Rorug04G0200500

Cell division control protein 24, OB domain 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014037
Physical Location & Seq
Reverse (-)
34821238 .. 34822778
1541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0200500.1

Sequence Viewer

Length: 1116 bp
ATGGAAGGAGTGGACTTGACGTTGCCGAACTCGTTGAAAAGAAGGACCCCTTTCATCCACCAAGAGATAATTCGTGACATACTCTCAAGGCTTCCAGTGAAATCTTTAAAACGATTTGAGTGTGTATGCAAGCCCTGGCAAGCTTTAATCACCAGCATCAACCTAAACAGACCCCGGCTCCTGTACGCCCCTTTGTCAGTCAACCCCAACCCTCTCCTTTCCGTTGATTATGAAGCCCTGAATAATGAGGATGGTGTTGCAATGAAAGAGGTACATTGTCCAGCCGTAGTCGAGCCCGACACAACTTTGATATTCTTGGGTTCGTGCCATGGTCTGGTAGGTCTAGGAATGGATGGGCGTGACGGTCTTGTGTTATGGAACCCATCTACTGGAGATATGAGGGTGCTTCCAAAACCTACTCTTAGGAAGGATGATATGAATTTTCATGGTGTCGGTTATGATCCCTCTACTGAAGACTATAAAGTAATATGTGGATACAGTGATCATCTTAAAACTGTGATTGAGGTCTACTCACTAAAGAGGAATGCATGGAGGACTTATATAGACCTCAAGTGTGTCAATTTAAACTTGCAAGACCTGCAGGGTTGCTATTTAAATGGATCCATACACTGGATCAAGTTTAGCTTTCTGCGGTCTAGCATCATTTCATTTGATTTAGCAGAGAACAGGTTTAAGGAGGCATTGCCATTACCTGACTGTGGACCTGGTGGCAGCCACGAACTTAGCTCCTTGGGAATCGGGACTACCAGAAACTGTCTCTTTGTACATTCTGGACTCGATAAACCCAATCTTAACATATGGGTGATGAAGGAATTTGGGGTCAGGGAATCTTGGACTAGAGTCCTACATATTCCTTCAGCAGTTATAGGTCCAGACCATGGATTTGATGAACACGGGTTGAAACCTCTTTGCATTTTGGACAATGGGGAATTTTTGATGGCTTATGATGAAAAATGCTTGCAATTATATAATCCCAGCACAATGACATTTCGGAGAATTATTCAAGAGGACGATGATAATTCTCCAATCGAAACTGTTACTTACGAGGAGACTCTAGTTTCACTGCCAGTAGCAGAAGTGCTGGAGTTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC24_OB1 CDC24_OB2 CDC24_OB3

Protein Analysis

371

Amino Acids

41.86

Weight (kDa)

