RchiOBHm_Chr4g0424931

Cell division control protein 24, OB domain 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014037
Physical Location & Seq
Forward (+)
50503114 .. 50506121
3008 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39417

Sequence Viewer

Length: 1203 bp
ATGCCGGAATGCGTGAAGCAATTGCGAAAGAAGAATAAGCGAAGGAAGCTTTCGAACACTGTGACTATTGATTCCATTTACGAGAATAATTTCTTGTCCTTGAATAGTGTGTTGGAAGCGGTGATTGTCGACGCTTTTGTTCTCCCTGGTAGTTTGTTACTTTCGAGGGCACCAACATTTATATGCTTTCCCTGGGGGATTTTTGGAGCACCAAATACCATTGATCTTTATGATGTATTGGATATGAGTCGGTACTATGACTTGATAAATCCTCCTAATGGGATTCTCAAGAAAGGAAGGCAGATCTTTCTCACGGGGTGCCATCTTCATCCTGCTGCTGGAGGAGGGTCTCGTTGTCCTCGACTGTTGCCAACAGAATATCTAGTGATATTGTTGGATGAGGATGATGATGGTGATGCAATGCTGCTAGGAGGTCAGTTTTGTTCAGATTCATTCTCTTCAATTTCTCTTGATGCATTCAGTAAAAACGTTTCTCATTCATTGTATGCAAGAATTGAGCTCATTGCCCCACTTGAAGTTCGAGGAAAGTTTGGAACTTTACAAAGGAAACAAATCACTCTTGTAGATGATGATGGTGCTAAGTTGCAATTTCTGCTGTGGGGTGACCAGGTTGTCCTGGCAAATCTTTTCAGTGTGGGAAGTATGCTTGCACTGGATAAACCATATATTGCAAGTTCCGCAGACAGTGCTGCTGAAACAAGTGCTGAAGTTTCCCTTGAATTTGGTAGTGCAACACAATTGTTTTTGGTGCCTTTTGTTCAACACAAGGAACAAGTATGTGTATCACTGACACCAAGCCGCCATCAAGGATCAAGACTGCTAAGCACATTACATCCCAGTCAGAAAATCGTTATTATTCTCGTTCAATCATTCTCACTGTGTGCTTATCTGCTTGATATGTGGCCAAGTTCATGTGAAATTAACTGCTTGAATGCTTTGTGCCTCAATCTCTTCTTAGCATTGCTTAGTCTCCTAATCAAATTCATTATTAACATATCTCACCTGTGTGAAGTTTTGCAGTCCTGCATTACCGATCTTCGTGACAAGATGACCGGCGTCAGCCTTTATGGTGTTGTTACAAGTGTCATCAAAGAAAGATGTACCACAGAAGCTATCTTCTCATGGCGAATTGAAGATACCACTGGAACAATTTGGACTAAATTACATTTTGTGAAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC24_OB1 CDC24_OB2 CDC24_OB3

Protein Analysis

400

Amino Acids

44.39

Weight (kDa)

