Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0420781 RchiOBHm_Chr5g0012511 RchiOBHm_Chr5g0024641 RchiOBHm_Chr5g0046441 |
| rosa_multiflora | Rmu_sc0010408.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00008120 Rroxscaffold_1G00020230 |
| rosa_samantha | Rh1BG386800 Rh2BG593700 Rh5AG166900 Rh5BG498600 Rh5CG164900 Rh6AG268500 Rh6BG104700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 198 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 65 |
| Acc36I | ACCTGC | 1 cut(s) | 291 |
| AccII | CGCG | 1 cut(s) | 15 |
| AciI | CCGC | 1 cut(s) | 43 |
| AcoI | YGGCCR | 1 cut(s) | 98 |
| AcsI | RAATTY | 2 cut(s) | 109, 214 |
| AfaI | GTAC | 1 cut(s) | 281 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 46, 343 |
| AgsI | TTSAA | 2 cut(s) | 256, 270 |
| AjnI | CCWGG | 1 cut(s) | 341 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 144, 176 |
| AluBI | AGCT | 1 cut(s) | 11 |
| AluI | AGCT | 1 cut(s) | 11 |
| Alw26I | GTCTC | 2 cut(s) | 22, 267 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 283 |
| AoxI | GGCC | 1 cut(s) | 98 |
| ApoI | RAATTY | 2 cut(s) | 109, 214 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 361 |
| BalI | TGGCCA | 1 cut(s) | 100 |
| BbsI | GAAGAC | 1 cut(s) | 191 |
| BccI | CCATC | 2 cut(s) | 29, 90 |
| BciT130I | CCWGG | 1 cut(s) | 343 |
| BcoDI | GTCTC | 2 cut(s) | 22, 267 |
| BfmI | CTRYAG | 1 cut(s) | 368 |
| BfuAI | ACCTGC | 1 cut(s) | 291 |
| Bme1390I | CCNGG | 1 cut(s) | 343 |
| BmrFI | CCNGG | 1 cut(s) | 343 |
| BpiI | GAAGAC | 1 cut(s) | 191 |
| BpmI | CTGGAG | 1 cut(s) | 320 |
| BsaI | GGTCTC | 1 cut(s) | 267 |
| BsaJI | CCNNGG | 1 cut(s) | 342 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 46, 343 |
| Bse1I | ACTGG | 2 cut(s) | 277, 337 |
| BseBI | CCWGG | 1 cut(s) | 343 |
| BseDI | CCNNGG | 1 cut(s) | 342 |
| BseGI | GGATG | 3 cut(s) | 76, 101, 145 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 46, 343 |
| BseNI | ACTGG | 2 cut(s) | 277, 337 |
| Bsh1236I | CGCG | 1 cut(s) | 15 |
| BshFI | GGCC | 1 cut(s) | 100 |
| BslFI | GGGAC | 2 cut(s) | 71, 241 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 46, 343 |
| BsmAI | GTCTC | 2 cut(s) | 22, 267 |
| BsmBI | CGTCTC | 1 cut(s) | 22 |
| BsmFI | GGGAC | 2 cut(s) | 71, 241 |
| BsnI | GGCC | 1 cut(s) | 100 |
| Bso31I | GGTCTC | 1 cut(s) | 267 |
| BspACI | CCGC | 1 cut(s) | 43 |
| BspANI | GGCC | 1 cut(s) | 100 |
| BspFNI | CGCG | 1 cut(s) | 15 |
| BspMI | ACCTGC | 1 cut(s) | 291 |
| BspTNI | GGTCTC | 1 cut(s) | 267 |
| BsrI | ACTGG | 2 cut(s) | 277, 337 |
| BssECI | CCNNGG | 1 cut(s) | 342 |
| Bst2UI | CCWGG | 1 cut(s) | 343 |
| Bst4CI | ACNGT | 2 cut(s) | 266, 298 |
| BstC8I | GCNNGC | 1 cut(s) | 13 |
| BstDEI | CTNAG | 1 cut(s) | 131 |
| BstF5I | GGATG | 3 cut(s) | 76, 101, 145 |
| BstFNI | CGCG | 1 cut(s) | 15 |
| BstMAI | GTCTC | 2 cut(s) | 22, 267 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 316 |
| BstNI | CCWGG | 1 cut(s) | 343 |
| BstSCI | CCNGG | 1 cut(s) | 341 |
| BstSFI | CTRYAG | 1 cut(s) | 368 |
| BstUI | CGCG | 1 cut(s) | 15 |