5.35

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 22 - 56 8.8e-07 F-box domain
FBA_3 PF08268 92 - 342 4.3e-17 F-box associated beta propeller domain
FBA_1 PF07734 108 - 304 1.3e-24 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014037)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17030
fragaria_vesca FvH4_4g19640
malus_domestica MD13G1155000.v1.1
prunus_persica Prupe.1G118000_v2.0.a1
pyrus_communis pycom13g13180
rosa_chinensis RchiOBHm_Chr4g0424901 RchiOBHm_Chr4g0424931
rosa_laevigata RLG00000007411
rosa_multiflora Rmu_sc0006754.1_g000002 Rmu_ssc0000420.1_g000005
rosa_roxburghii Rroxscaffold_5G00367120
rosa_rugosa Rorug04G0200500
rosa_samantha Rh4AG257900 Rh4BG263300 Rh4CG274300 Rh4DG259000
rosa_wichuraiana Rw4G022260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 606
AccB7I CCANNNNNTGG 4 cut(s) 334, 389, 630, 899
AccI GTMKAC 1 cut(s) 528
AciI CCGC 1 cut(s) 652
AclWI GGATC 4 cut(s) 455, 615, 628, 641
AcsI RAATTY 3 cut(s) 439, 833, 950
AcuI CTGAAG 2 cut(s) 492, 861
AfaI GTAC 3 cut(s) 185, 273, 786
AfiI CCNNNNNNNGG 5 cut(s) 334, 389, 630, 719, 899
AgsI TTSAA 3 cut(s) 37, 922, 1025
AjnI CCWGG 2 cut(s) 134, 724
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AluBI AGCT 3 cut(s) 143, 645, 747
AluI AGCT 3 cut(s) 143, 645, 747
Alw26I GTCTC 2 cut(s) 782, 1064
AlwI GGATC 4 cut(s) 455, 615, 628, 641
AlwNI CAGNNNCTG 1 cut(s) 774
ApeKI GCWGC 1 cut(s) 732
ApoI RAATTY 3 cut(s) 439, 833, 950
ArsI GACNNNNNNTTYG 2 cut(s) 887, 919
AspS9I GGNCC 3 cut(s) 45, 722, 890
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 2 cut(s) 142, 835
AvaII GGWCC 3 cut(s) 45, 722, 890
BamHI GGATCC 1 cut(s) 620
BanII GRGCYC 1 cut(s) 297
BbsI GAAGAC 1 cut(s) 480
BbvI GCAGC 1 cut(s) 744
BccI CCATC 4 cut(s) 245, 347, 391, 952
BceAI ACGGC 1 cut(s) 269
BciT130I CCWGG 2 cut(s) 136, 726
BciVI GTATCC 1 cut(s) 488
BclI TGATCA 1 cut(s) 502
BcnI CCSGG 1 cut(s) 175
BcoDI GTCTC 2 cut(s) 782, 1064
BfaI CTAG 4 cut(s) 344, 657, 858, 1076
BfmI CTRYAG 1 cut(s) 599
BfuAI ACCTGC 1 cut(s) 606
BfuI GTATCC 1 cut(s) 488
BisI GCNGC 1 cut(s) 733
BlsI GCNGC 1 cut(s) 734
Bme1390I CCNGG 3 cut(s) 136, 175, 726
Bme18I GGWCC 3 cut(s) 45, 722, 890
BmgT120I GGNCC 3 cut(s) 45, 722, 890
BmiI GGNNCC 4 cut(s) 47, 179, 380, 622
BmrFI CCNGG 3 cut(s) 136, 175, 726
BmsI GCATC 2 cut(s) 165, 669
BoxI GACNNNNGTC 1 cut(s) 860
BpiI GAAGAC 1 cut(s) 480
BplI GAGNNNNNCTC 2 cut(s) 515, 547
BpmI CTGGAG 1 cut(s) 411
BpuEI CTTGAG 2 cut(s) 70, 554