6.08

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC24_OB1 PF17246 6 - 51 2.7e-13 Cell division control protein 24, OB domain 1
CDC24_OB2 PF17245 83 - 197 4.6e-36 Cell division control protein 24, OB domain 2
CDC24_OB3 PF17244 352 - 398 6.3e-10 Cell division control protein 24, OB domain 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014037)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17030
fragaria_vesca FvH4_4g19640
malus_domestica MD13G1155000.v1.1
prunus_persica Prupe.1G118000_v2.0.a1
pyrus_communis pycom13g13180
rosa_chinensis RchiOBHm_Chr4g0424901 RchiOBHm_Chr4g0424931
rosa_laevigata RLG00000007411
rosa_multiflora Rmu_sc0006754.1_g000002 Rmu_ssc0000420.1_g000005
rosa_roxburghii Rroxscaffold_5G00367120
rosa_rugosa Rorug04G0200500
rosa_samantha Rh4AG257900 Rh4BG263300 Rh4CG274300 Rh4DG259000
rosa_wichuraiana Rw4G022260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 632
AccB1I GGYRCC 3 cut(s) 169, 318, 769
AccI GTMKAC 1 cut(s) 129
AciI CCGC 3 cut(s) 119, 699, 820
AclI AACGTT 1 cut(s) 489
AclWI GGATC 1 cut(s) 838
AcoI YGGCCR 1 cut(s) 923
AcsI RAATTY 2 cut(s) 740, 1001
AcuI CTGAAG 1 cut(s) 747
AcyI GRCGYC 1 cut(s) 1077
AdeI CACNNNGTG 2 cut(s) 318, 902
AfaI GTAC 2 cut(s) 254, 1123
AfiI CCNNNNNNNGG 2 cut(s) 278, 338
AgsI TTSAA 8 cut(s) 103, 462, 536, 740, 782, 887, 952, 1154
AjnI CCWGG 4 cut(s) 145, 191, 627, 636
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AleI CACNNNNGTG 1 cut(s) 1026
AluBI AGCT 3 cut(s) 49, 520, 1133
AluI AGCT 3 cut(s) 49, 520, 1133
Alw21I GWGCWC 2 cut(s) 211, 522
Alw26I GTCTC 2 cut(s) 354, 995
AlwI GGATC 1 cut(s) 838
AoxI GGCC 1 cut(s) 923
ApeKI GCWGC 3 cut(s) 335, 424, 710
ApoI RAATTY 2 cut(s) 740, 1001
Asp700I GAANNNNTTC 1 cut(s) 89
AsuHPI GGTGA 4 cut(s) 133, 425, 635, 1013
AsuII TTCGAA 1 cut(s) 53
BaeGI GKGCMC 1 cut(s) 172
BalI TGGCCA 1 cut(s) 925
BanI GGYRCC 3 cut(s) 169, 318, 769
BanII GRGCYC 1 cut(s) 522
Bbv12I GWGCWC 2 cut(s) 211, 522
BbvI GCAGC 3 cut(s) 322, 411, 697
BccI CCATC 4 cut(s) 330, 404, 587, 831
BciT130I CCWGG 4 cut(s) 147, 193, 629, 638
BcoDI GTCTC 2 cut(s) 354, 995
BfaI CTAG 2 cut(s) 383, 428
BglII AGATCT 1 cut(s) 303
BisI GCNGC 4 cut(s) 336, 425, 711, 820
BlpI GCTNAGC 1 cut(s) 842
BlsI GCNGC 4 cut(s) 337, 426, 712, 821
Bme1390I CCNGG 4 cut(s) 147, 193, 629, 638
BmiI GGNNCC 3 cut(s) 171, 320, 771
BmrFI CCNGG 4 cut(s) 147, 193, 629, 638
BmrI ACTGGG 1 cut(s) 852
BmsI GCATC 2 cut(s) 406, 463
BmuI ACTGGG 1 cut(s) 852
BoxI GACNNNNGTC 1 cut(s) 1076
BpmI CTGGAG 1 cut(s) 360
Bpu1102I GCTNAGC 1 cut(s) 842
Bpu14I TTCGAA 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 272
