RchiOBHm_Chr5g0024641

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017004
Physical Location & Seq
Forward (+)
18736979 .. 18738202
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30438

Sequence Viewer

Length: 618 bp
ATGATTACTGGTGGTGGGAGGATGGCAGATCGGCGGCCGGAATCTGGGGTTGGTTTTGGTGTTCGCTGCCCTGTAGATTTGATCAGAGGGGGTTGGGTCGGGCTAAGAATCCACCTTCCTCTGGTTCTTCGTGGGAACCGCCCCAAGTTTGGTGGGGTAGGCGGCGGCGCACTGAATCGAGTGGCTGGAACTGGGGACGGGTTTATCCTGCAAGGGATGGCGGAACAAGGGAGGTCAGGGCAGGTTCGGGTACCCATAGAGGTTTTGGGTACCCAACTGTGGATCTGGGCTTCTTTTTGTTTGGGCCATTCAAGATGGGCCTTTGTTTGGGCCTTGTCTTCTGTTTGGATCTGCATTTGGGATCCAGGAGACTTTTTCGGGACTCTGTTTTCTGCTACACTTTGGAAATGGAATTGCAGCAATTTAGGTAGAAGATTGCTCTCTACTCGACGTATTATTTTGCATGGGGTGGGAAGATCGGTCACACTACCGGCGGTTACCTGGATAGAAGGTTATCCTCTATTCGACTTATATCTTTGCATGGATGTATGGTCGACCATACTGTTGGTACCGTCTTACATAGCCCGGACTCTGTCTGGTGCTTCATCAAATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.43

Weight (kDa)

