RchiOBHm_Chr5g0046441

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017004
Physical Location & Seq
Forward (+)
42476256 .. 42477582
1327 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32443

Sequence Viewer

Length: 927 bp
ATGAAAATACCTAGCGCTCTGCTAGGGTTGGGAGAGCACCGCTCTTGGCCTCTCTATACCTTACTCCATCAACGATGGAGCAAAATTCCGGCGTCGTTCTCGGCGTCGATACCTTGGCGCACGGCTCTTACCATGTCGCTTGATAGGTTGTGGTTATTAATCTTGCTGGCGACAATCTCTTTTTCTCATACGCTATTTGAACATGCCGGTTCTTTTTTGAGGATGGAAGCGGCTGCGATGTATACCTGGACTGGGATGGCACCGAGAGTTCGTCATCTTCGTCCAATCCGAGCTCGACTGAAATTGGAGGGAAGTGGTTCAGATCTGGTAGGGTTGTGGCAGAAGTTGGTGGCTCGATTTTGGCCTGTGGCAATTTCTTCCCTTCAGACCATTTCTGATCGTGTCTCTGTTCAATGGGGAGATGCAATGTTGGCGAATGACCCTGAAGCTGTTAAGGTTCGCATTTGGGATCTGGGAGACTCTTTTTGGGCCCTACATTTATCTGCATGTTGGAATTGCTTCTTTGGTTACTTAGGTAGAAGATTGCCCTCTATTCAGCGCATTATTTTGCGTGGAGTAGGCAAGGTCGGTCAGACTACCAGCGGTTACCTTGATAGAAGGTTACCCTCTATTCGACGTATTTATTTGCGTGGAACTATGGTTGACCGTACTATTGGTACCGTTTTACATAGCCCGGACTCTGTCTGGTGCCTCATCAAATGCTTAATTGCATCCCTTCGTACACTTGCAAGTTTCTACATCTATATGTTGTTTTTTTTCTTATGGTTATTATTAATAAAATGGTTGATTATTACTCTCAAAAAAAAAAAAACTTCTTTAATTACTGATGAAGGTCTCTCTATCCTAGTGATCAGAGTCAATGTGCATGATGTTGTTTGTATTAATCTTTATGACTTGTACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

35.29

Weight (kDa)