BpuMI CCSGG 1 cut(s) 175
BsaJI CCNNGG 5 cut(s) 134, 173, 328, 750, 898
BsaXI ACNNNNNCTCC 3 cut(s) 162, 192, 1097
Bsc4I CCNNNNNNNGG 5 cut(s) 334, 389, 630, 719, 899
Bse1I ACTGG 4 cut(s) 95, 394, 635, 1088
Bse3DI GCAATG 2 cut(s) 267, 701
BseBI CCWGG 2 cut(s) 136, 726
BseDI CCNNGG 5 cut(s) 134, 173, 328, 750, 898
BseGI GGATG 4 cut(s) 54, 256, 358, 436
BseLI CCNNNNNNNGG 5 cut(s) 334, 389, 630, 719, 899
BseMI GCAATG 2 cut(s) 267, 701
BseNI ACTGG 4 cut(s) 95, 394, 635, 1088
BseRI GAGGAG 1 cut(s) 1082
BseXI GCAGC 1 cut(s) 744
BseYI CCCAGC 1 cut(s) 995
BsiSI CCGG 1 cut(s) 175
BslFI GGGAC 1 cut(s) 775
BslI CCNNNNNNNGG 5 cut(s) 334, 389, 630, 719, 899
BsmAI GTCTC 2 cut(s) 782, 1064
BsmFI GGGAC 1 cut(s) 775
BsmI GAATGC 1 cut(s) 550
Bsp1286I GDGCHC 1 cut(s) 297
Bsp1407I TGTACA 1 cut(s) 784
Bsp143I GATC 4 cut(s) 460, 502, 620, 633
Bsp19I CCATGG 2 cut(s) 328, 898
BspACI CCGC 1 cut(s) 652
BspLI GGNNCC 4 cut(s) 47, 179, 380, 622
BspMAI CTGCAG 1 cut(s) 603
BspMI ACCTGC 1 cut(s) 606
BspPI GGATC 4 cut(s) 455, 615, 628, 641
BsrDI GCAATG 2 cut(s) 267, 701
BsrGI TGTACA 1 cut(s) 784
BsrI ACTGG 4 cut(s) 95, 394, 635, 1088
BssECI CCNNGG 5 cut(s) 134, 173, 328, 750, 898
BssMI GATC 4 cut(s) 460, 502, 620, 633
BssT1I CCWWGG 3 cut(s) 328, 750, 898
Bst2UI CCWGG 2 cut(s) 136, 726
Bst4CI ACNGT 6 cut(s) 365, 500, 517, 719, 776, 1057
BstAPI GCANNNNNTGC 1 cut(s) 598
BstAUI TGTACA 1 cut(s) 784
BstC8I GCNNGC 3 cut(s) 131, 141, 980
BstDEI CTNAG 2 cut(s) 422, 743
BstDSI CCRYGG 2 cut(s) 328, 898
BstF5I GGATG 4 cut(s) 54, 256, 358, 436
BstKTI GATC 4 cut(s) 463, 505, 623, 636
BstMAI GTCTC 2 cut(s) 782, 1064
BstMBI GATC 4 cut(s) 460, 502, 620, 633
BstMWI GCNNNNNNNGC 1 cut(s) 598
BstNI CCWGG 2 cut(s) 136, 726
BstPAI GACNNNNGTC 1 cut(s) 860
BstSCI CCNGG 3 cut(s) 134, 173, 724
BstSFI CTRYAG 1 cut(s) 599
BstV1I GCAGC 1 cut(s) 744
BstV2I GAAGAC 1 cut(s) 480
BstX2I RGATCY 1 cut(s) 620
BstYI RGATCY 1 cut(s) 620
BsuI GTATCC 1 cut(s) 488
BtgI CCRYGG 2 cut(s) 328, 898
BtsCI GGATG 4 cut(s) 54, 256, 358, 436
BtsI GCAGTG 1 cut(s) 1082
BtsIMutI CAGTG 4 cut(s) 102, 505, 628, 1082
BveI ACCTGC 1 cut(s) 606
Cac8I GCNNGC 3 cut(s) 131, 141, 980
CaiI CAGNNNCTG 1 cut(s) 774
Cfr13I GGNCC 3 cut(s) 45, 722, 890
CsiI ACCWGGT 1 cut(s) 724
Csp6I GTAC 3 cut(s) 184, 272, 785
CviAII CATG 4 cut(s) 329, 446, 549, 899
CviQI GTAC 3 cut(s) 184, 272, 785
DdeI CTNAG 2 cut(s) 422, 743
DpnI GATC 4 cut(s) 462, 504, 622, 635
DpnII GATC 4 cut(s) 460, 502, 620, 633
DraI TTTAAA 3 cut(s) 108, 585, 615
