RchiOBHm_Chr5g0012511

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017004
Physical Location & Seq
Forward (+)
8427560 .. 8429158
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29308

Sequence Viewer

Length: 729 bp
ATGGTGCAATTGTCGGGGGCCGAGATCCATGTGGCGGCCGGAATATGGGTGTGGCTTTGGTGTTCGCTGCCCTGCAGCTTTGATCAAAAGGGGTTAGGTCAGGCTGAGAAACAACCTTCCTCTGGTTCTTCATGGGAATCGCCCCAAGGCTGGTGGGGTAGGCGGCGACGTATTGAGTCGAGCGGCCGGAACTGGGTCTGGTTTTCTCCGGCAAGGGATGGCGGAACAGGGGAGGTTAGGGCAGGTTTGGGTGCCCAACGGATTCTGGGCTTCTTTTTGTTTGGGTCATTCAAGATGGGCCTTTGTTTGGCCTTATATTCTGTTTGGATCCGCATTTGGGACCCAGGAGACTTTTTCGGGACGCTGTTTCCTGCTATACTTTGGAACTGGAATTGCGGCAACTTAGGTAGAAGATTGCTCTCTACTCGGCGTATTATTTTGTGTAGAGTGGGCAAGGTCGGTCACACTATCGGCGGTTATCTTGATAGAAGGTTACTCTCTATTCGACGTATTTATATGCGTGGAAGCATGGTCGGCCATACTATTGGTACGGTTTTACACAGCCCAAACTCTGTTCTGGGCGTCATCAAATGCTTAATTGCATCCCTTCGTACCTTTGTTAAGTTTTATTTTCGATGCTTTATTGCATCTAGTATTTCCCTTATTATTTTATATTTTGATGTAGTTTCTACATCTTTAAGTTGTAATTTTTCTTATGTTTATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

27.31

Weight (kDa)

