Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017004

Physical Location & Seq

Genomic Coordinates Reverse (-)

24570056 .. 24572597

Gene Structure 2542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00020230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCTTGAAAATGCTCATGTAAGTACAGTCGCTTTATTAGATCGGTGGCTGCGGGTGACCGGAGGGTTTGGGATCCGGGACTTCGCAGCCGTCATAGTGCCGGCAAGGCTAAAATTAGATTTGCTAGACATATCTGGTCCGGTGGTGATGCAGCTAGGTGAGAGGCTTACGTCGGGGCGTTGCTTGACCATGATTACAGGGTGGTGGGAGGATGGCATATCAACAGCCGAAATCGGGCTTGGCTTTGGTGTTCGCTGCCTTGTAGCTTTGATCAAAAGGGGTTGGGTCGGGCTGAGAAACAACCTACCTCTCGGTTCTTCATGGAAACCTCCCCAAGTATGGTGGGGTAGGTGGCGGCGCATTGAATCTAGCAACCGGAACTCGGGTTCAGATTTATCCGGCGAGGGATGGCGGAACAGGGAGGCTAGGGCAGGAATCCAAATCCTTGCTCAAGTAATTCGCTCTCGCAGCTCGAACAAGAGTGAAGTAGAAATCAAAACCAAGAAAGTGGATCCAATGAAGCACACCAGATTTGTCGGTACTCAACATCCCACACTCCAATGCAACCTCTACAACAACAACCCCAACAAACATATTGGCCGCAACAAATTCGAAACCCGAGGCCATCATCTCTACAATGAAGGCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

24.35

Weight (kDa)