| BstV2I | GAAGAC | 1 cut(s) | 191 |
| BsuRI | GGCC | 1 cut(s) | 100 |
| BtsCI | GGATG | 3 cut(s) | 76, 101, 145 |
| BveI | ACCTGC | 1 cut(s) | 291 |
| Cac8I | GCNNGC | 1 cut(s) | 13 |
| CaiI | CAGNNNCTG | 1 cut(s) | 283 |
| CseI | GACGC | 1 cut(s) | 4 |
| Csp6I | GTAC | 1 cut(s) | 280 |
| CviJI | RGCY | 4 cut(s) | 11, 100, 156, 319 |
| CviKI_1 | RGCY | 4 cut(s) | 11, 100, 156, 319 |
| CviQI | GTAC | 1 cut(s) | 280 |
| DdeI | CTNAG | 1 cut(s) | 131 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 65 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 65 |
| EaeI | YGGCCR | 1 cut(s) | 98 |
| Eco31I | GGTCTC | 1 cut(s) | 267 |
| EcoRII | CCWGG | 1 cut(s) | 341 |
| Esp3I | CGTCTC | 1 cut(s) | 22 |
| FaiI | YATR | 5 cut(s) | 83, 198, 204, 262, 327 |
| FaqI | GGGAC | 2 cut(s) | 71, 241 |
| FokI | GGATG | 3 cut(s) | 63, 108, 152 |
| GsuI | CTGGAG | 1 cut(s) | 320 |
| HaeIII | GGCC | 1 cut(s) | 100 |
| HgaI | GACGC | 1 cut(s) | 4 |
| HinfI | GANTC | 2 cut(s) | 66, 124 |
| Hpy188I | TCNGA | 2 cut(s) | 292, 380 |
| Hpy188III | TCNNGA | 2 cut(s) | 56, 270 |
| HpyAV | CCTTC | 2 cut(s) | 80, 367 |
| HpyCH4III | ACNGT | 2 cut(s) | 266, 298 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 316 |
| HpyF3I | CTNAG | 1 cut(s) | 131 |
| LmnI | GCTCC | 1 cut(s) | 164 |
| LpnPI | CCDG | 9 cut(s) | 153, 170, 226, 290, 296, 328, 333, 350, 355 |
| MboII | GAAGA | 4 cut(s) | 111, 118, 196, 361 |
| MlsI | TGGCCA | 1 cut(s) | 100 |
| MluCI | AATT | 4 cut(s) | 109, 193, 214, 301 |
| MluNI | TGGCCA | 1 cut(s) | 100 |
| MlyI | GAGTC | 1 cut(s) | 75 |
| MnlI | CCTC | 2 cut(s) | 47, 138 |
| Mox20I | TGGCCA | 1 cut(s) | 100 |
| MroXI | GAANNNNTTC | 1 cut(s) | 361 |
| MscI | TGGCCA | 1 cut(s) | 100 |
| MseI | TTAA | 2 cut(s) | 177, 300 |
| Msp20I | TGGCCA | 1 cut(s) | 100 |
| MspR9I | CCNGG | 1 cut(s) | 343 |
| MvaI | CCWGG | 1 cut(s) | 343 |
| MvnI | CGCG | 1 cut(s) | 15 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 316 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 61 |
| PdmI | GAANNNNTTC | 1 cut(s) | 361 |
| PfeI | GAWTC | 1 cut(s) | 124 |
| PleI | GAGTC | 1 cut(s) | 74 |
| PpsI | GAGTC | 1 cut(s) | 74 |
| PsiI | TTATAA | 1 cut(s) | 198 |
| Psp6I | CCWGG | 1 cut(s) | 341 |
| PspGI | CCWGG | 1 cut(s) | 341 |
| PstNI | CAGNNNCTG | 1 cut(s) | 283 |
| RsaI | GTAC | 1 cut(s) | 281 |
| RsaNI | GTAC | 1 cut(s) | 280 |
| SaqAI | TTAA | 2 cut(s) | 177, 300 |
| SchI | GAGTC | 1 cut(s) | 75 |
| ScrFI | CCNGG | 1 cut(s) | 343 |
| SetI | ASST | 3 cut(s) | 13, 285, 378 |
| SfcI | CTRYAG | 1 cut(s) | 368 |
| Sse9I | AATT | 4 cut(s) | 109, 193, 214, 301 |
| SsiI | CCGC | 1 cut(s) | 43 |
| StyD4I | CCNGG | 1 cut(s) | 341 |
| TaaI | ACNGT | 2 cut(s) | 266, 298 |
| TaqI | TCGA | 1 cut(s) | 122 |
| TasI | AATT | 4 cut(s) | 109, 193, 214, 301 |
| TfiI | GAWTC | 1 cut(s) | 124 |
| Tru1I | TTAA | 2 cut(s) | 177, 300 |
| Tru9I | TTAA | 2 cut(s) | 177, 300 |
| TspDTI | ATGAA | 2 cut(s) | 62, 207 |
| XapI | RAATTY | 2 cut(s) | 109, 214 |
| XmnI | GAANNNNTTC | 1 cut(s) | 361 |