10.13

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 677
AccB1I GGYRCC 3 cut(s) 259, 677, 708
AccBSI CCGCTC 1 cut(s) 42
AccI GTMKAC 1 cut(s) 242
AciI CCGC 3 cut(s) 40, 230, 603
AclWI GGATC 1 cut(s) 477
AcsI RAATTY 1 cut(s) 84
AcuI CTGAAG 2 cut(s) 368, 465
AcyI GRCGYC 2 cut(s) 92, 104
AfaI GTAC 4 cut(s) 670, 679, 742, 920
AfeI AGCGCT 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 2 cut(s) 200, 413
AjnI CCWGG 1 cut(s) 245
AluBI AGCT 2 cut(s) 293, 449
AluI AGCT 2 cut(s) 293, 449
Alw21I GWGCWC 2 cut(s) 39, 295
Alw26I GTCTC 3 cut(s) 409, 471, 860
AlwI GGATC 1 cut(s) 477
Aor51HI AGCGCT 1 cut(s) 16
AoxI GGCC 3 cut(s) 47, 362, 489
ApaI GGGCCC 1 cut(s) 493
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 84
AseI ATTAAT 3 cut(s) 158, 794, 903
Asp700I GAANNNNTTC 2 cut(s) 316, 518
Asp718I GGTACC 1 cut(s) 677
AspLEI GCGC 3 cut(s) 17, 120, 561
AspS9I GGNCC 2 cut(s) 489, 490
AsuC2I CCSGG 1 cut(s) 695
BaeGI GKGCMC 1 cut(s) 493
BanI GGYRCC 3 cut(s) 259, 677, 708
BanII GRGCYC 2 cut(s) 295, 493
Bbv12I GWGCWC 2 cut(s) 39, 295
BbvI GCAGC 1 cut(s) 220
BccI CCATC 4 cut(s) 69, 75, 217, 250
BceAI ACGGC 1 cut(s) 138
BciT130I CCWGG 1 cut(s) 247
BclI TGATCA 1 cut(s) 870
BcnI CCSGG 1 cut(s) 695
BcoDI GTCTC 3 cut(s) 409, 471, 860
BfaI CTAG 3 cut(s) 12, 23, 866
BfoI RGCGCY 1 cut(s) 18
BglII AGATCT 1 cut(s) 322
BisI GCNGC 2 cut(s) 231, 234
BlsI GCNGC 2 cut(s) 232, 235
Bme1390I CCNGG 2 cut(s) 247, 695
BmgT120I GGNCC 2 cut(s) 489, 490
BmiI GGNNCC 4 cut(s) 261, 491, 679, 710
BmrFI CCNGG 2 cut(s) 247, 695
BmrI ACTGGG 1 cut(s) 261
BmsI GCATC 2 cut(s) 412, 740
BmuI ACTGGG 1 cut(s) 261
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpuMI CCSGG 1 cut(s) 695
BsaHI GRCGYC 2 cut(s) 92, 104
BsaI GGTCTC 1 cut(s) 860
BsaJI CCNNGG 1 cut(s) 113
BsaXI ACNNNNNCTCC 1 cut(s) 905
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 432
BseBI CCWGG 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 3 cut(s) 228, 261, 731
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMI GCAATG 1 cut(s) 432
BseNI ACTGG 1 cut(s) 256
BseSI GKGCMC 1 cut(s) 493
BseXI GCAGC 1 cut(s) 220
BshFI GGCC 3 cut(s) 49, 364, 491
BshNI GGYRCC 3 cut(s) 259, 677, 708
BsiHKAI GWGCWC 2 cut(s) 39, 295
BsiSI CCGG 3 cut(s) 89, 207, 695
BslI CCNNNNNNNGG 1 cut(s) 252
BsmAI GTCTC 3 cut(s) 409, 471, 860
BsnI GGCC 3 cut(s) 49, 364, 491
Bso31I GGTCTC 1 cut(s) 860
Bsp120I GGGCCC 1 cut(s) 489
Bsp1286I GDGCHC 3 cut(s) 39, 295, 493
Bsp143I GATC 4 cut(s) 322, 397, 469, 870
BspACI CCGC 3 cut(s) 40, 230, 603
BspANI GGCC 3 cut(s) 49, 364, 491
BspLI GGNNCC 4 cut(s) 261, 491, 679, 710
BspPI GGATC 1 cut(s) 477
BspT107I GGYRCC 3 cut(s) 259, 677, 708
BspTNI GGTCTC 1 cut(s) 860
BsrBI CCGCTC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 432
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 1 cut(s) 256
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 4 cut(s) 322, 397, 469, 870
BssNAI GTATAC 1 cut(s) 243
BssNI GRCGYC 2 cut(s) 92, 104
BssT1I CCWWGG 1 cut(s) 113
Bst1107I GTATAC 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 247