BsaHI GRCGYC 1 cut(s) 1077
BsaI GGTCTC 1 cut(s) 354
BsaJI CCNNGG 3 cut(s) 145, 191, 192
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 338
Bse118I RCCGGY 1 cut(s) 1073
Bse1I ACTGG 3 cut(s) 678, 858, 1168
Bse3DI GCAATG 3 cut(s) 426, 522, 980
BseBI CCWGG 4 cut(s) 147, 193, 629, 638
BseDI CCNNGG 3 cut(s) 145, 191, 192
BseGI GGATG 4 cut(s) 328, 403, 409, 853
BseLI CCNNNNNNNGG 2 cut(s) 278, 338
BseMI GCAATG 3 cut(s) 426, 522, 980
BseNI ACTGG 3 cut(s) 678, 858, 1168
BseRI GAGGAG 1 cut(s) 357
BseSI GKGCMC 1 cut(s) 172
BseXI GCAGC 3 cut(s) 322, 411, 697
BshFI GGCC 1 cut(s) 925
BshNI GGYRCC 3 cut(s) 169, 318, 769
BsiHKAI GWGCWC 2 cut(s) 211, 522
BsiSI CCGG 2 cut(s) 5, 1074
BslI CCNNNNNNNGG 2 cut(s) 278, 338
BsmAI GTCTC 2 cut(s) 354, 995
BsmI GAATGC 3 cut(s) 14, 476, 958
BsnI GGCC 1 cut(s) 925
Bso31I GGTCTC 1 cut(s) 354
Bsp119I TTCGAA 1 cut(s) 53
Bsp1286I GDGCHC 3 cut(s) 172, 211, 522
Bsp143I GATC 4 cut(s) 223, 303, 830, 1054
Bsp1720I GCTNAGC 1 cut(s) 842
BspACI CCGC 3 cut(s) 119, 699, 820
BspANI GGCC 1 cut(s) 925
BspLI GGNNCC 3 cut(s) 171, 320, 771
BspPI GGATC 1 cut(s) 838
BspT104I TTCGAA 1 cut(s) 53
BspT107I GGYRCC 3 cut(s) 169, 318, 769
BspTNI GGTCTC 1 cut(s) 354
BsrDI GCAATG 3 cut(s) 426, 522, 980
BsrFI RCCGGY 1 cut(s) 1073
BsrI ACTGG 3 cut(s) 678, 858, 1168
BssAI RCCGGY 1 cut(s) 1073
BssECI CCNNGG 3 cut(s) 145, 191, 192
BssMI GATC 4 cut(s) 223, 303, 830, 1054
BssNI GRCGYC 1 cut(s) 1077
Bst2UI CCWGG 4 cut(s) 147, 193, 629, 638
Bst4CI ACNGT 4 cut(s) 61, 366, 707, 900
Bst6I CTCTTC 2 cut(s) 463, 977
BstACI GRCGYC 1 cut(s) 1077
BstAPI GCANNNNNTGC 2 cut(s) 613, 707
BstBI TTCGAA 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 669
BstDEI CTNAG 4 cut(s) 600, 842, 976, 986
BstEII GGTNACC 1 cut(s) 623
BstF5I GGATG 4 cut(s) 328, 403, 409, 853
BstKTI GATC 4 cut(s) 226, 306, 833, 1057
BstMAI GTCTC 2 cut(s) 354, 995
BstMBI GATC 4 cut(s) 223, 303, 830, 1054
BstMWI GCNNNNNNNGC 4 cut(s) 46, 613, 698, 707
BstNI CCWGG 4 cut(s) 147, 193, 629, 638
BstPAI GACNNNNGTC 1 cut(s) 1076
BstPI GGTNACC 1 cut(s) 623
BstSCI CCNGG 4 cut(s) 145, 191, 627, 636
BstSLI GKGCMC 1 cut(s) 172
BstV1I GCAGC 3 cut(s) 322, 411, 697
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
BsuRI GGCC 1 cut(s) 925
BtsCI GGATG 4 cut(s) 328, 403, 409, 853
BtsIMutI CAGTG 7 cut(s) 57, 658, 671, 712, 806, 896, 1161
Cac8I GCNNGC 1 cut(s) 669
Cfr10I RCCGGY 1 cut(s) 1073
CseI GACGC 2 cut(s) 140, 1066
CsiI ACCWGGT 1 cut(s) 627
Csp6I GTAC 2 cut(s) 253, 1122
CviAII CATG 2 cut(s) 933, 1143
CviJI RGCY 6 cut(s) 49, 520, 819, 925, 1083, 1133