10.19

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 232
Acc65I GGTACC 3 cut(s) 250, 269, 568
AccB1I GGYRCC 3 cut(s) 250, 269, 568
AccI GTMKAC 1 cut(s) 554
AciI CCGC 6 cut(s) 34, 139, 162, 165, 221, 494
AclWI GGATC 4 cut(s) 290, 356, 356, 369
AcoI YGGCCR 1 cut(s) 35
AfaI GTAC 3 cut(s) 252, 271, 570
AfiI CCNNNNNNNGG 5 cut(s) 44, 121, 149, 279, 327
AgsI TTSAA 1 cut(s) 312
AjnI CCWGG 2 cut(s) 364, 500
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
Alw26I GTCTC 1 cut(s) 363
AlwI GGATC 4 cut(s) 290, 356, 356, 369
AoxI GGCC 4 cut(s) 35, 304, 318, 330
ApeKI GCWGC 2 cut(s) 66, 417
Asp718I GGTACC 3 cut(s) 250, 269, 568
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 3 cut(s) 304, 318, 330
AsuC2I CCSGG 1 cut(s) 586
BamHI GGATCC 1 cut(s) 361
BanI GGYRCC 3 cut(s) 250, 269, 568
BbsI GAAGAC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 53, 429
BccI CCATC 3 cut(s) 16, 211, 309
BciT130I CCWGG 2 cut(s) 366, 502
BclI TGATCA 1 cut(s) 81
BcnI CCSGG 1 cut(s) 586
BcoDI GTCTC 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 72
BfuAI ACCTGC 1 cut(s) 232
BisI GCNGC 5 cut(s) 35, 67, 163, 166, 418
BlsI GCNGC 5 cut(s) 36, 68, 164, 167, 419
Bme1390I CCNGG 3 cut(s) 366, 502, 586
BmgT120I GGNCC 3 cut(s) 304, 318, 330
BmiI GGNNCC 5 cut(s) 137, 252, 271, 363, 570
BmrFI CCNGG 3 cut(s) 366, 502, 586
BmrI ACTGGG 1 cut(s) 201
BmuI ACTGGG 1 cut(s) 201
BpiI GAAGAC 1 cut(s) 330
BpuMI CCSGG 1 cut(s) 586
Bsc4I CCNNNNNNNGG 5 cut(s) 44, 121, 149, 279, 327
Bse118I RCCGGY 1 cut(s) 490
Bse1I ACTGG 2 cut(s) 13, 196
BseBI CCWGG 2 cut(s) 366, 502
BseGI GGATG 3 cut(s) 27, 222, 550
BseLI CCNNNNNNNGG 5 cut(s) 44, 121, 149, 279, 327
BseNI ACTGG 2 cut(s) 13, 196
BseX3I CGGCCG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 53, 429
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 4 cut(s) 37, 306, 320, 332
BshNI GGYRCC 3 cut(s) 250, 269, 568
BsiEI CGRYCG 1 cut(s) 38
BsiSI CCGG 3 cut(s) 38, 491, 586
BslFI GGGAC 2 cut(s) 209, 394
BslI CCNNNNNNNGG 5 cut(s) 44, 121, 149, 279, 327
BsmAI GTCTC 1 cut(s) 363
BsmFI GGGAC 2 cut(s) 209, 394
BsnI GGCC 4 cut(s) 37, 306, 320, 332
Bsp143I GATC 6 cut(s) 28, 81, 282, 348, 361, 476
BspACI CCGC 6 cut(s) 34, 139, 162, 165, 221, 494
BspANI GGCC 4 cut(s) 37, 306, 320, 332
BspLI GGNNCC 5 cut(s) 137, 252, 271, 363, 570
BspMI ACCTGC 1 cut(s) 232
BspPI GGATC 4 cut(s) 290, 356, 356, 369
BspT107I GGYRCC 3 cut(s) 250, 269, 568
BsrFI RCCGGY 1 cut(s) 490
BsrI ACTGG 2 cut(s) 13, 196
BssAI RCCGGY 1 cut(s) 490
BssMI GATC 6 cut(s) 28, 81, 282, 348, 361, 476
Bst2UI CCWGG 2 cut(s) 366, 502
Bst4CI ACNGT 3 cut(s) 279, 564, 573
BstDEI CTNAG 1 cut(s) 104
BstEII GGTNACC 1 cut(s) 496
BstF5I GGATG 3 cut(s) 27, 222, 550
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 6 cut(s) 31, 84, 285, 351, 364, 479
BstMAI GTCTC 1 cut(s) 363
BstMBI GATC 6 cut(s) 28, 81, 282, 348, 361, 476
BstMCI CGRYCG 1 cut(s) 38
BstNI CCWGG 2 cut(s) 366, 502
BstPI GGTNACC 1 cut(s) 496
BstSCI CCNGG 3 cut(s) 364, 500, 584
BstSFI CTRYAG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 53, 429
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 3 cut(s) 282, 348, 361
BstXI CCANNNNNNTGG 1 cut(s) 565
BstYI RGATCY 3 cut(s) 282, 348, 361
BstZI CGGCCG 1 cut(s) 35
BsuRI GGCC 4 cut(s) 37, 306, 320, 332
BtsCI GGATG 3 cut(s) 27, 222, 550
BtsIMutI CAGTG 1 cut(s) 170
BveI ACCTGC 1 cut(s) 232
CfoI GCGC 1 cut(s) 170
Cfr10I RCCGGY 1 cut(s) 490
Cfr13I GGNCC 3 cut(s) 304, 318, 330
Csp6I GTAC 3 cut(s) 251, 270, 569
CspCI CAANNNNNGTGG 2 cut(s) 133, 168
CviAII CATG 2 cut(s) 464, 541
CviJI RGCY 8 cut(s) 37, 103, 185, 290, 306, 320, 332, 584
CviKI_1 RGCY 8 cut(s) 37, 103, 185, 290, 306, 320, 332, 584
CviQI GTAC 3 cut(s) 251, 270, 569