Bst4CI ACNGT 2 cut(s) 668, 682
BstACI GRCGYC 2 cut(s) 92, 104
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 532
BstEII GGTNACC 2 cut(s) 605, 621
BstF5I GGATG 3 cut(s) 228, 261, 731
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 3 cut(s) 17, 120, 561
BstKTI GATC 4 cut(s) 325, 400, 472, 873
BstMAI GTCTC 3 cut(s) 409, 471, 860
BstMBI GATC 4 cut(s) 322, 397, 469, 870
BstMWI GCNNNNNNNGC 1 cut(s) 431
BstNI CCWGG 1 cut(s) 247
BstNSI RCATGY 2 cut(s) 206, 510
BstPI GGTNACC 2 cut(s) 605, 621
BstSCI CCNGG 2 cut(s) 245, 693
BstSLI GKGCMC 1 cut(s) 493
BstV1I GCAGC 1 cut(s) 220
BstX2I RGATCY 2 cut(s) 322, 469
BstYI RGATCY 2 cut(s) 322, 469
BstZ17I GTATAC 1 cut(s) 243
BsuRI GGCC 3 cut(s) 49, 364, 491
BtgZI GCGATG 1 cut(s) 251
BtsCI GGATG 3 cut(s) 228, 261, 731
Cac8I GCNNGC 1 cut(s) 168
CfoI GCGC 3 cut(s) 17, 120, 561
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 2 cut(s) 489, 490
CseI GACGC 2 cut(s) 81, 93
Csp6I GTAC 4 cut(s) 669, 678, 741, 919
CviAII CATG 4 cut(s) 133, 203, 507, 887
CviJI RGCY 9 cut(s) 49, 125, 233, 293, 353, 364, 449, 491, 693
CviKI_1 RGCY 9 cut(s) 49, 125, 233, 293, 353, 364, 449, 491, 693
CviQI GTAC 4 cut(s) 669, 678, 741, 919
DdeI CTNAG 1 cut(s) 532
DpnI GATC 4 cut(s) 324, 399, 471, 872
DpnII GATC 4 cut(s) 322, 397, 469, 870
Ecl136II GAGCTC 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 113
Eco24I GRGCYC 2 cut(s) 295, 493
Eco31I GGTCTC 1 cut(s) 860
Eco47III AGCGCT 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 293
Eco57I CTGAAG 2 cut(s) 368, 465
Eco91I GGTNACC 2 cut(s) 605, 621
EcoICRI GAGCTC 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 490
EcoO65I GGTNACC 2 cut(s) 605, 621
EcoRII CCWGG 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 113
EcoT38I GRGCYC 2 cut(s) 295, 493
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 4 cut(s) 136, 206, 510, 890
FatI CATG 4 cut(s) 132, 202, 506, 886
FbaI TGATCA 1 cut(s) 870
FblI GTMKAC 1 cut(s) 242
Fnu4HI GCNGC 2 cut(s) 231, 234
FokI GGATG 3 cut(s) 235, 268, 718
FriOI GRGCYC 2 cut(s) 295, 493
Fsp4HI GCNGC 2 cut(s) 231, 234
FspBI CTAG 3 cut(s) 12, 23, 866
GlaI GCGC 3 cut(s) 16, 119, 560
GluI GCNGC 2 cut(s) 231, 234
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 3 cut(s) 49, 364, 491
HapII CCGG 3 cut(s) 89, 207, 695
HgaI GACGC 2 cut(s) 81, 93
HhaI GCGC 3 cut(s) 17, 120, 561
Hin1I GRCGYC 2 cut(s) 92, 104
Hin1II CATG 4 cut(s) 136, 206, 510, 890
Hin6I GCGC 3 cut(s) 15, 118, 559
HinP1I GCGC 3 cut(s) 15, 118, 559
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HinfI GANTC 3 cut(s) 479, 698, 876
HpaII CCGG 3 cut(s) 89, 207, 695
Hpy166II GTNNAC 3 cut(s) 243, 664, 743
Hpy188I TCNGA 6 cut(s) 290, 322, 387, 397, 594, 875
Hpy8I GTNNAC 3 cut(s) 243, 664, 743
Hpy99I CGWCG 3 cut(s) 97, 109, 639
HpyAV CCTTC 4 cut(s) 392, 612, 746, 845
HpyCH4III ACNGT 2 cut(s) 668, 682
HpyCH4IV ACGT 1 cut(s) 637
HpyCH4V TGCA 5 cut(s) 425, 506, 731, 749, 886
HpyF10VI GCNNNNNNNGC 1 cut(s) 431
HpyF3I CTNAG 1 cut(s) 532
HpySE526I ACGT 1 cut(s) 637
