTCTTCTTTCTGCTACATTTTGGAATTGGAATTTCGGTTACTTAGGTAGAAGATTGCTCTCTACTCAACGTATTACTTTGCGTGGAGTGGGCAAGGTCGGTCACACTACCGCCGGTTACCTTGATAGAAGGTTACCCTCTATTCGACGCATATTTTTGCGTGGGAGTATGGTTGGCCATACAATTGGTACCGTTTTACATAGCCCGGACTCTGTCTGGTGCCTCATCAAATGCTTAATTGCATCCTTCATATCCTTGCTAGGTTTTATTTTCGATGCTTTGTTGCATCTAGTACTTCTCTTGTTATTTTATATTTTGATAATGCTTATTGTTGGTGTTATTGGCTTGGTCATCTTGGCTGCAGTGACCCTACTTGGTATTCTTGCAAGGGGCTCTTGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004014 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006595 GO:0006596 GO:0006597 GO:0006807 GO:0008150 GO:0008152 GO:0008215 GO:0008216 GO:0008295 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016829 GO:0016830 GO:0016831 GO:0017144 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko01100 map00270 map00330 map01100

Pfam Domains

Protein Families

AdoMetDC_leader SAM_decarbox

Protein Analysis

258

Amino Acids

28.67

Weight (kDa)

