Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0017004

Physical Location & Seq

Genomic Coordinates Forward (+)

15356796 .. 15360057

Gene Structure 3262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG164900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTGCTCAACCAAGCAAAGGCACAGATTTTTGGATGGCCACAGAAGAATTTAGTTGCTTCGATTCCTCTAAGAAAGGATGATGATGTAGAAAGCCAGATTGGAGCAGGGTGTCTTAATGTGAAGGTCATATCAATGCCTCGTTATGATGGGCAACCAAATTCATCAAATGGGGCTACAAATATCAGGTACAAACTTTTCAATCCATACAGTTCAAGAGACCAGTTTAGTGATCTTGTTGGAAAGCGGTCTGCAAGCAGAAGAGCCAGAACATATCAAACTCCAGTCCTGGGGGAAGATACGAAAATTTGCAGAAACAATACAAGAAGCTTGCAACGAAGTTTAAGCAAAGGTGGACCAACTGAGCGCAACTCTATATTCTACAACTCCACCACCACGAAGAAACTGGTCAACCAACTGAAACCAACTCTCTCTTATCATCTTCAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

150

Amino Acids

16.87

Weight (kDa)

10.15

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017004)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0420781 RchiOBHm_Chr5g0012511 RchiOBHm_Chr5g0024641 RchiOBHm_Chr5g0046441
rosa_multiflora	Rmu_sc0010408.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008120 Rroxscaffold_1G00020230
rosa_samantha	Rh1BG386800 Rh2BG593700 Rh5AG166900 Rh5BG498600 Rh5CG164900 Rh6AG268500 Rh6BG104700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	247
AcoI	YGGCCR	1 cut(s)	38
AcsI	RAATTY	3 cut(s)	49, 160, 306
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	2 cut(s)	19, 290
AgsI	TTSAA	3 cut(s)	202, 216, 446
AjnI	CCWGG	1 cut(s)	288
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AluBI	AGCT	1 cut(s)	330
AluI	AGCT	1 cut(s)	330
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	213
AoxI	GGCC	1 cut(s)	38
ApoI	RAATTY	3 cut(s)	49, 160, 306
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	356
BalI	TGGCCA	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	9
BccI	CCATC	2 cut(s)	30, 143
BciT130I	CCWGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	213
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	356
BmrFI	CCNGG	1 cut(s)	290
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
BpmI	CTGGAG	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 290
Bse1I	ACTGG	3 cut(s)	223, 284, 411
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	2 cut(s)	41, 85
BseLI	CCNNNNNNNGG	2 cut(s)	19, 290
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	3 cut(s)	223, 284, 411
BshFI	GGCC	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	9
BslI	CCNNNNNNNGG	2 cut(s)	19, 290
BsmAI	GTCTC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	40
Bso31I	GGTCTC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	355
BspQI	GCTCTTC	1 cut(s)	256
BspTNI	GGTCTC	1 cut(s)	213
BsrI	ACTGG	3 cut(s)	223, 284, 411
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	1 cut(s)	232
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	256
BstC8I	GCNNGC	2 cut(s)	256, 332
BstDEI	CTNAG	2 cut(s)	71, 363
BstF5I	GGATG	2 cut(s)	41, 85
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	232
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	40
BtsCI	GGATG	2 cut(s)	41, 85
Cac8I	GCNNGC	2 cut(s)	256, 332
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	190
CviJI	RGCY	5 cut(s)	40, 96, 176, 266, 330
CviKI_1	RGCY	5 cut(s)	40, 96, 176, 266, 330
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	2 cut(s)	71, 363
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Eco31I	GGTCTC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	288
FaiI	YATR	5 cut(s)	131, 147, 208, 274, 377
FokI	GGATG	2 cut(s)	48, 92
GlaI	GCGC	1 cut(s)	368
GsuI	CTGGAG	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	369
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	328
HinfI	GANTC	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	356, 412
Hpy188III	TCNNGA	1 cut(s)	216
Hpy8I	GTNNAC	2 cut(s)	356, 412
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4V	TGCA	3 cut(s)	254, 312, 334
HpyF3I	CTNAG	2 cut(s)	71, 363
HspAI	GCGC	1 cut(s)	367
Kzo9I	GATC	1 cut(s)	232
LguI	GCTCTTC	1 cut(s)	256
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	9 cut(s)	93, 110, 172, 236, 275, 280, 297, 302, 392
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	5 cut(s)	58, 273, 308, 412, 434
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	1 cut(s)	40
MluCI	AATT	4 cut(s)	49, 160, 306, 448
MluNI	TGGCCA	1 cut(s)	40
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	2 cut(s)	78, 150
Mox20I	TGGCCA	1 cut(s)	40
MscI	TGGCCA	1 cut(s)	40
MseI	TTAA	3 cut(s)	117, 344, 451
MslI	CAYNNNNRTG	1 cut(s)	134
Msp20I	TGGCCA	1 cut(s)	40
MspR9I	CCNGG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	290
NdeII	GATC	1 cut(s)	232
PciSI	GCTCTTC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	356
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	134
SapI	GCTCTTC	1 cut(s)	256
SaqAI	TTAA	3 cut(s)	117, 344, 451
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	4 cut(s)	129, 191, 332, 355
SinI	GGWCC	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	134
Sse9I	AATT	4 cut(s)	49, 160, 306, 448
SsiI	CCGC	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	212
TaqI	TCGA	1 cut(s)	62
TasI	AATT	4 cut(s)	49, 160, 306, 448
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	3 cut(s)	117, 344, 451
Tru9I	TTAA	3 cut(s)	117, 344, 451
TspDTI	ATGAA	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	356
XapI	RAATTY	3 cut(s)	49, 160, 306
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.