Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017803

Physical Location & Seq

Genomic Coordinates Reverse (-)

52719815 .. 52724777

Gene Structure 4963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39639

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTGTGTAATACCAATAAGTGCCTTCTTTGCTTCAAGTCTTTGGTTTGGAAACACCGGTTACTTGCATATTTCTGGGGCTTTCATCCAAATGCTCAAAGCTCTAAAATCCAACTTATGTGGCACTGATAAACCAAGGTGCGACGTGGTCTCAAACATGTTGCTGGTCAGTGTTGGAGTTGTCTTTTCCTTGTACCGGGAGATTTATTTTAACGTAGTTGGTACACTTTCCCAGGTTACGGGCATCTTTGCAGAAGCTCTTAGGCTGGTCTTAACACAAGTCCTTCTGCAGAAGAAGGGTTTGACTTTAAATCCAATCACCAGCTTATACCATATAGCTCCATGCAGTTTCACAAATTCAGTTCAGCTTCTGGATTTTTTCTCCAATGCTCTATGTGCTTTGGCTTTGAACTTCTCGATATTCTTCGTAATTGGTAGAACTGGAGCAGTTACCATCCGAGTTGCTGGTATTTCAAAATTTCAGTTAACGAGTTGGTCAATTTCTTCTGCAGCGTTGTGTGGTGCTGTCATTTACAACTACATAAAGGTTAAGGATGTGCGTGCATCTGCATCTCAGCTGCCTATTGACACTATTCCAGACAGAATATCGAAGGAGAGATTGGAAGCAAAAACTTTGTTTGCATCTAAAGAAGTTGAGGAGGAGGCTAGAAAGGTATCCCCAAAGAAATTTGTGCCAGCTGAGGATACGGAAATGGCCGAGGAACAACAGAGTCCGAAAGTGGCTGCCATAGTGAATTCTCAGACTCTTGAAGAGGTTGCAAGACTTGAACAGGCACTGAAGTCAGGTCAGCTTCCTGCAGATTTGAAAATTTTGGATGAGGATACTCCAATGAATACTGTTAAAGACAAGGATGATGAAATGGCTGTAACTAATGAAAATGAGGCCAATGTTGAAGTAAAAGATGTGGAGGAACAGAAGAACAATGAAGCAGAATCAATGGATCAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

323

Amino Acids

35.53

Weight (kDa)

5.01

Isoelectric Point (pI)