10.05

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 251
AccBSI CCGCTC 1 cut(s) 183
AciI CCGC 7 cut(s) 35, 163, 183, 222, 331, 396, 474
AclWI GGATC 3 cut(s) 19, 322, 335
AcoI YGGCCR 3 cut(s) 36, 184, 535
AcyI GRCGYC 1 cut(s) 582
AfaI GTAC 2 cut(s) 550, 613
AfiI CCNNNNNNNGG 7 cut(s) 34, 45, 122, 150, 193, 307, 337
AgsI TTSAA 1 cut(s) 292
AjnI CCWGG 1 cut(s) 343
AluBI AGCT 1 cut(s) 78
AluI AGCT 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 342
AlwI GGATC 3 cut(s) 19, 322, 335
AoxI GGCC 6 cut(s) 18, 36, 184, 298, 309, 535
ApeKI GCWGC 2 cut(s) 67, 75
AspS9I GGNCC 3 cut(s) 18, 298, 340
AvaII GGWCC 1 cut(s) 340
BaeGI GKGCMC 1 cut(s) 256
BamHI GGATCC 1 cut(s) 327
BanI GGYRCC 1 cut(s) 251
BbvI GCAGC 2 cut(s) 54, 87
BccI CCATC 2 cut(s) 212, 289
BciT130I CCWGG 1 cut(s) 345
BclI TGATCA 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 342
BfaI CTAG 1 cut(s) 651
BfmI CTRYAG 1 cut(s) 73
BfuAI ACCTGC 1 cut(s) 233
BisI GCNGC 6 cut(s) 36, 68, 76, 164, 184, 397
BlsI GCNGC 6 cut(s) 37, 69, 77, 165, 185, 398
Bme1390I CCNGG 1 cut(s) 345
Bme18I GGWCC 1 cut(s) 340
BmgT120I GGNCC 3 cut(s) 18, 298, 340
BmiI GGNNCC 5 cut(s) 19, 253, 329, 341, 342
BmrFI CCNGG 1 cut(s) 345
BmrI ACTGGG 1 cut(s) 202
BmsI GCATC 3 cut(s) 611, 626, 656
BmuI ACTGGG 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 582
BsaJI CCNNGG 2 cut(s) 145, 343
Bsc4I CCNNNNNNNGG 7 cut(s) 34, 45, 122, 150, 193, 307, 337
Bse1I ACTGG 2 cut(s) 197, 392
BseBI CCWGG 1 cut(s) 345
BseDI CCNNGG 2 cut(s) 145, 343
BseGI GGATG 2 cut(s) 223, 602
BseLI CCNNNNNNNGG 7 cut(s) 34, 45, 122, 150, 193, 307, 337
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 2 cut(s) 197, 392
BseSI GKGCMC 1 cut(s) 256
BseX3I CGGCCG 2 cut(s) 36, 184
BseXI GCAGC 2 cut(s) 54, 87
Bsh1285I CGRYCG 2 cut(s) 39, 187
BshFI GGCC 6 cut(s) 20, 38, 186, 300, 311, 537
BshNI GGYRCC 1 cut(s) 251
BsiEI CGRYCG 2 cut(s) 39, 187
BsiSI CCGG 3 cut(s) 39, 187, 209
BslFI GGGAC 2 cut(s) 353, 373
BslI CCNNNNNNNGG 7 cut(s) 34, 45, 122, 150, 193, 307, 337
BsmAI GTCTC 1 cut(s) 342
BsmFI GGGAC 2 cut(s) 353, 373
BsnI GGCC 6 cut(s) 20, 38, 186, 300, 311, 537
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 3 cut(s) 24, 82, 327
BspACI CCGC 7 cut(s) 35, 163, 183, 222, 331, 396, 474
BspANI GGCC 6 cut(s) 20, 38, 186, 300, 311, 537
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 5 cut(s) 19, 253, 329, 341, 342
BspMAI CTGCAG 1 cut(s) 77
BspMI ACCTGC 1 cut(s) 233
BspPI GGATC 3 cut(s) 19, 322, 335
BspT107I GGYRCC 1 cut(s) 251
BsrBI CCGCTC 1 cut(s) 183
BsrI ACTGG 2 cut(s) 197, 392
BssECI CCNNGG 2 cut(s) 145, 343
BssMI GATC 3 cut(s) 24, 82, 327
BssNI GRCGYC 1 cut(s) 582
BssT1I CCWWGG 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 553
BstACI GRCGYC 1 cut(s) 582
BstDEI CTNAG 2 cut(s) 105, 403
BstF5I GGATG 2 cut(s) 223, 602
BstKTI GATC 3 cut(s) 27, 85, 330
BstMAI GTCTC 1 cut(s) 342
BstMBI GATC 3 cut(s) 24, 82, 327
BstMCI CGRYCG 2 cut(s) 39, 187
BstMWI GCNNNNNNNGC 1 cut(s) 534
BstNI CCWGG 1 cut(s) 345
BstSCI CCNGG 1 cut(s) 343
BstSFI CTRYAG 1 cut(s) 73
BstSLI GKGCMC 1 cut(s) 256
BstV1I GCAGC 2 cut(s) 54, 87
BstX2I RGATCY 2 cut(s) 24, 327
BstXI CCANNNNNNTGG 1 cut(s) 545
BstYI RGATCY 2 cut(s) 24, 327
BstZI CGGCCG 2 cut(s) 36, 184
BsuRI GGCC 6 cut(s) 20, 38, 186, 300, 311, 537
BtsCI GGATG 2 cut(s) 223, 602
BveI ACCTGC 1 cut(s) 233
Cfr13I GGNCC 3 cut(s) 18, 298, 340
CseI GACGC 2 cut(s) 370, 571
Csp6I GTAC 2 cut(s) 549, 612
CspCI CAANNNNNGTGG 2 cut(s) 134, 169
CviAII CATG 3 cut(s) 29, 132, 529
CviQI GTAC 2 cut(s) 549, 612
DdeI CTNAG 2 cut(s) 105, 403
DpnI GATC 3 cut(s) 26, 84, 329
DpnII GATC 3 cut(s) 24, 82, 327
EaeI YGGCCR 3 cut(s) 36, 184, 535