Hsp92I GRCGYC 2 cut(s) 92, 104
Hsp92II CATG 4 cut(s) 136, 206, 510, 890
HspAI GCGC 3 cut(s) 15, 118, 559
KpnI GGTACC 1 cut(s) 681
Ksp22I TGATCA 1 cut(s) 870
Kzo9I GATC 4 cut(s) 322, 397, 469, 870
LmnI GCTCC 1 cut(s) 78
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 2 cut(s) 412, 740
MaeI CTAG 3 cut(s) 12, 23, 866
MaeII ACGT 1 cut(s) 637
MaeIII GTNAC 3 cut(s) 527, 605, 621
MalI GATC 4 cut(s) 324, 399, 471, 872
MbiI CCGCTC 1 cut(s) 42
MboI GATC 4 cut(s) 322, 397, 469, 870
MboII GAAGA 3 cut(s) 269, 369, 552
MflI RGATCY 2 cut(s) 322, 469
MhlI GDGCHC 3 cut(s) 39, 295, 493
MluCI AATT 6 cut(s) 84, 302, 372, 514, 726, 840
MlyI GAGTC 3 cut(s) 473, 692, 885
MmeI TCCRAC 1 cut(s) 491
MnlI CCTC 6 cut(s) 60, 213, 301, 559, 637, 722
MroXI GAANNNNTTC 2 cut(s) 316, 518
MseI TTAA 6 cut(s) 158, 453, 725, 794, 839, 903
MslI CAYNNNNRTG 1 cut(s) 764
MspA1I CMGCKG 1 cut(s) 603
MspI CCGG 3 cut(s) 89, 207, 695
MspR9I CCNGG 2 cut(s) 247, 695
MvaI CCWGG 1 cut(s) 247
MwoI GCNNNNNNNGC 1 cut(s) 431
NciI CCSGG 1 cut(s) 695
NdeII GATC 4 cut(s) 322, 397, 469, 870
NlaIII CATG 4 cut(s) 136, 206, 510, 890
NlaIV GGNNCC 4 cut(s) 261, 491, 679, 710
NmeAIII GCCGAG 1 cut(s) 80
NspI RCATGY 2 cut(s) 206, 510
PcsI WCGNNNNNNNCGW 3 cut(s) 101, 277, 286
PdmI GAANNNNTTC 2 cut(s) 316, 518
PflFI GACNNNGTC 1 cut(s) 701
PkrI GCNGC 2 cut(s) 232, 235
PleI GAGTC 3 cut(s) 473, 692, 884
PpsI GAGTC 3 cut(s) 473, 692, 884
PshBI ATTAAT 3 cut(s) 158, 794, 903
Psp124BI GAGCTC 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 245
PspEI GGTNACC 2 cut(s) 605, 621
PspGI CCWGG 1 cut(s) 245
PspN4I GGNNCC 4 cut(s) 261, 491, 679, 710
PspOMI GGGCCC 1 cut(s) 489
PspPI GGNCC 2 cut(s) 489, 490
PsuI RGATCY 2 cut(s) 322, 469
PsyI GACNNNGTC 1 cut(s) 701
RsaI GTAC 4 cut(s) 670, 679, 742, 920
RsaNI GTAC 4 cut(s) 669, 678, 741, 919
RseI CAYNNNNRTG 1 cut(s) 764
SacI GAGCTC 1 cut(s) 295
SaqAI TTAA 6 cut(s) 158, 453, 725, 794, 839, 903
SatI GCNGC 2 cut(s) 231, 234
Sau3AI GATC 4 cut(s) 322, 397, 469, 870
Sau96I GGNCC 2 cut(s) 489, 490
SchI GAGTC 3 cut(s) 473, 692, 885
ScrFI CCNGG 2 cut(s) 247, 695
SduI GDGCHC 3 cut(s) 39, 295, 493
SfaNI GCATC 2 cut(s) 412, 740
SmiMI CAYNNNNRTG 1 cut(s) 764
Sse9I AATT 6 cut(s) 84, 302, 372, 514, 726, 840
SsiI CCGC 3 cut(s) 40, 230, 603
SspMI CTAG 3 cut(s) 12, 23, 866
SstI GAGCTC 1 cut(s) 295
StyD4I CCNGG 2 cut(s) 245, 693
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 2 cut(s) 668, 682
TaiI ACGT 1 cut(s) 640
TaqI TCGA 4 cut(s) 107, 295, 355, 634
TaqII GACCGA 1 cut(s) 578
TasI AATT 6 cut(s) 84, 302, 372, 514, 726, 840
TatI WGTACW 1 cut(s) 918
TauI GCSGC 1 cut(s) 233
Tru1I TTAA 6 cut(s) 158, 453, 725, 794, 839, 903
Tru9I TTAA 6 cut(s) 158, 453, 725, 794, 839, 903
TseI GCWGC 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 17, 864
Tth111I GACNNNGTC 1 cut(s) 701
VspI ATTAAT 3 cut(s) 158, 794, 903
XapI RAATTY 1 cut(s) 84
XceI RCATGY 2 cut(s) 206, 510
XmiI GTMKAC 1 cut(s) 242
XmnI GAANNNNTTC 2 cut(s) 316, 518
XspI CTAG 3 cut(s) 12, 23, 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.