Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0017004

Physical Location & Seq

Genomic Coordinates Forward (+)

46141209 .. 46156315

Gene Structure 15107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG268500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTCTAAAGCTCGCGTCTCCGTCAACATCAATGTCCTCCACCGCAAGGATTTTCGGGACTACCGAGTCCCTCATCATCCTATGGGGCTGCTAAAGTCTCCAGCTCCAATGGTGCTCAACCAAGCAATGGCACAGATTTTTGGATGGCCACAGAAGAATTTAGTTGCTTCGATTCCTCTAAGAAAGGATGATGATGTAGAAAGCCAGATTGGAGCAGGGTGTCTTAATGTGAAGCCTCGTTATGATGGGCAACCAAATTCATCAAATGGGACTACAAATATCAGGCACAAACTTTTCAATCCATACAGTTCAAGAGACCAGTCGCCACACTACCCTCAACTCCTCGTAGTCACCATACACCCTCAATTCCTCAAAGACCTAATGTCGAAACCAACACATGCTTCCACCGATGCTGCTGTAGACAACGGAGATACTCATGCGATCTCTAGCAGTGCAGCCACTCCTTTGGCTCCCACAGCTCTCCCGTTTCGAGCTCCCACAGCTTTCTCGCTCCGCACCTTCTCTGGTTTCCACAGCTTTCCCATATTACCTCACTGCAAAACTCCAAAACAGTCAAAACCTGGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

196

Amino Acids

21.55

Weight (kDa)