EagI CGGCCG 2 cut(s) 36, 184
EciI GGCGGA 1 cut(s) 237
EclXI CGGCCG 2 cut(s) 36, 184
Eco130I CCWWGG 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 340
Eco52I CGGCCG 2 cut(s) 36, 184
EcoO109I RGGNCCY 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 3 cut(s) 32, 135, 532
FaqI GGGAC 2 cut(s) 353, 373
FatI CATG 3 cut(s) 28, 131, 528
FbaI TGATCA 1 cut(s) 82
Fnu4HI GCNGC 6 cut(s) 36, 68, 76, 164, 184, 397
FokI GGATG 2 cut(s) 230, 589
Fsp4HI GCNGC 6 cut(s) 36, 68, 76, 164, 184, 397
FspBI CTAG 1 cut(s) 651
GluI GCNGC 6 cut(s) 36, 68, 76, 164, 184, 397
HaeIII GGCC 6 cut(s) 20, 38, 186, 300, 311, 537
HapII CCGG 3 cut(s) 39, 187, 209
HgaI GACGC 2 cut(s) 370, 571
Hin1I GRCGYC 1 cut(s) 582
Hin1II CATG 3 cut(s) 32, 135, 532
HinfI GANTC 3 cut(s) 137, 176, 262
HpaII CCGG 3 cut(s) 39, 187, 209
Hpy188III TCNNGA 3 cut(s) 292, 358, 482
Hpy99I CGWCG 2 cut(s) 171, 510
HpyAV CCTTC 3 cut(s) 126, 483, 617
HpyCH4III ACNGT 1 cut(s) 553
HpyCH4IV ACGT 2 cut(s) 169, 508
HpyCH4V TGCA 4 cut(s) 7, 75, 602, 647
HpyF10VI GCNNNNNNNGC 1 cut(s) 534
HpyF3I CTNAG 2 cut(s) 105, 403
HpySE526I ACGT 2 cut(s) 169, 508
Hsp92I GRCGYC 1 cut(s) 582
Hsp92II CATG 3 cut(s) 32, 135, 532
KflI GGGWCCC 1 cut(s) 340
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 3 cut(s) 24, 82, 327
Lsp1109I GCAGC 2 cut(s) 54, 87
LweI GCATC 3 cut(s) 611, 626, 656
MaeI CTAG 1 cut(s) 651
MaeII ACGT 2 cut(s) 169, 508
MaeIII GTNAC 2 cut(s) 461, 492
MalI GATC 3 cut(s) 26, 84, 329
MbiI CCGCTC 1 cut(s) 183
MboI GATC 3 cut(s) 24, 82, 327
MboII GAAGA 2 cut(s) 120, 423
MfeI CAATTG 1 cut(s) 8
MflI RGATCY 2 cut(s) 24, 327
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 4 cut(s) 8, 391, 597, 706
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 2 cut(s) 130, 226
MseI TTAA 4 cut(s) 596, 621, 698, 727
MspI CCGG 3 cut(s) 39, 187, 209
MspR9I CCNGG 1 cut(s) 345
MunI CAATTG 1 cut(s) 8
MvaI CCWGG 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 534
NdeII GATC 3 cut(s) 24, 82, 327
NlaIII CATG 3 cut(s) 32, 135, 532
NlaIV GGNNCC 5 cut(s) 19, 253, 329, 341, 342
NmeAIII GCCGAG 2 cut(s) 46, 406
NmuCI GTSAC 1 cut(s) 461
PfeI GAWTC 2 cut(s) 137, 262
PkrI GCNGC 6 cut(s) 37, 69, 77, 165, 185, 398
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PpuMI RGGWCCY 1 cut(s) 340
Psp5II RGGWCCY 1 cut(s) 340
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspN4I GGNNCC 5 cut(s) 19, 253, 329, 341, 342
PspPI GGNCC 3 cut(s) 18, 298, 340
PspPPI RGGWCCY 1 cut(s) 340
PstI CTGCAG 1 cut(s) 77
PsuI RGATCY 2 cut(s) 24, 327
RsaI GTAC 2 cut(s) 550, 613
RsaNI GTAC 2 cut(s) 549, 612
SaqAI TTAA 4 cut(s) 596, 621, 698, 727
SatI GCNGC 6 cut(s) 36, 68, 76, 164, 184, 397
Sau3AI GATC 3 cut(s) 24, 82, 327
Sau96I GGNCC 3 cut(s) 18, 298, 340
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 345
SduI GDGCHC 1 cut(s) 256
SfaNI GCATC 3 cut(s) 611, 626, 656
SfcI CTRYAG 1 cut(s) 73
SinI GGWCC 1 cut(s) 340
Sse9I AATT 4 cut(s) 8, 391, 597, 706
SsiI CCGC 7 cut(s) 35, 163, 183, 222, 331, 396, 474
SspMI CTAG 1 cut(s) 651
StyD4I CCNGG 1 cut(s) 343
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 553
TaiI ACGT 2 cut(s) 172, 511
TaqI TCGA 3 cut(s) 179, 505, 634
TaqII GACCGA 1 cut(s) 449
TasI AATT 4 cut(s) 8, 391, 597, 706
TauI GCSGC 4 cut(s) 38, 166, 186, 399
TfiI GAWTC 2 cut(s) 137, 262
Tru1I TTAA 4 cut(s) 596, 621, 698, 727
Tru9I TTAA 4 cut(s) 596, 621, 698, 727
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 2 cut(s) 67, 75
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 1 cut(s) 120
TspGWI ACGGA 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 340
XspI CTAG 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.