10.26

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017004)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0420781 RchiOBHm_Chr5g0012511 RchiOBHm_Chr5g0024641 RchiOBHm_Chr5g0046441
rosa_multiflora	Rmu_sc0010408.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008120 Rroxscaffold_1G00020230
rosa_samantha	Rh1BG386800 Rh2BG593700 Rh5AG166900 Rh5BG498600 Rh5CG164900 Rh6AG268500 Rh6BG104700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	52, 355, 412, 601
AclWI	GGATC	4 cut(s)	67, 80, 506, 519
AcoI	YGGCCR	1 cut(s)	598
AcsI	RAATTY	1 cut(s)	608
AfaI	GTAC	2 cut(s)	25, 541
AfiI	CCNNNNNNNGG	3 cut(s)	234, 339, 382
AgsI	TTSAA	2 cut(s)	8, 365
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AloI	GAACNNNNNNTCC	2 cut(s)	370, 402
AluBI	AGCT	3 cut(s)	154, 266, 471
AluI	AGCT	3 cut(s)	154, 266, 471
AlwI	GGATC	4 cut(s)	67, 80, 506, 519
Ama87I	CYCGRG	2 cut(s)	382, 618
AoxI	GGCC	2 cut(s)	598, 622
ApeKI	GCWGC	5 cut(s)	49, 86, 151, 255, 468
ApoI	RAATTY	1 cut(s)	608
AspLEI	GCGC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	137
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	3 cut(s)	67, 157, 170
AsuII	TTCGAA	1 cut(s)	612
AvaI	CYCGRG	2 cut(s)	382, 618
AvaII	GGWCC	1 cut(s)	137
BamHI	GGATCC	2 cut(s)	72, 511
BbvI	GCAGC	5 cut(s)	36, 98, 163, 242, 480
BccI	CCATC	3 cut(s)	206, 402, 633
BceAI	ACGGC	1 cut(s)	74
BcgI	CGANNNNNNTGC	2 cut(s)	592, 626
BclI	TGATCA	1 cut(s)	270
BcnI	CCSGG	1 cut(s)	77
BfaI	CTAG	5 cut(s)	125, 155, 369, 426, 649
BglI	GCCNNNNNGGC	1 cut(s)	106
BisI	GCNGC	7 cut(s)	50, 87, 152, 256, 356, 469, 601
BlsI	GCNGC	7 cut(s)	51, 88, 153, 257, 357, 470, 602
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	137
BmeT110I	CYCGRG	2 cut(s)	382, 618
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	2 cut(s)	74, 513
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	138
Bpu14I	TTCGAA	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	619
BsaWI	WCCGGW	3 cut(s)	59, 139, 375
Bsc4I	CCNNNNNNNGG	3 cut(s)	234, 339, 382
Bse118I	RCCGGY	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	619
BseGI	GGATG	3 cut(s)	217, 413, 547
BseLI	CCNNNNNNNGG	3 cut(s)	234, 339, 382
BseMII	CTCAG	1 cut(s)	284
BseXI	GCAGC	5 cut(s)	36, 98, 163, 242, 480
BshFI	GGCC	2 cut(s)	600, 624
BsiHKCI	CYCGRG	2 cut(s)	382, 618
BsiSI	CCGG	6 cut(s)	60, 76, 101, 140, 376, 399
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	3 cut(s)	234, 339, 382
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	2 cut(s)	600, 624
BsoBI	CYCGRG	2 cut(s)	382, 618
Bsp119I	TTCGAA	1 cut(s)	612
Bsp143I	GATC	4 cut(s)	40, 72, 270, 511
BspACI	CCGC	4 cut(s)	52, 355, 412, 601
BspANI	GGCC	2 cut(s)	600, 624
BspCNI	CTCAG	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	74, 513
BspPI	GGATC	4 cut(s)	67, 80, 506, 519
BspT104I	TTCGAA	1 cut(s)	612
BsrFI	RCCGGY	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	619
BssMI	GATC	4 cut(s)	40, 72, 270, 511
Bst4CI	ACNGT	1 cut(s)	28
BstBI	TTCGAA	1 cut(s)	612
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	293
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	3 cut(s)	217, 413, 547
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	4 cut(s)	43, 75, 273, 514
BstMBI	GATC	4 cut(s)	40, 72, 270, 511
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 468
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	75
BstV1I	GCAGC	5 cut(s)	36, 98, 163, 242, 480
BstX2I	RGATCY	2 cut(s)	72, 511
BstXI	CCANNNNNNTGG	1 cut(s)	508
BstYI	RGATCY	2 cut(s)	72, 511
BsuRI	GGCC	2 cut(s)	600, 624
BtsCI	GGATG	3 cut(s)	217, 413, 547
Cac8I	GCNNGC	1 cut(s)	102
CfoI	GCGC	1 cut(s)	360
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	137
Csp6I	GTAC	2 cut(s)	24, 540
CspCI	CAANNNNNGTGG	2 cut(s)	323, 358
CviAII	CATG	3 cut(s)	17, 190, 321
CviQI	GTAC	2 cut(s)	24, 540
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	4 cut(s)	42, 74, 272, 513
DpnII	GATC	4 cut(s)	40, 72, 270, 511
EaeI	YGGCCR	1 cut(s)	598
EciI	GGCGGA	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	137
Eco88I	CYCGRG	2 cut(s)	382, 618
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
FaeI	CATG	3 cut(s)	20, 193, 324
FaiI	YATR	8 cut(s)	18, 95, 131, 191, 218, 322, 340, 594
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	3 cut(s)	16, 189, 320
FauI	CCCGC	1 cut(s)	45
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	7 cut(s)	50, 87, 152, 256, 356, 469, 601
FokI	GGATG	3 cut(s)	224, 420, 534
Fsp4HI	GCNGC	7 cut(s)	50, 87, 152, 256, 356, 469, 601
FspBI	CTAG	5 cut(s)	125, 155, 369, 426, 649
GlaI	GCGC	1 cut(s)	359
GluI	GCNGC	7 cut(s)	50, 87, 152, 256, 356, 469, 601
HaeIII	GGCC	2 cut(s)	600, 624
HapII	CCGG	6 cut(s)	60, 76, 101, 140, 376, 399
HhaI	GCGC	1 cut(s)	360
Hin1II	CATG	3 cut(s)	20, 193, 324
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HinfI	GANTC	2 cut(s)	365, 435
HpaII	CCGG	6 cut(s)	60, 76, 101, 140, 376, 399
HphI	GGTGA	3 cut(s)	67, 157, 170
Hpy188I	TCNGA	1 cut(s)	391
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	635
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	170
HpyCH4V	TGCA	2 cut(s)	151, 564
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 468
HpyF3I	CTNAG	1 cut(s)	293
HpySE526I	ACGT	1 cut(s)	170
Hsp92II	CATG	3 cut(s)	20, 193, 324
HspAI	GCGC	1 cut(s)	358
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	40, 72, 270, 511
Lsp1109I	GCAGC	5 cut(s)	36, 98, 163, 242, 480
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	5 cut(s)	125, 155, 369, 426, 649
MaeII	ACGT	1 cut(s)	170
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	4 cut(s)	42, 74, 272, 513
MboI	GATC	4 cut(s)	40, 72, 270, 511
MboII	GAAGA	1 cut(s)	309
MflI	RGATCY	2 cut(s)	72, 511
MluCI	AATT	3 cut(s)	113, 456, 608
MnlI	CCTC	9 cut(s)	56, 156, 202, 318, 339, 397, 415, 578, 614
MroNI	GCCGGC	1 cut(s)	100
MslI	CAYNNNNRTG	1 cut(s)	559
MspI	CCGG	6 cut(s)	60, 76, 101, 140, 376, 399
MspR9I	CCNGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	106, 468
NaeI	GCCGGC	1 cut(s)	102
NciI	CCSGG	1 cut(s)	77
NdeII	GATC	4 cut(s)	40, 72, 270, 511
NgoMIV	GCCGGC	1 cut(s)	100
NlaIII	CATG	3 cut(s)	20, 193, 324
NlaIV	GGNNCC	2 cut(s)	74, 513
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	612
PdiI	GCCGGC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	365, 435
PfoI	TCCNGGA	1 cut(s)	75
PkrI	GCNGC	7 cut(s)	51, 88, 153, 257, 357, 470, 602
PspEI	GGTNACC	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	74, 513
PspPI	GGNCC	1 cut(s)	137
PsuI	RGATCY	2 cut(s)	72, 511
RsaI	GTAC	2 cut(s)	25, 541
RsaNI	GTAC	2 cut(s)	24, 540
RseI	CAYNNNNRTG	1 cut(s)	559
SatI	GCNGC	7 cut(s)	50, 87, 152, 256, 356, 469, 601
Sau3AI	GATC	4 cut(s)	40, 72, 270, 511
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	77
SfaNI	GCATC	1 cut(s)	138
SfuI	TTCGAA	1 cut(s)	612
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	559
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
Sse9I	AATT	3 cut(s)	113, 456, 608
SsiI	CCGC	4 cut(s)	52, 355, 412, 601
SspMI	CTAG	5 cut(s)	125, 155, 369, 426, 649
StyD4I	CCNGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	173
TaqI	TCGA	2 cut(s)	473, 612
TasI	AATT	3 cut(s)	113, 456, 608
TatI	WGTACW	1 cut(s)	23
TauI	GCSGC	2 cut(s)	358, 603
TfiI	GAWTC	2 cut(s)	365, 435
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	5 cut(s)	49, 86, 151, 255, 468
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	309, 533
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	1 cut(s)	608
XspI	CTAG	5 cut(s)	125, 155, 369, 426, 649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.