Eco130I CCWWGG 3 cut(s) 328, 750, 898
Eco24I GRGCYC 1 cut(s) 297
Eco47I GGWCC 3 cut(s) 45, 722, 890
Eco57I CTGAAG 2 cut(s) 492, 861
EcoO109I RGGNCCY 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 134, 724
EcoT14I CCWWGG 3 cut(s) 328, 750, 898
EcoT22I ATGCAT 1 cut(s) 550
EcoT38I GRGCYC 1 cut(s) 297
ErhI CCWWGG 3 cut(s) 328, 750, 898
FaeI CATG 4 cut(s) 332, 449, 552, 902
FalI AAGNNNNNCTT 4 cut(s) 34, 66, 629, 661
FaqI GGGAC 1 cut(s) 775
FatI CATG 4 cut(s) 328, 445, 548, 898
FauNDI CATATG 1 cut(s) 818
FbaI TGATCA 1 cut(s) 502
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 1 cut(s) 733
FokI GGATG 4 cut(s) 41, 263, 365, 443
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 1 cut(s) 733
FspBI CTAG 4 cut(s) 344, 657, 858, 1076
GluI GCNGC 1 cut(s) 733
GsaI CCCAGC 1 cut(s) 999
GsuI CTGGAG 1 cut(s) 411
HapII CCGG 1 cut(s) 175
Hin1II CATG 4 cut(s) 332, 449, 552, 902
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 141
HinfI GANTC 5 cut(s) 756, 795, 848, 861, 1072
HpaII CCGG 1 cut(s) 175
HphI GGTGA 2 cut(s) 142, 835
Hpy166II GTNNAC 4 cut(s) 13, 202, 529, 722
Hpy188I TCNGA 1 cut(s) 1014
Hpy188III TCNNGA 5 cut(s) 74, 760, 792, 893, 1025
Hpy8I GTNNAC 4 cut(s) 13, 202, 529, 722
HpyAV CCTTC 4 cut(s) 36, 421, 823, 885
HpyCH4III ACNGT 6 cut(s) 365, 500, 517, 719, 776, 1057
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 7 cut(s) 129, 260, 548, 592, 601, 933, 982
HpyF10VI GCNNNNNNNGC 1 cut(s) 598
HpyF3I CTNAG 2 cut(s) 422, 743
HpySE526I ACGT 1 cut(s) 20
Hsp92II CATG 4 cut(s) 332, 449, 552, 902
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 4 cut(s) 460, 502, 620, 633
LmnI GCTCC 2 cut(s) 183, 752
Lsp1109I GCAGC 1 cut(s) 744
LweI GCATC 2 cut(s) 165, 669
MabI ACCWGGT 1 cut(s) 724
MaeI CTAG 4 cut(s) 344, 657, 858, 1076
MaeII ACGT 1 cut(s) 20
MaeIII GTNAC 3 cut(s) 74, 359, 1057
MalI GATC 4 cut(s) 462, 504, 622, 635
MboI GATC 4 cut(s) 460, 502, 620, 633
MboII GAAGA 1 cut(s) 485
MflI RGATCY 1 cut(s) 620
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 8 cut(s) 69, 439, 580, 833, 950, 983, 1017, 1039
MlyI GAGTC 3 cut(s) 789, 870, 1066
MmeI TCCRAC 1 cut(s) 1089
Mph1103I ATGCAT 1 cut(s) 550
MseI TTAA 7 cut(s) 107, 146, 510, 584, 614, 693, 813
MslI CAYNNNNRTG 1 cut(s) 821
MspI CCGG 1 cut(s) 175
MspR9I CCNGG 3 cut(s) 136, 175, 726
Mva1269I GAATGC 1 cut(s) 550
MvaI CCWGG 2 cut(s) 136, 726
MwoI GCNNNNNNNGC 1 cut(s) 598
NciI CCSGG 1 cut(s) 175
NcoI CCATGG 2 cut(s) 328, 898