23.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017803)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427471
rosa_laevigata	RLG00000007234 RLG00000007237 RLG00000007240
rosa_multiflora	Rmu_sc0000603.1_g000013
rosa_roxburghii	Rroxscaffold_5G00369120
rosa_rugosa	Rorug04G0208500 Rorug04G0208600
rosa_samantha	Rh4CG295400 Rh4DG277800 Rh4DG283200
rosa_wichuraiana	Rw4G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	969
AcoI	YGGCCR	1 cut(s)	714
AcsI	RAATTY	5 cut(s)	355, 476, 686, 754, 828
AcuI	CTGAAG	1 cut(s)	818
AfaI	GTAC	2 cut(s)	194, 223
AfiI	CCNNNNNNNGG	2 cut(s)	195, 238
AflIII	ACRYGT	1 cut(s)	156
AgeI	ACCGGT	1 cut(s)	56
AgsI	TTSAA	7 cut(s)	36, 409, 474, 770, 788, 826, 914
AjiI	CACGTC	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	231
AjuI	GAANNNNNNNTTGG	2 cut(s)	602, 634
AluBI	AGCT	8 cut(s)	101, 257, 324, 338, 367, 577, 698, 811
AluI	AGCT	8 cut(s)	101, 257, 324, 338, 367, 577, 698, 811
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	1 cut(s)	969
AlwNI	CAGNNNCTG	2 cut(s)	370, 796
AoxI	GGCC	2 cut(s)	714, 903
ApeKI	GCWGC	3 cut(s)	509, 577, 743
ApoI	RAATTY	5 cut(s)	355, 476, 686, 754, 828
AsiGI	ACCGGT	1 cut(s)	56
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	310
BbvCI	CCTCAGC	1 cut(s)	699
BbvI	GCAGC	3 cut(s)	521, 564, 730
BccI	CCATC	1 cut(s)	461
BciT130I	CCWGG	1 cut(s)	233
BciVI	GTATCC	3 cut(s)	685, 697, 835
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	666
BfmI	CTRYAG	3 cut(s)	287, 507, 816
BfuI	GTATCC	3 cut(s)	685, 697, 835
BisI	GCNGC	3 cut(s)	510, 578, 744
BlsI	GCNGC	3 cut(s)	511, 579, 745
Bme1390I	CCNGG	2 cut(s)	197, 233
BmgBI	CACGTC	1 cut(s)	145
BmrFI	CCNGG	2 cut(s)	197, 233
BmsI	GCATC	4 cut(s)	252, 572, 578, 650
BpmI	CTGGAG	1 cut(s)	462
Bpu10I	CCTNAGC	1 cut(s)	699
BpuMI	CCSGG	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	3 cut(s)	134, 231, 717
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 238
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	3 cut(s)	134, 231, 717
BseGI	GGATG	5 cut(s)	84, 453, 559, 841, 877
BseLI	CCNNNNNNNGG	2 cut(s)	195, 238
BseMII	CTCAG	3 cut(s)	587, 690, 773
BseNI	ACTGG	1 cut(s)	445
BseRI	GAGGAG	2 cut(s)	671, 674
BseXI	GCAGC	3 cut(s)	521, 564, 730
BshFI	GGCC	2 cut(s)	716, 905
BshTI	ACCGGT	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	57, 196
BslI	CCNNNNNNNGG	2 cut(s)	195, 238
BsmAI	GTCTC	1 cut(s)	154
BsnI	GGCC	2 cut(s)	716, 905
Bso31I	GGTCTC	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	961
BspANI	GGCC	2 cut(s)	716, 905
BspCNI	CTCAG	3 cut(s)	586, 691, 772
BspMAI	CTGCAG	3 cut(s)	291, 511, 820
BspPI	GGATC	1 cut(s)	969
BspTNI	GGTCTC	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	445
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	3 cut(s)	134, 231, 717
BssMI	GATC	1 cut(s)	961
BssT1I	CCWWGG	1 cut(s)	134
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	859
Bst6I	CTCTTC	1 cut(s)	765
BstC8I	GCNNGC	2 cut(s)	561, 696
BstDEI	CTNAG	4 cut(s)	260, 573, 699, 759
BstF5I	GGATG	5 cut(s)	84, 453, 559, 841, 877
BstKTI	GATC	1 cut(s)	964
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	961
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 395
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	1 cut(s)	160
BstSCI	CCNGG	2 cut(s)	195, 231
BstSFI	CTRYAG	3 cut(s)	287, 507, 816
BstV1I	GCAGC	3 cut(s)	521, 564, 730
BsuI	GTATCC	3 cut(s)	685, 697, 835
BsuRI	GGCC	2 cut(s)	716, 905
BtrI	CACGTC	1 cut(s)	145
BtsCI	GGATG	5 cut(s)	84, 453, 559, 841, 877
BtsIMutI	CAGTG	3 cut(s)	123, 175, 794
Cac8I	GCNNGC	2 cut(s)	561, 696
CaiI	CAGNNNCTG	2 cut(s)	370, 796
Cfr10I	RCCGGY	1 cut(s)	56
Csp6I	GTAC	2 cut(s)	193, 222
CspAI	ACCGGT	1 cut(s)	56
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	2 cut(s)	157, 342
CviQI	GTAC	2 cut(s)	193, 222
DdeI	CTNAG	4 cut(s)	260, 573, 699, 759
DpnI	GATC	1 cut(s)	963
