Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0017803

Physical Location & Seq

Genomic Coordinates Forward (+)

50488191 .. 50490232

Gene Structure 2042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG283200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCCGAGGAACAACAGACTCCAAAAGTGGTTGCCCCCACTCAGGACCAAATTAATGCTATCAAGGCTGCCATAGTGAATTCTCAGACTCTTGAAGAGGTTGCAAGACTTGAACAGGCACTGAAGTCAGGTCAGCTTCCTGCAGATTTGAAAATTTTGGATGAGGATACTCCAATGAATACTGTTAAAGACAAGGATGATGAAATGGCTGTAACTAATGAAAATGAGGCCAATGTTGAAGTAAAAGATGTGGAGGAACAGAAGAACAATGAAGCAGAATCAATGGATCAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015030 GO:0016070 GO:0016071 GO:0016604 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LRR_9

Protein Analysis

98

Amino Acids

10.88

Weight (kDa)

4.13

Isoelectric Point (pI)

34.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017803)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427471
rosa_laevigata	RLG00000007234 RLG00000007237 RLG00000007240
rosa_multiflora	Rmu_sc0000603.1_g000013
rosa_roxburghii	Rroxscaffold_5G00369120
rosa_rugosa	Rorug04G0208500 Rorug04G0208600
rosa_samantha	Rh4CG295400 Rh4DG277800 Rh4DG283200
rosa_wichuraiana	Rw4G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	294
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	79, 153
AcuI	CTGAAG	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	4 cut(s)	95, 113, 151, 239
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
AlwI	GGATC	1 cut(s)	294
AlwNI	CAGNNNCTG	1 cut(s)	121
AoxI	GGCC	2 cut(s)	3, 228
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	2 cut(s)	79, 153
AseI	ATTAAT	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	55
BciVI	GTATCC	1 cut(s)	160
BfmI	CTRYAG	1 cut(s)	141
BfuI	GTATCC	1 cut(s)	160
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	2 cut(s)	166, 202
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	2 cut(s)	56, 98
BseXI	GCAGC	1 cut(s)	55
BshFI	GGCC	2 cut(s)	5, 230
BslI	CCNNNNNNNGG	1 cut(s)	43
BsnI	GGCC	2 cut(s)	5, 230
Bsp143I	GATC	1 cut(s)	286
BspANI	GGCC	2 cut(s)	5, 230
BspCNI	CTCAG	2 cut(s)	55, 97
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	1 cut(s)	294
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	42, 84
BstF5I	GGATG	2 cut(s)	166, 202
BstKTI	GATC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	55
BsuI	GTATCC	1 cut(s)	160
BsuRI	GGCC	2 cut(s)	5, 230
BtsCI	GGATG	2 cut(s)	166, 202
BtsIMutI	CAGTG	1 cut(s)	119
CaiI	CAGNNNCTG	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	46
CviJI	RGCY	5 cut(s)	5, 68, 136, 209, 230
CviKI_1	RGCY	5 cut(s)	5, 68, 136, 209, 230
DdeI	CTNAG	2 cut(s)	42, 84
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	143
EcoRI	GAATTC	1 cut(s)	79
FaiI	YATR	1 cut(s)	74
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	2 cut(s)	173, 209
Fsp4HI	GCNGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	5, 230
HinfI	GANTC	3 cut(s)	19, 88, 278
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	3 cut(s)	44, 92, 290
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	2 cut(s)	104, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	2 cut(s)	42, 84
Kzo9I	GATC	1 cut(s)	286
LpnPI	CCDG	5 cut(s)	29, 101, 114, 153, 275
Lsp1109I	GCAGC	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	2 cut(s)	107, 274
MluCI	AATT	3 cut(s)	51, 79, 153
MlyI	GAGTC	2 cut(s)	13, 82
MnlI	CCTC	4 cut(s)	91, 157, 220, 247
MseI	TTAA	2 cut(s)	54, 186
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	1 cut(s)	286
NmeAIII	GCCGAG	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	2 cut(s)	13, 82
PpsI	GAGTC	2 cut(s)	13, 82
PshBI	ATTAAT	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	54, 186
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	2 cut(s)	13, 82
SetI	ASST	3 cut(s)	102, 133, 138
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	46
Sse9I	AATT	3 cut(s)	51, 79, 153
TaaI	ACNGT	1 cut(s)	184
TasI	AATT	3 cut(s)	51, 79, 153
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	2 cut(s)	54, 186
Tru9I	TTAA	2 cut(s)	54, 186
TscAI	CASTG	1 cut(s)	126
TseI	GCWGC	1 cut(s)	68
TspDTI	ATGAA	4 cut(s)	191, 216, 234, 285
TspRI	CASTG	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	46
VspI	ATTAAT	1 cut(s)	54
XapI	RAATTY	2 cut(s)	79, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.