Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0017803

Physical Location & Seq

Genomic Coordinates Reverse (-)

55465704 .. 55470523

Gene Structure 4820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG295400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGACACTTGAAATGTTTGGAAACACTGGTTACTTGCAAATTTCTGGGGCTTTCATCCAAATGCTCAAAGCTCTGAAGTCTATCATAAGTCATAACCAGGCTAAAGATATTGGTTATGCAATAGCGTTGTGTGGTGCTGTCATTTACAACTACATAAAGGTTAAGGATGTGCGTGCATCTGCATCTCAGCTGCCTATTGACACTATTCCAGACAGAATATCGAAGGAGAGATTGGAAGCAAAAACTTTGTTTGCATCTAAAGAAGTTGAGGAGGAGGCTAGAAAGGTATCCCCAAAGAAATTTGTGCCAGCTGAGGATACGGAAATGGCCGAGGAACAACAGACTCCGAAAGTGGTTGCCCCCACTCAGGACCAAATTAATGCTATCAAGGCTGCCATAGTGAATTCTCAGACTCTTGAAGAGGTTGCAAGACTTGAACAGGCACTGAAGTCAGGTCAGCTTCCTGCAGATTTGAAAATTTTGGATGAGGATACTCCAATGAATACTGTTAAAGACAAGGATGACGAAATGGCTGTAACTAATGAAAATGTTGAGGCCAATGTTGAAGTAAAAGATGTGGAGGAACAGAAGAACAATGAAGCAGAATCAATGGATCAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015030 GO:0016070 GO:0016071 GO:0016604 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LRR_9

Protein Analysis

207

Amino Acids

22.96

Weight (kDa)

4.63

Isoelectric Point (pI)