9.54

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017004)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0420781 RchiOBHm_Chr5g0012511 RchiOBHm_Chr5g0024641 RchiOBHm_Chr5g0046441
rosa_multiflora	Rmu_sc0010408.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008120 Rroxscaffold_1G00020230
rosa_samantha	Rh1BG386800 Rh2BG593700 Rh5AG166900 Rh5BG498600 Rh5CG164900 Rh6AG268500 Rh6BG104700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	560
AccB1I	GGYRCC	3 cut(s)	250, 560, 591
AciI	CCGC	1 cut(s)	483
AclWI	GGATC	4 cut(s)	59, 123, 347, 360
AcoI	YGGCCR	1 cut(s)	547
AcsI	RAATTY	2 cut(s)	27, 403
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	2 cut(s)	562, 666
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	1 cut(s)	170
AhlI	ACTAGT	1 cut(s)	97
AjiI	CACGTC	1 cut(s)	178
AjnI	CCWGG	2 cut(s)	281, 355
AlwI	GGATC	4 cut(s)	59, 123, 347, 360
AoxI	GGCC	4 cut(s)	234, 279, 321, 547
ApeKI	GCWGC	1 cut(s)	731
ApoI	RAATTY	2 cut(s)	27, 403
Asp718I	GGTACC	1 cut(s)	560
AspS9I	GGNCC	2 cut(s)	279, 321
AsuC2I	CCSGG	2 cut(s)	184, 578
BaeGI	GKGCMC	1 cut(s)	255
BalI	TGGCCA	1 cut(s)	549
BamHI	GGATCC	1 cut(s)	352
BanI	GGYRCC	3 cut(s)	250, 560, 591
BanII	GRGCYC	1 cut(s)	767
BbsI	GAAGAC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	718
BccI	CCATC	3 cut(s)	76, 137, 181
BciT130I	CCWGG	2 cut(s)	283, 357
BcnI	CCSGG	2 cut(s)	184, 578
BcuI	ACTAGT	1 cut(s)	97
BfaI	CTAG	4 cut(s)	98, 224, 632, 662
BfmI	CTRYAG	2 cut(s)	76, 732
BisI	GCNGC	1 cut(s)	732
BlsI	GCNGC	1 cut(s)	733
BmcAI	AGTACT	1 cut(s)	666
Bme1390I	CCNGG	4 cut(s)	184, 283, 357, 578
BmgBI	CACGTC	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	279, 321
BmiI	GGNNCC	4 cut(s)	252, 354, 562, 593
BmrFI	CCNGG	4 cut(s)	184, 283, 357, 578
BmrI	ACTGGG	1 cut(s)	256
BmsI	GCATC	3 cut(s)	623, 637, 667
BmuI	ACTGGG	1 cut(s)	256
BpiI	GAAGAC	1 cut(s)	321
BpmI	CTGGAG	2 cut(s)	182, 378
BpuEI	CTTGAG	1 cut(s)	286
BpuMI	CCSGG	2 cut(s)	184, 578
BsaAI	YACGTR	1 cut(s)	23
BsaBI	GATNNNNATC	2 cut(s)	120, 344
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	282
Bse118I	RCCGGY	1 cut(s)	485
Bse1I	ACTGG	1 cut(s)	251
Bse8I	GATNNNNATC	2 cut(s)	120, 344
BseBI	CCWGG	2 cut(s)	283, 357
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	2 cut(s)	192, 614
BseJI	GATNNNNATC	2 cut(s)	120, 344
BseNI	ACTGG	1 cut(s)	251
BseSI	GKGCMC	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	718
BshFI	GGCC	4 cut(s)	236, 281, 323, 549
BshNI	GGYRCC	3 cut(s)	250, 560, 591
BsiSI	CCGG	3 cut(s)	183, 486, 578
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	4 cut(s)	236, 281, 323, 549
Bsp1286I	GDGCHC	2 cut(s)	255, 767
Bsp143I	GATC	3 cut(s)	64, 115, 352
BspACI	CCGC	1 cut(s)	483
BspANI	GGCC	4 cut(s)	236, 281, 323, 549
BspLI	GGNNCC	4 cut(s)	252, 354, 562, 593
BspMAI	CTGCAG	1 cut(s)	736
BspPI	GGATC	4 cut(s)	59, 123, 347, 360
BspT107I	GGYRCC	3 cut(s)	250, 560, 591
BsrFI	RCCGGY	1 cut(s)	485
BsrI	ACTGG	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	485
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	3 cut(s)	64, 115, 352
BssNI	GRCGYC	1 cut(s)	159
Bst2UI	CCWGG	2 cut(s)	283, 357
Bst4CI	ACNGT	2 cut(s)	80, 565
Bst6I	CTCTTC	1 cut(s)	115
BstACI	GRCGYC	1 cut(s)	159
BstBAI	YACGTR	1 cut(s)	23
BstDEI	CTNAG	2 cut(s)	42, 415
BstEII	GGTNACC	2 cut(s)	488, 504
BstF5I	GGATG	2 cut(s)	192, 614
BstKTI	GATC	3 cut(s)	67, 118, 355
BstMBI	GATC	3 cut(s)	64, 115, 352
BstNI	CCWGG	2 cut(s)	283, 357
BstPI	GGTNACC	2 cut(s)	488, 504
BstSCI	CCNGG	4 cut(s)	182, 281, 355, 576
BstSFI	CTRYAG	2 cut(s)	76, 732
BstSLI	GKGCMC	1 cut(s)	255
BstSNI	TACGTA	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	718
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	2 cut(s)	115, 352
BstXI	CCANNNNNNTGG	1 cut(s)	557
BstYI	RGATCY	2 cut(s)	115, 352
BsuRI	GGCC	4 cut(s)	236, 281, 323, 549
BtrI	CACGTC	1 cut(s)	178
BtsCI	GGATG	2 cut(s)	192, 614
BtsI	GCAGTG	3 cut(s)	96, 224, 741
BtsIMutI	CAGTG	3 cut(s)	96, 224, 741
Cfr10I	RCCGGY	1 cut(s)	485
Cfr13I	GGNCC	2 cut(s)	279, 321
CseI	GACGC	2 cut(s)	167, 528
Csp6I	GTAC	2 cut(s)	561, 665
CviQI	GTAC	2 cut(s)	561, 665