DpnII	GATC	1 cut(s)	961
DraI	TTTAAA	1 cut(s)	309
EaeI	YGGCCR	1 cut(s)	714
Eam1104I	CTCTTC	1 cut(s)	765
EarI	CTCTTC	1 cut(s)	765
Eco130I	CCWWGG	1 cut(s)	134
Eco31I	GGTCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	818
EcoRI	GAATTC	1 cut(s)	754
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	134
FaeI	CATG	2 cut(s)	160, 345
FatI	CATG	2 cut(s)	156, 341
Fnu4HI	GCNGC	3 cut(s)	510, 578, 744
FokI	GGATG	5 cut(s)	71, 440, 566, 848, 884
Fsp4HI	GCNGC	3 cut(s)	510, 578, 744
FspBI	CTAG	1 cut(s)	666
GluI	GCNGC	3 cut(s)	510, 578, 744
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	2 cut(s)	716, 905
HapII	CCGG	2 cut(s)	57, 196
Hin1II	CATG	2 cut(s)	160, 345
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HinfI	GANTC	3 cut(s)	730, 763, 953
HpaI	GTTAAC	1 cut(s)	486
HpaII	CCGG	2 cut(s)	57, 196
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	2 cut(s)	224, 486
Hpy188I	TCNGA	3 cut(s)	458, 735, 762
Hpy188III	TCNNGA	5 cut(s)	371, 415, 596, 767, 965
Hpy8I	GTNNAC	2 cut(s)	224, 486
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	4 cut(s)	34, 289, 293, 604
HpyCH4III	ACNGT	1 cut(s)	859
HpyCH4IV	ACGT	2 cut(s)	144, 213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 395
HpyF3I	CTNAG	4 cut(s)	260, 573, 699, 759
HpySE526I	ACGT	2 cut(s)	144, 213
Hsp92II	CATG	2 cut(s)	160, 345
KspAI	GTTAAC	1 cut(s)	486
Kzo9I	GATC	1 cut(s)	961
LmnI	GCTCC	2 cut(s)	343, 443
Lsp1109I	GCAGC	3 cut(s)	521, 564, 730
LweI	GCATC	4 cut(s)	252, 572, 578, 650
MaeI	CTAG	1 cut(s)	666
MaeII	ACGT	2 cut(s)	144, 213
MaeIII	GTNAC	4 cut(s)	59, 235, 448, 886
MalI	GATC	1 cut(s)	963
MboI	GATC	1 cut(s)	961
MboII	GAAGA	5 cut(s)	304, 415, 495, 782, 949
MluCI	AATT	7 cut(s)	355, 429, 476, 498, 686, 754, 828
MlyI	GAGTC	2 cut(s)	739, 757
MmeI	TCCRAC	2 cut(s)	135, 154
MnlI	CCTC	9 cut(s)	649, 652, 655, 694, 712, 766, 832, 895, 922
MseI	TTAA	6 cut(s)	210, 272, 308, 485, 549, 861
MslI	CAYNNNNRTG	1 cut(s)	89
MspA1I	CMGCKG	2 cut(s)	577, 698
MspI	CCGG	2 cut(s)	57, 196
MspR9I	CCNGG	2 cut(s)	197, 233
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	2 cut(s)	29, 395
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	1 cut(s)	961
NlaIII	CATG	2 cut(s)	160, 345
NmeAIII	GCCGAG	1 cut(s)	742
NspI	RCATGY	1 cut(s)	160
PciI	ACATGT	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	953
PflFI	GACNNNGTC	1 cut(s)	146
PinAI	ACCGGT	1 cut(s)	56
PkrI	GCNGC	3 cut(s)	511, 579, 745
PleI	GAGTC	2 cut(s)	738, 757
PpsI	GAGTC	2 cut(s)	738, 757
PscI	ACATGT	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PstI	CTGCAG	3 cut(s)	291, 511, 820
PstNI	CAGNNNCTG	2 cut(s)	370, 796
PsyI	GACNNNGTC	1 cut(s)	146
PvuII	CAGCTG	2 cut(s)	577, 698
RsaI	GTAC	2 cut(s)	194, 223
RsaNI	GTAC	2 cut(s)	193, 222
RseI	CAYNNNNRTG	1 cut(s)	89
SaqAI	TTAA	6 cut(s)	210, 272, 308, 485, 549, 861
SatI	GCNGC	3 cut(s)	510, 578, 744
Sau3AI	GATC	1 cut(s)	961
SchI	GAGTC	2 cut(s)	739, 757
ScrFI	CCNGG	2 cut(s)	197, 233
SfaNI	GCATC	4 cut(s)	252, 572, 578, 650
SfcI	CTRYAG	3 cut(s)	287, 507, 816
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse9I	AATT	7 cut(s)	355, 429, 476, 498, 686, 754, 828
SspMI	CTAG	1 cut(s)	666
StyD4I	CCNGG	2 cut(s)	195, 231
StyI	CCWWGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	859
TaiI	ACGT	2 cut(s)	147, 216
TaqI	TCGA	2 cut(s)	416, 608
TasI	AATT	7 cut(s)	355, 429, 476, 498, 686, 754, 828
TfiI	GAWTC	1 cut(s)	953
Tru1I	TTAA	6 cut(s)	210, 272, 308, 485, 549, 861
Tru9I	TTAA	6 cut(s)	210, 272, 308, 485, 549, 861
TscAI	CASTG	3 cut(s)	130, 175, 801
TseI	GCWGC	3 cut(s)	509, 577, 743
TspDTI	ATGAA	5 cut(s)	73, 866, 891, 909, 960
TspGWI	ACGGA	1 cut(s)	722
TspRI	CASTG	3 cut(s)	130, 175, 801
Tth111I	GACNNNGTC	1 cut(s)	146
XapI	RAATTY	5 cut(s)	355, 476, 686, 754, 828
XceI	RCATGY	1 cut(s)	160
XspI	CTAG	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.