9.91

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017004)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0420781 RchiOBHm_Chr5g0012511 RchiOBHm_Chr5g0024641 RchiOBHm_Chr5g0046441
rosa_multiflora	Rmu_sc0010408.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008120 Rroxscaffold_1G00020230
rosa_samantha	Rh1BG386800 Rh2BG593700 Rh5AG166900 Rh5BG498600 Rh5CG164900 Rh6AG268500 Rh6BG104700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
AccB7I	CCANNNNNTGG	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	420
AccII	CGCG	1 cut(s)	15
AciI	CCGC	2 cut(s)	43, 514
AcoI	YGGCCR	1 cut(s)	146
AcsI	RAATTY	2 cut(s)	157, 256
AfiI	CCNNNNNNNGG	2 cut(s)	46, 127
AgsI	TTSAA	2 cut(s)	298, 312
AhdI	GACNNNNNGTC	1 cut(s)	382
AjnI	CCWGG	1 cut(s)	580
AjuI	GAANNNNNNNTTGG	4 cut(s)	192, 224, 385, 417
AluBI	AGCT	7 cut(s)	11, 104, 479, 494, 503, 537, 588
AluI	AGCT	7 cut(s)	11, 104, 479, 494, 503, 537, 588
Alw21I	GWGCWC	2 cut(s)	117, 496
Alw26I	GTCTC	3 cut(s)	22, 102, 309
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	4 cut(s)	88, 413, 455, 585
ApoI	RAATTY	2 cut(s)	157, 256
AsuHPI	GGTGA	1 cut(s)	343
BalI	TGGCCA	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	496
Bbv12I	GWGCWC	2 cut(s)	117, 496
BbvI	GCAGC	3 cut(s)	75, 400, 467
BccI	CCATC	2 cut(s)	138, 239
BciT130I	CCWGG	1 cut(s)	582
BcoDI	GTCTC	3 cut(s)	22, 102, 309
BfaI	CTAG	1 cut(s)	447
BfmI	CTRYAG	1 cut(s)	417
BisI	GCNGC	4 cut(s)	89, 414, 456, 586
BlsI	GCNGC	4 cut(s)	90, 415, 457, 587
Bme1390I	CCNGG	1 cut(s)	582
BmeRI	GACNNNNNGTC	1 cut(s)	382
BmiI	GGNNCC	1 cut(s)	471
BmrFI	CCNGG	1 cut(s)	582
BmsI	GCATC	1 cut(s)	400
BpmI	CTGGAG	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 127
Bse1I	ACTGG	1 cut(s)	319
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	582
BseGI	GGATG	3 cut(s)	76, 149, 193
BseLI	CCNNNNNNNGG	2 cut(s)	46, 127
BseMI	GCAATG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	1 cut(s)	332
BseXI	GCAGC	3 cut(s)	75, 400, 467
BsgI	GTGCAG	1 cut(s)	474
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	148
BsiHKAI	GWGCWC	2 cut(s)	117, 496
BslFI	GGGAC	3 cut(s)	53, 71, 283
BslI	CCNNNNNNNGG	2 cut(s)	46, 127
BsmAI	GTCTC	3 cut(s)	22, 102, 309
BsmBI	CGTCTC	1 cut(s)	22
BsmFI	GGGAC	3 cut(s)	53, 71, 283
BsnI	GGCC	1 cut(s)	148
Bso31I	GGTCTC	1 cut(s)	309
Bsp1286I	GDGCHC	2 cut(s)	117, 496
Bsp143I	GATC	1 cut(s)	441
BspACI	CCGC	2 cut(s)	43, 514
BspANI	GGCC	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	471
BspTNI	GGTCTC	1 cut(s)	309
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	319
BssMI	GATC	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	582
Bst4CI	ACNGT	2 cut(s)	308, 573
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	179
BstF5I	GGATG	3 cut(s)	76, 149, 193
BstFNI	CGCG	1 cut(s)	15
BstKTI	GATC	1 cut(s)	444
BstMAI	GTCTC	3 cut(s)	22, 102, 309
BstMBI	GATC	1 cut(s)	441
BstMWI	GCNNNNNNNGC	2 cut(s)	476, 500
BstNI	CCWGG	1 cut(s)	582
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	580
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	3 cut(s)	75, 400, 467
BstXI	CCANNNNNNTGG	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	148
BtsCI	GGATG	3 cut(s)	76, 149, 193
BtsI	GCAGTG	2 cut(s)	457, 553
BtsIMutI	CAGTG	2 cut(s)	457, 553
Cac8I	GCNNGC	1 cut(s)	13
CseI	GACGC	1 cut(s)	4
CviAII	CATG	2 cut(s)	398, 437
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	1 cut(s)	443
DpnII	GATC	1 cut(s)	441
DrdI	GACNNNNNNGTC	1 cut(s)	65
DriI	GACNNNNNGTC	1 cut(s)	382
DseDI	GACNNNNNNGTC	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	146
Eam1105I	GACNNNNNGTC	1 cut(s)	382
Ecl136II	GAGCTC	1 cut(s)	494
Eco24I	GRGCYC	1 cut(s)	496
Eco31I	GGTCTC	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	494
EcoICRI	GAGCTC	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	580
EcoT38I	GRGCYC	1 cut(s)	496
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	2 cut(s)	401, 440
FaiI	YATR	7 cut(s)	83, 243, 304, 356, 399, 438, 545
FaqI	GGGAC	3 cut(s)	53, 71, 283
FatI	CATG	2 cut(s)	397, 436
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	4 cut(s)	89, 414, 456, 586
FokI	GGATG	3 cut(s)	63, 156, 200
FriOI	GRGCYC	1 cut(s)	496
Fsp4HI	GCNGC	4 cut(s)	89, 414, 456, 586
FspBI	CTAG	1 cut(s)	447
GluI	GCNGC	4 cut(s)	89, 414, 456, 586
GsuI	CTGGAG	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	148
HgaI	GACGC	1 cut(s)	4
Hin1II	CATG	2 cut(s)	401, 440
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	2 cut(s)	66, 172
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	2 cut(s)	25, 421
Hpy188III	TCNNGA	2 cut(s)	56, 312
Hpy8I	GTNNAC	2 cut(s)	25, 421
HpyAV	CCTTC	1 cut(s)	529
HpyCH4III	ACNGT	2 cut(s)	308, 573
HpyCH4V	TGCA	2 cut(s)	455, 558
HpyF10VI	GCNNNNNNNGC	2 cut(s)	476, 500
HpyF3I	CTNAG	1 cut(s)	179
Hsp92II	CATG	2 cut(s)	401, 440
Kzo9I	GATC	1 cut(s)	441
LmnI	GCTCC	5 cut(s)	109, 212, 475, 499, 516
LpnPI	CCDG	7 cut(s)	114, 201, 218, 268, 332, 510, 567
Lsp1109I	GCAGC	3 cut(s)	75, 400, 467
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	1 cut(s)	447
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	1 cut(s)	443
MboI	GATC	1 cut(s)	441
MboII	GAAGA	1 cut(s)	166
MhlI	GDGCHC	2 cut(s)	117, 496
MlsI	TGGCCA	1 cut(s)	148
MluCI	AATT	3 cut(s)	157, 256, 365
MluNI	TGGCCA	1 cut(s)	148
MlyI	GAGTC	1 cut(s)	75
MnlI	CCTC	9 cut(s)	47, 81, 186, 246, 345, 353, 372, 380, 561
Mox20I	TGGCCA	1 cut(s)	148
MscI	TGGCCA	1 cut(s)	148
MseI	TTAA	1 cut(s)	225
Msp20I	TGGCCA	1 cut(s)	148
MspA1I	CMGCKG	1 cut(s)	588
MspR9I	CCNGG	1 cut(s)	582
MvaI	CCWGG	1 cut(s)	582
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	476, 500
NdeII	GATC	1 cut(s)	441
NlaIII	CATG	2 cut(s)	401, 440
NlaIV	GGNNCC	1 cut(s)	471
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	1 cut(s)	401
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	172
PflMI	CCANNNNNTGG	1 cut(s)	127
PkrI	GCNGC	4 cut(s)	90, 415, 457, 587
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
Psp124BI	GAGCTC	1 cut(s)	496
Psp6I	CCWGG	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	580
PspN4I	GGNNCC	1 cut(s)	471
PvuII	CAGCTG	1 cut(s)	588
SacI	GAGCTC	1 cut(s)	496
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	4 cut(s)	89, 414, 456, 586
Sau3AI	GATC	1 cut(s)	441
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	582
SduI	GDGCHC	2 cut(s)	117, 496
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	1 cut(s)	417
Sse9I	AATT	3 cut(s)	157, 256, 365
SsiI	CCGC	2 cut(s)	43, 514
SspMI	CTAG	1 cut(s)	447
SstI	GAGCTC	1 cut(s)	496
StyD4I	CCNGG	1 cut(s)	580
TaaI	ACNGT	2 cut(s)	308, 573
TaqI	TCGA	3 cut(s)	170, 386, 490
TasI	AATT	3 cut(s)	157, 256, 365
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	2 cut(s)	457, 560
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	4 cut(s)	88, 413, 455, 585
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	249
TspGWI	ACGGA	2 cut(s)	10, 441
TspRI	CASTG	2 cut(s)	457, 560
Van91I	CCANNNNNTGG	1 cut(s)	127
XapI	RAATTY	2 cut(s)	157, 256
XceI	RCATGY	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	420
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.