DdeI	CTNAG	2 cut(s)	42, 415
DpnI	GATC	3 cut(s)	66, 117, 354
DpnII	GATC	3 cut(s)	64, 115, 352
EaeI	YGGCCR	1 cut(s)	547
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
Eco105I	TACGTA	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	767
Eco91I	GGTNACC	2 cut(s)	488, 504
EcoO65I	GGTNACC	2 cut(s)	488, 504
EcoRII	CCWGG	2 cut(s)	281, 355
EcoT38I	GRGCYC	1 cut(s)	767
FalI	AAGNNNNNCTT	1 cut(s)	751
Fnu4HI	GCNGC	1 cut(s)	732
FokI	GGATG	2 cut(s)	199, 601
FriOI	GRGCYC	1 cut(s)	767
Fsp4HI	GCNGC	1 cut(s)	732
FspBI	CTAG	4 cut(s)	98, 224, 632, 662
GluI	GCNGC	1 cut(s)	732
GsuI	CTGGAG	2 cut(s)	182, 378
HaeIII	GGCC	4 cut(s)	236, 281, 323, 549
HapII	CCGG	3 cut(s)	183, 486, 578
HgaI	GACGC	2 cut(s)	167, 528
Hin1I	GRCGYC	1 cut(s)	159
HinfI	GANTC	5 cut(s)	38, 166, 340, 373, 581
HpaII	CCGG	3 cut(s)	183, 486, 578
Hpy188I	TCNGA	2 cut(s)	115, 126
Hpy188III	TCNNGA	3 cut(s)	35, 170, 303
Hpy99I	CGWCG	2 cut(s)	161, 522
HpyAV	CCTTC	4 cut(s)	143, 226, 495, 628
HpyCH4III	ACNGT	2 cut(s)	80, 565
HpyCH4IV	ACGT	3 cut(s)	22, 177, 442
HpyCH4V	TGCA	5 cut(s)	89, 614, 658, 734, 758
HpyF3I	CTNAG	2 cut(s)	42, 415
HpySE526I	ACGT	3 cut(s)	22, 177, 442
Hsp92I	GRCGYC	1 cut(s)	159
KpnI	GGTACC	1 cut(s)	564
Kzo9I	GATC	3 cut(s)	64, 115, 352
Lsp1109I	GCAGC	1 cut(s)	718
LweI	GCATC	3 cut(s)	623, 637, 667
MaeI	CTAG	4 cut(s)	98, 224, 632, 662
MaeII	ACGT	3 cut(s)	22, 177, 442
MaeIII	GTNAC	7 cut(s)	46, 296, 410, 473, 488, 504, 736
MalI	GATC	3 cut(s)	66, 117, 354
MboI	GATC	3 cut(s)	64, 115, 352
MboII	GAAGA	5 cut(s)	23, 102, 321, 368, 435
MfeI	CAATTG	1 cut(s)	555
MflI	RGATCY	2 cut(s)	115, 352
MhlI	GDGCHC	2 cut(s)	255, 767
MlsI	TGGCCA	1 cut(s)	549
MluCI	AATT	5 cut(s)	27, 397, 403, 555, 609
MluNI	TGGCCA	1 cut(s)	549
MlyI	GAGTC	2 cut(s)	32, 575
MnlI	CCTC	5 cut(s)	146, 166, 197, 520, 605
Mox20I	TGGCCA	1 cut(s)	549
MscI	TGGCCA	1 cut(s)	549
MseI	TTAA	2 cut(s)	608, 775
Msp20I	TGGCCA	1 cut(s)	549
MspI	CCGG	3 cut(s)	183, 486, 578
MspR9I	CCNGG	4 cut(s)	184, 283, 357, 578
MunI	CAATTG	1 cut(s)	555
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	2 cut(s)	283, 357
NciI	CCSGG	2 cut(s)	184, 578
NdeII	GATC	3 cut(s)	64, 115, 352
NlaIV	GGNNCC	4 cut(s)	252, 354, 562, 593
NmuCI	GTSAC	2 cut(s)	473, 736
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	3 cut(s)	166, 340, 373
PflFI	GACNNNGTC	1 cut(s)	584
PfoI	TCCNGGA	2 cut(s)	182, 355
PkrI	GCNGC	1 cut(s)	733
PleI	GAGTC	2 cut(s)	32, 575
PpsI	GAGTC	2 cut(s)	32, 575
Ppu21I	YACGTR	1 cut(s)	23
Psp6I	CCWGG	2 cut(s)	281, 355
PspEI	GGTNACC	2 cut(s)	488, 504
PspGI	CCWGG	2 cut(s)	281, 355
PspN4I	GGNNCC	4 cut(s)	252, 354, 562, 593
PspPI	GGNCC	2 cut(s)	279, 321
PstI	CTGCAG	1 cut(s)	736
PsuI	RGATCY	2 cut(s)	115, 352
PsyI	GACNNNGTC	1 cut(s)	584
RsaI	GTAC	2 cut(s)	562, 666
RsaNI	GTAC	2 cut(s)	561, 665
SaqAI	TTAA	2 cut(s)	608, 775
SatI	GCNGC	1 cut(s)	732
Sau3AI	GATC	3 cut(s)	64, 115, 352
Sau96I	GGNCC	2 cut(s)	279, 321
ScaI	AGTACT	1 cut(s)	666
SchI	GAGTC	2 cut(s)	32, 575
ScrFI	CCNGG	4 cut(s)	184, 283, 357, 578
SduI	GDGCHC	2 cut(s)	255, 767
SetI	ASST	9 cut(s)	25, 48, 180, 421, 445, 471, 495, 506, 637
SfaNI	GCATC	3 cut(s)	623, 637, 667
SfcI	CTRYAG	2 cut(s)	76, 732
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
SnaBI	TACGTA	1 cut(s)	23
SpeI	ACTAGT	1 cut(s)	97
Sse9I	AATT	5 cut(s)	27, 397, 403, 555, 609
SsiI	CCGC	1 cut(s)	483
SspMI	CTAG	4 cut(s)	98, 224, 632, 662
StyD4I	CCNGG	4 cut(s)	182, 281, 355, 576
TaaI	ACNGT	2 cut(s)	80, 565
TaiI	ACGT	3 cut(s)	25, 180, 445
TaqI	TCGA	3 cut(s)	230, 517, 645
TaqII	GACCGA	1 cut(s)	461
TasI	AATT	5 cut(s)	27, 397, 403, 555, 609
TatI	WGTACW	1 cut(s)	664
TfiI	GAWTC	3 cut(s)	166, 340, 373
Tru1I	TTAA	2 cut(s)	608, 775
Tru9I	TTAA	2 cut(s)	608, 775
TscAI	CASTG	3 cut(s)	96, 224, 741
TseFI	GTSAC	2 cut(s)	473, 736
TseI	GCWGC	1 cut(s)	731
Tsp45I	GTSAC	2 cut(s)	473, 736
TspDTI	ATGAA	2 cut(s)	98, 610
TspRI	CASTG	3 cut(s)	96, 224, 741
Tth111I	GACNNNGTC	1 cut(s)	584
XapI	RAATTY	2 cut(s)	27, 403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XspI	CTAG	4 cut(s)	98, 224, 632, 662
ZrmI	AGTACT	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.