CviKI_1 RGCY 6 cut(s) 49, 520, 819, 925, 1083, 1133
CviQI GTAC 2 cut(s) 253, 1122
DdeI CTNAG 4 cut(s) 600, 842, 976, 986
DpnI GATC 4 cut(s) 225, 305, 832, 1056
DpnII GATC 4 cut(s) 223, 303, 830, 1054
DraIII CACNNNGTG 2 cut(s) 318, 902
DrdI GACNNNNNNGTC 1 cut(s) 632
DseDI GACNNNNNNGTC 1 cut(s) 632
EaeI YGGCCR 1 cut(s) 923
Eam1104I CTCTTC 2 cut(s) 463, 977
EarI CTCTTC 2 cut(s) 463, 977
Ecl136II GAGCTC 1 cut(s) 520
Eco24I GRGCYC 1 cut(s) 522
Eco31I GGTCTC 1 cut(s) 354
Eco53kI GAGCTC 1 cut(s) 520
Eco57I CTGAAG 1 cut(s) 747
Eco91I GGTNACC 1 cut(s) 623
EcoICRI GAGCTC 1 cut(s) 520
EcoO65I GGTNACC 1 cut(s) 623
EcoRII CCWGG 4 cut(s) 145, 191, 627, 636
EcoT22I ATGCAT 1 cut(s) 478
EcoT38I GRGCYC 1 cut(s) 522
FaeI CATG 2 cut(s) 936, 1146
FalI AAGNNNNNCTT 2 cut(s) 720, 752
FatI CATG 2 cut(s) 932, 1142
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 4 cut(s) 336, 425, 711, 820
FokI GGATG 4 cut(s) 315, 410, 416, 840
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 4 cut(s) 336, 425, 711, 820
FspBI CTAG 2 cut(s) 383, 428
GluI GCNGC 4 cut(s) 336, 425, 711, 820
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 1 cut(s) 925
HapII CCGG 2 cut(s) 5, 1074
HgaI GACGC 2 cut(s) 140, 1066
Hin1I GRCGYC 1 cut(s) 1077
Hin1II CATG 2 cut(s) 936, 1146
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 4 cut(s) 71, 247, 283, 449
HpaII CCGG 2 cut(s) 5, 1074
HphI GGTGA 4 cut(s) 133, 425, 635, 1013
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 448, 864
Hpy188III TCNNGA 4 cut(s) 289, 470, 834, 1061
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 2 cut(s) 36, 291
HpyCH4III ACNGT 4 cut(s) 61, 366, 707, 900
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 9 cut(s) 419, 476, 509, 607, 671, 692, 752, 1039, 1047
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 613, 698, 707
HpyF3I CTNAG 4 cut(s) 600, 842, 976, 986
HpySE526I ACGT 1 cut(s) 489
Hsp92I GRCGYC 1 cut(s) 1077
Hsp92II CATG 2 cut(s) 936, 1146
Kzo9I GATC 4 cut(s) 223, 303, 830, 1054
LmnI GCTCC 1 cut(s) 206
Lsp1109I GCAGC 3 cut(s) 322, 411, 697
LweI GCATC 2 cut(s) 406, 463
MabI ACCWGGT 1 cut(s) 627
MaeI CTAG 2 cut(s) 383, 428
MaeII ACGT 1 cut(s) 489
MaeIII GTNAC 5 cut(s) 61, 156, 623, 1061, 1096
MalI GATC 4 cut(s) 225, 305, 832, 1056
MboI GATC 4 cut(s) 223, 303, 830, 1054
MboII GAAGA 7 cut(s) 43, 317, 450, 964, 1049, 1129, 1166
MfeI CAATTG 2 cut(s) 20, 758
MflI RGATCY 1 cut(s) 303
MhlI GDGCHC 3 cut(s) 172, 211, 522
MlsI TGGCCA 1 cut(s) 925
MluNI TGGCCA 1 cut(s) 925
MlyI GAGTC 1 cut(s) 256
MmeI TCCRAC 2 cut(s) 93, 375
MnlI CCTC 9 cut(s) 159, 282, 335, 338, 369, 394, 425, 536, 974