NdeI CATATG 1 cut(s) 818
NdeII GATC 4 cut(s) 460, 502, 620, 633
NlaIII CATG 4 cut(s) 332, 449, 552, 902
NlaIV GGNNCC 4 cut(s) 47, 179, 380, 622
NmuCI GTSAC 2 cut(s) 74, 359
NsiI ATGCAT 1 cut(s) 550
PctI GAATGC 1 cut(s) 550
PfeI GAWTC 2 cut(s) 756, 848
PflMI CCANNNNNTGG 4 cut(s) 334, 389, 630, 899
PkrI GCNGC 1 cut(s) 734
PleI GAGTC 3 cut(s) 789, 869, 1066
PpsI GAGTC 3 cut(s) 789, 869, 1066
PpuMI RGGWCCY 1 cut(s) 45
PshAI GACNNNNGTC 1 cut(s) 860
Psp5II RGGWCCY 1 cut(s) 45
Psp6I CCWGG 2 cut(s) 134, 724
PspFI CCCAGC 1 cut(s) 995
PspGI CCWGG 2 cut(s) 134, 724
PspN4I GGNNCC 4 cut(s) 47, 179, 380, 622
PspPI GGNCC 3 cut(s) 45, 722, 890
PspPPI RGGWCCY 1 cut(s) 45
PstI CTGCAG 1 cut(s) 603
PstNI CAGNNNCTG 1 cut(s) 774
PsuI RGATCY 1 cut(s) 620
RsaI GTAC 3 cut(s) 185, 273, 786
RsaNI GTAC 3 cut(s) 184, 272, 785
RseI CAYNNNNRTG 1 cut(s) 821
SaqAI TTAA 7 cut(s) 107, 146, 510, 584, 614, 693, 813
SatI GCNGC 1 cut(s) 733
Sau3AI GATC 4 cut(s) 460, 502, 620, 633
Sau96I GGNCC 3 cut(s) 45, 722, 890
SbfI CCTGCAGG 1 cut(s) 603
SchI GAGTC 3 cut(s) 789, 870, 1066
ScrFI CCNGG 3 cut(s) 136, 175, 726
SdaI CCTGCAGG 1 cut(s) 603
SduI GDGCHC 1 cut(s) 297
SexAI ACCWGGT 1 cut(s) 724
SfaNI GCATC 2 cut(s) 165, 669
SfcI CTRYAG 1 cut(s) 599
SinI GGWCC 3 cut(s) 45, 722, 890
SmiI ATTTAAAT 1 cut(s) 615
SmiMI CAYNNNNRTG 1 cut(s) 821
SmlI CTYRAG 2 cut(s) 85, 569
SmoI CTYRAG 2 cut(s) 85, 569
Sse8387I CCTGCAGG 1 cut(s) 603
Sse9I AATT 8 cut(s) 69, 439, 580, 833, 950, 983, 1017, 1039
SsiI CCGC 1 cut(s) 652
SspMI CTAG 4 cut(s) 344, 657, 858, 1076
StyD4I CCNGG 3 cut(s) 134, 173, 724
StyI CCWWGG 3 cut(s) 328, 750, 898
SwaI ATTTAAAT 1 cut(s) 615
TaaI ACNGT 6 cut(s) 365, 500, 517, 719, 776, 1057
TaiI ACGT 1 cut(s) 23
TaqI TCGA 3 cut(s) 291, 798, 1050
TasI AATT 8 cut(s) 69, 439, 580, 833, 950, 983, 1017, 1039
TatI WGTACW 1 cut(s) 784
TfiI GAWTC 2 cut(s) 756, 848
Tru1I TTAA 7 cut(s) 107, 146, 510, 584, 614, 693, 813
Tru9I TTAA 7 cut(s) 107, 146, 510, 584, 614, 693, 813
TscAI CASTG 4 cut(s) 102, 505, 635, 1089
TseFI GTSAC 2 cut(s) 74, 359
TseI GCWGC 1 cut(s) 732
Tsp45I GTSAC 2 cut(s) 74, 359
TspDTI ATGAA 9 cut(s) 43, 246, 278, 434, 452, 657, 842, 924, 984
TspGWI ACGGA 1 cut(s) 211
TspRI CASTG 4 cut(s) 102, 505, 635, 1089
Van91I CCANNNNNTGG 4 cut(s) 334, 389, 630, 899
VpaK11BI GGWCC 3 cut(s) 45, 722, 890
XapI RAATTY 3 cut(s) 439, 833, 950
XmiI GTMKAC 1 cut(s) 528
XspI CTAG 4 cut(s) 344, 657, 858, 1076
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.