28.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017803)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427471
rosa_laevigata	RLG00000007234 RLG00000007237 RLG00000007240
rosa_multiflora	Rmu_sc0000603.1_g000013
rosa_roxburghii	Rroxscaffold_5G00369120
rosa_rugosa	Rorug04G0208500 Rorug04G0208600
rosa_samantha	Rh4CG295400 Rh4DG277800 Rh4DG283200
rosa_wichuraiana	Rw4G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	621
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	4 cut(s)	39, 299, 403, 477
AcuI	CTGAAG	2 cut(s)	95, 467
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgsI	TTSAA	5 cut(s)	11, 419, 437, 475, 566
AjnI	CCWGG	1 cut(s)	96
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AluBI	AGCT	4 cut(s)	71, 190, 311, 460
AluI	AGCT	4 cut(s)	71, 190, 311, 460
AlwI	GGATC	1 cut(s)	621
AlwNI	CAGNNNCTG	1 cut(s)	445
AoxI	GGCC	2 cut(s)	327, 555
ApeKI	GCWGC	2 cut(s)	190, 392
ApoI	RAATTY	4 cut(s)	39, 299, 403, 477
AseI	ATTAAT	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	370
BbvCI	CCTCAGC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	177, 379
BciT130I	CCWGG	1 cut(s)	98
BciVI	GTATCC	3 cut(s)	298, 310, 484
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	465
BfuI	GTATCC	3 cut(s)	298, 310, 484
BisI	GCNGC	2 cut(s)	191, 393
BlsI	GCNGC	2 cut(s)	192, 394
Bme1390I	CCNGG	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	370
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	3 cut(s)	185, 191, 263
Bpu10I	CCTNAGC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse1I	ACTGG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	4 cut(s)	54, 172, 490, 526
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMII	CTCAG	4 cut(s)	200, 303, 380, 422
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	2 cut(s)	284, 287
BseXI	GCAGC	2 cut(s)	177, 379
BshFI	GGCC	2 cut(s)	329, 557
BslI	CCNNNNNNNGG	1 cut(s)	367
BsnI	GGCC	2 cut(s)	329, 557
Bsp143I	GATC	1 cut(s)	613
BspANI	GGCC	2 cut(s)	329, 557
BspCNI	CTCAG	4 cut(s)	199, 304, 379, 421
BspMAI	CTGCAG	1 cut(s)	469
BspPI	GGATC	1 cut(s)	621
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	1 cut(s)	613
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	1 cut(s)	414
BstC8I	GCNNGC	2 cut(s)	174, 309
BstDEI	CTNAG	4 cut(s)	186, 312, 366, 408
BstF5I	GGATG	4 cut(s)	54, 172, 490, 526
BstKTI	GATC	1 cut(s)	616
BstMBI	GATC	1 cut(s)	613
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	96
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	2 cut(s)	177, 379
BsuI	GTATCC	3 cut(s)	298, 310, 484
BsuRI	GGCC	2 cut(s)	329, 557
BtsCI	GGATG	4 cut(s)	54, 172, 490, 526
BtsIMutI	CAGTG	2 cut(s)	24, 443
Cac8I	GCNNGC	2 cut(s)	174, 309
CaiI	CAGNNNCTG	1 cut(s)	445
Cfr13I	GGNCC	1 cut(s)	370
DdeI	CTNAG	4 cut(s)	186, 312, 366, 408
DpnI	GATC	1 cut(s)	615
DpnII	GATC	1 cut(s)	613
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	370
Eco57I	CTGAAG	2 cut(s)	95, 467
EcoRI	GAATTC	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	96
FaiI	YATR	5 cut(s)	86, 93, 117, 155, 398
Fnu4HI	GCNGC	2 cut(s)	191, 393
FokI	GGATG	4 cut(s)	41, 179, 497, 533
Fsp4HI	GCNGC	2 cut(s)	191, 393
FspBI	CTAG	1 cut(s)	279
GluI	GCNGC	2 cut(s)	191, 393
HaeIII	GGCC	2 cut(s)	329, 557
HinfI	GANTC	3 cut(s)	343, 412, 605
Hpy188I	TCNGA	3 cut(s)	75, 348, 411
Hpy188III	TCNNGA	4 cut(s)	209, 368, 416, 617
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4V	TGCA	7 cut(s)	37, 119, 176, 182, 254, 428, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	4 cut(s)	186, 312, 366, 408
Kzo9I	GATC	1 cut(s)	613
Lsp1109I	GCAGC	2 cut(s)	177, 379
LweI	GCATC	3 cut(s)	185, 191, 263
MaeI	CTAG	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	29, 535
MalI	GATC	1 cut(s)	615
MboI	GATC	1 cut(s)	613
MboII	GAAGA	2 cut(s)	431, 601
MluCI	AATT	5 cut(s)	39, 299, 375, 403, 477
MlyI	GAGTC	2 cut(s)	337, 406
MnlI	CCTC	9 cut(s)	262, 265, 268, 307, 325, 415, 481, 547, 574
MseI	TTAA	3 cut(s)	162, 378, 510
MslI	CAYNNNNRTG	1 cut(s)	59
MspA1I	CMGCKG	2 cut(s)	190, 311
MspR9I	CCNGG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	389
NdeII	GATC	1 cut(s)	613
NmeAIII	GCCGAG	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	605
PkrI	GCNGC	2 cut(s)	192, 394
PleI	GAGTC	2 cut(s)	337, 406
PpsI	GAGTC	2 cut(s)	337, 406
PshBI	ATTAAT	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	370
PstI	CTGCAG	1 cut(s)	469
PstNI	CAGNNNCTG	1 cut(s)	445
PvuII	CAGCTG	2 cut(s)	190, 311
RseI	CAYNNNNRTG	1 cut(s)	59
SaqAI	TTAA	3 cut(s)	162, 378, 510
SatI	GCNGC	2 cut(s)	191, 393
Sau3AI	GATC	1 cut(s)	613
Sau96I	GGNCC	1 cut(s)	370
SchI	GAGTC	2 cut(s)	337, 406
ScrFI	CCNGG	1 cut(s)	98
SetI	ASST	8 cut(s)	73, 162, 192, 288, 313, 426, 457, 462
SfaNI	GCATC	3 cut(s)	185, 191, 263
SfcI	CTRYAG	1 cut(s)	465
SinI	GGWCC	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	59
Sse9I	AATT	5 cut(s)	39, 299, 375, 403, 477
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	508
TaqI	TCGA	1 cut(s)	221
TasI	AATT	5 cut(s)	39, 299, 375, 403, 477
TfiI	GAWTC	1 cut(s)	605
Tru1I	TTAA	3 cut(s)	162, 378, 510
Tru9I	TTAA	3 cut(s)	162, 378, 510
TscAI	CASTG	2 cut(s)	31, 450
TseI	GCWGC	2 cut(s)	190, 392
TspDTI	ATGAA	4 cut(s)	43, 515, 558, 612
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	2 cut(s)	31, 450
VpaK11BI	GGWCC	1 cut(s)	370
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	4 cut(s)	39, 299, 403, 477
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.