Mox20I TGGCCA 1 cut(s) 925
Mph1103I ATGCAT 1 cut(s) 478
MroXI GAANNNNTTC 1 cut(s) 89
MscI TGGCCA 1 cut(s) 925
MseI TTAA 2 cut(s) 942, 1011
MslI CAYNNNNRTG 2 cut(s) 181, 1026
Msp20I TGGCCA 1 cut(s) 925
MspI CCGG 2 cut(s) 5, 1074
MspR9I CCNGG 4 cut(s) 147, 193, 629, 638
MunI CAATTG 2 cut(s) 20, 758
Mva1269I GAATGC 3 cut(s) 14, 476, 958
MvaI CCWGG 4 cut(s) 147, 193, 629, 638
MwoI GCNNNNNNNGC 4 cut(s) 46, 613, 698, 707
NdeII GATC 4 cut(s) 223, 303, 830, 1054
NlaIII CATG 2 cut(s) 936, 1146
NlaIV GGNNCC 3 cut(s) 171, 320, 771
NmuCI GTSAC 3 cut(s) 61, 623, 1061
NsiI ATGCAT 1 cut(s) 478
NspV TTCGAA 1 cut(s) 53
OliI CACNNNNGTG 1 cut(s) 1026
PasI CCCWGGG 1 cut(s) 192
PcsI WCGNNNNNNNCGW 1 cut(s) 358
PctI GAATGC 3 cut(s) 14, 476, 958
PdmI GAANNNNTTC 1 cut(s) 89
PfeI GAWTC 3 cut(s) 71, 283, 449
PkrI GCNGC 4 cut(s) 337, 426, 712, 821
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
PshAI GACNNNNGTC 1 cut(s) 1076
Psp124BI GAGCTC 1 cut(s) 522
Psp1406I AACGTT 1 cut(s) 489
Psp6I CCWGG 4 cut(s) 145, 191, 627, 636
PspEI GGTNACC 1 cut(s) 623
PspGI CCWGG 4 cut(s) 145, 191, 627, 636
PspN4I GGNNCC 3 cut(s) 171, 320, 771
PsuI RGATCY 1 cut(s) 303
RsaI GTAC 2 cut(s) 254, 1123
RsaNI GTAC 2 cut(s) 253, 1122
RseI CAYNNNNRTG 2 cut(s) 181, 1026
SacI GAGCTC 1 cut(s) 522
SalI GTCGAC 1 cut(s) 128
SaqAI TTAA 2 cut(s) 942, 1011
SatI GCNGC 4 cut(s) 336, 425, 711, 820
Sau3AI GATC 4 cut(s) 223, 303, 830, 1054
SchI GAGTC 1 cut(s) 256
ScrFI CCNGG 4 cut(s) 147, 193, 629, 638
SduI GDGCHC 3 cut(s) 172, 211, 522
SetI ASST 7 cut(s) 51, 436, 492, 522, 633, 1026, 1135
SexAI ACCWGGT 1 cut(s) 627
SfaNI GCATC 2 cut(s) 406, 463
SfuI TTCGAA 1 cut(s) 53
SmiMI CAYNNNNRTG 2 cut(s) 181, 1026
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
SsiI CCGC 3 cut(s) 119, 699, 820
SspI AATATT 1 cut(s) 1199
SspMI CTAG 2 cut(s) 383, 428
SstI GAGCTC 1 cut(s) 522
StyD4I CCNGG 4 cut(s) 145, 191, 627, 636
TaaI ACNGT 4 cut(s) 61, 366, 707, 900
TaiI ACGT 1 cut(s) 492
TaqI TCGA 5 cut(s) 53, 129, 164, 361, 541
TauI GCSGC 1 cut(s) 822
TfiI GAWTC 3 cut(s) 71, 283, 449
Tru1I TTAA 2 cut(s) 942, 1011
Tru9I TTAA 2 cut(s) 942, 1011
TscAI CASTG 7 cut(s) 64, 658, 678, 712, 813, 903, 1168
TseFI GTSAC 3 cut(s) 61, 623, 1061
TseI GCWGC 3 cut(s) 335, 424, 710
Tsp45I GTSAC 3 cut(s) 61, 623, 1061
TspDTI ATGAA 5 cut(s) 317, 441, 489, 921, 994
TspRI CASTG 7 cut(s) 64, 658, 678, 712, 813, 903, 1168
XapI RAATTY 2 cut(s) 740, 1001
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 89
XspI CTAG 2 cut(s) 383, 428
Zsp2I ATGCAT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.