DdeI CTNAG 1 cut(s) 104
DpnI GATC 6 cut(s) 30, 83, 284, 350, 363, 478
DpnII GATC 6 cut(s) 28, 81, 282, 348, 361, 476
EaeI YGGCCR 1 cut(s) 35
EagI CGGCCG 1 cut(s) 35
EciI GGCGGA 1 cut(s) 236
EclXI CGGCCG 1 cut(s) 35
Eco52I CGGCCG 1 cut(s) 35
Eco91I GGTNACC 1 cut(s) 496
EcoO65I GGTNACC 1 cut(s) 496
EcoRII CCWGG 2 cut(s) 364, 500
FaeI CATG 2 cut(s) 467, 544
FaiI YATR 7 cut(s) 257, 465, 532, 542, 550, 560, 581
FaqI GGGAC 2 cut(s) 209, 394
FatI CATG 2 cut(s) 463, 540
FbaI TGATCA 1 cut(s) 81
FblI GTMKAC 1 cut(s) 554
Fnu4HI GCNGC 5 cut(s) 35, 67, 163, 166, 418
FokI GGATG 3 cut(s) 34, 229, 557
Fsp4HI GCNGC 5 cut(s) 35, 67, 163, 166, 418
GlaI GCGC 1 cut(s) 169
GluI GCNGC 5 cut(s) 35, 67, 163, 166, 418
HaeIII GGCC 4 cut(s) 37, 306, 320, 332
HapII CCGG 3 cut(s) 38, 491, 586
HhaI GCGC 1 cut(s) 170
Hin1II CATG 2 cut(s) 467, 544
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HincII GTYRAC 1 cut(s) 555
HindII GTYRAC 1 cut(s) 555
HinfI GANTC 5 cut(s) 41, 108, 175, 382, 589
HpaII CCGG 3 cut(s) 38, 491, 586
Hpy166II GTNNAC 1 cut(s) 555
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 2 cut(s) 312, 379
Hpy8I GTNNAC 1 cut(s) 555
Hpy99I CGWCG 1 cut(s) 453
HpyAV CCTTC 2 cut(s) 125, 503
HpyCH4III ACNGT 3 cut(s) 279, 564, 573
HpyCH4IV ACGT 1 cut(s) 451
HpyCH4V TGCA 5 cut(s) 211, 354, 417, 463, 540
HpyF3I CTNAG 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 451
Hsp92II CATG 2 cut(s) 467, 544
HspAI GCGC 1 cut(s) 168
KpnI GGTACC 3 cut(s) 254, 273, 572
Ksp22I TGATCA 1 cut(s) 81
Kzo9I GATC 6 cut(s) 28, 81, 282, 348, 361, 476
Lsp1109I GCAGC 2 cut(s) 53, 429
MaeII ACGT 1 cut(s) 451
MaeIII GTNAC 2 cut(s) 481, 496
MalI GATC 6 cut(s) 30, 83, 284, 350, 363, 478
MboI GATC 6 cut(s) 28, 81, 282, 348, 361, 476
MboII GAAGA 4 cut(s) 119, 330, 444, 486
MflI RGATCY 3 cut(s) 282, 348, 361
MluCI AATT 2 cut(s) 412, 421
MlyI GAGTC 2 cut(s) 376, 583
MnlI CCTC 6 cut(s) 12, 80, 129, 225, 253, 528
MseI TTAA 1 cut(s) 616
MspI CCGG 3 cut(s) 38, 491, 586
MspR9I CCNGG 3 cut(s) 366, 502, 586
MvaI CCWGG 2 cut(s) 366, 502
NciI CCSGG 1 cut(s) 586
NdeII GATC 6 cut(s) 28, 81, 282, 348, 361, 476
NlaIII CATG 2 cut(s) 467, 544
NlaIV GGNNCC 5 cut(s) 137, 252, 271, 363, 570
NmuCI GTSAC 1 cut(s) 481
PfeI GAWTC 3 cut(s) 41, 108, 175
PflFI GACNNNGTC 1 cut(s) 592
PfoI TCCNGGA 1 cut(s) 364
PkrI GCNGC 5 cut(s) 36, 68, 164, 167, 419
PleI GAGTC 2 cut(s) 376, 583
PpsI GAGTC 2 cut(s) 376, 583
Psp6I CCWGG 2 cut(s) 364, 500
PspEI GGTNACC 1 cut(s) 496
PspGI CCWGG 2 cut(s) 364, 500
PspN4I GGNNCC 5 cut(s) 137, 252, 271, 363, 570
PspPI GGNCC 3 cut(s) 304, 318, 330
PsuI RGATCY 3 cut(s) 282, 348, 361
PsyI GACNNNGTC 1 cut(s) 592
RsaI GTAC 3 cut(s) 252, 271, 570
RsaNI GTAC 3 cut(s) 251, 270, 569
SalI GTCGAC 1 cut(s) 553
SaqAI TTAA 1 cut(s) 616
SatI GCNGC 5 cut(s) 35, 67, 163, 166, 418
Sau3AI GATC 6 cut(s) 28, 81, 282, 348, 361, 476
Sau96I GGNCC 3 cut(s) 304, 318, 330
SchI GAGTC 2 cut(s) 376, 583
ScrFI CCNGG 3 cut(s) 366, 502, 586
SetI ASST 8 cut(s) 117, 236, 246, 264, 430, 454, 503, 514
SfcI CTRYAG 1 cut(s) 72
Sse9I AATT 2 cut(s) 412, 421
SsiI CCGC 6 cut(s) 34, 139, 162, 165, 221, 494
StyD4I CCNGG 3 cut(s) 364, 500, 584
TaaI ACNGT 3 cut(s) 279, 564, 573
TaiI ACGT 1 cut(s) 454
TaqI TCGA 4 cut(s) 178, 448, 525, 554
TaqII GACCGA 1 cut(s) 469
TasI AATT 2 cut(s) 412, 421
TauI GCSGC 3 cut(s) 37, 165, 168
TfiI GAWTC 3 cut(s) 41, 108, 175
Tru1I TTAA 1 cut(s) 616
Tru9I TTAA 1 cut(s) 616
TscAI CASTG 1 cut(s) 177
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 2 cut(s) 66, 417
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 1 cut(s) 594
TspRI CASTG 1 cut(s) 177
Tth111I GACNNNGTC 1 cut(s) 592
XcmI CCANNNNNNNNNTGG 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.