Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0017803

Physical Location & Seq

Genomic Coordinates Reverse (-)

36407923 .. 36409051

Gene Structure 1129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0208600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGATTTGAGATCTGAAATCGATCGCCTTTCTCGCAAGCGCAAGGAGAACAATCTCCGACGCGTCGTTGAGACCTCGGAAGGAAATCTCCGCATCTTCGTTCTCGCTTTCTCCTCCTCCGACCACGACGTCGACGAAGGAGACAACGGCGGCTCCAGAAAACGCATGAGGCGAGACCGCGGCTGCAACGCCGTCGTTTCATCCACCAAGCTCGCCGCGGAGCCCACCAGGCCCGTCAGATCCGCCGTGAAACCCTATGACGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACGAGGGGCATCGGCATGAAATTGCAGATGAAGATGGGCTATAACGGACGTGGACTCGGCAAAAACGAGGAAGGTATTGAAGCCGAATTGAGGTCCAAAAATGAAGGTCTTGGTTTTGATTACAAGGAGGGGACTAAGCTGCTGCGGCGGCCCACATCGTTTGTGAAAGCCAAGGTGGTGCACAAAAGTGTCGCTGCTGGTGACAATGATCACAAGAAGAGCAAAACAGAAATAACCACAAAACCAAGCAGCCTAGACACTAGTACAGTGGAAGAACCCAAGCCCAACGAGCAGCCTAATGAGGCAATTACCAGTGCCGCCGCCGCCACCGGCATGGAGAAGAAGACGACTATCAAAGGTGTCGATTTGCTGGGAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAACTTGAGTTTGAAAGGTACCAGCTCCACGTGCATCTTAGCTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015030 GO:0016070 GO:0016071 GO:0016604 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LRR_9

Protein Analysis

258

Amino Acids

28.33

Weight (kDa)

9.3

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	101 - 138	5.3e-07	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017803)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427471
rosa_laevigata	RLG00000007234 RLG00000007237 RLG00000007240
rosa_multiflora	Rmu_sc0000603.1_g000013
rosa_roxburghii	Rroxscaffold_5G00369120
rosa_rugosa	Rorug04G0208500 Rorug04G0208600
rosa_samantha	Rh4CG295400 Rh4DG277800 Rh4DG283200
rosa_wichuraiana	Rw4G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AatII	GACGTC	1 cut(s)	132
Acc65I	GGTACC	1 cut(s)	746
AccB1I	GGYRCC	1 cut(s)	746
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	3 cut(s)	63, 180, 218
AclWI	GGATC	2 cut(s)	234, 279
AcoI	YGGCCR	1 cut(s)	717
AcvI	CACGTG	1 cut(s)	759
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	2 cut(s)	565, 748
AfiI	CCNNNNNNNGG	2 cut(s)	390, 707
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	380, 742
AhlI	ACTAGT	1 cut(s)	560
AjiI	CACGTC	1 cut(s)	350
AjnI	CCWGG	1 cut(s)	227
AleI	CACNNNNGTG	1 cut(s)	486
AluBI	AGCT	4 cut(s)	211, 439, 753, 770
AluI	AGCT	4 cut(s)	211, 439, 753, 770
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	3 cut(s)	65, 135, 168
Alw44I	GTGCAC	1 cut(s)	479
AlwI	GGATC	2 cut(s)	234, 279
AoxI	GGCC	3 cut(s)	230, 449, 717
ApaLI	GTGCAC	1 cut(s)	479
ApeKI	GCWGC	6 cut(s)	183, 439, 442, 494, 549, 592
Asp718I	GGTACC	1 cut(s)	746
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	3 cut(s)	231, 393, 450
AsuHPI	GGTGA	2 cut(s)	512, 691
AvaII	GGWCC	1 cut(s)	393
BaeGI	GKGCMC	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	746
BanII	GRGCYC	1 cut(s)	225
BauI	CACGAG	1 cut(s)	301
BbrPI	CACGTG	1 cut(s)	759
BbsI	GAAGAC	2 cut(s)	650, 703
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	6 cut(s)	170, 426, 429, 481, 561, 604
BccI	CCATC	3 cut(s)	328, 676, 701
BceAI	ACGGC	3 cut(s)	163, 176, 230
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	1 cut(s)	229
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	3 cut(s)	65, 135, 168
BcuI	ACTAGT	1 cut(s)	560
BfaI	CTAG	2 cut(s)	554, 561
BglI	GCCNNNNNGGC	1 cut(s)	229
BglII	AGATCT	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	393
BmgBI	CACGTC	1 cut(s)	350
BmgT120I	GGNCC	3 cut(s)	231, 393, 450
BmiI	GGNNCC	3 cut(s)	154, 222, 748
BmrFI	CCNGG	1 cut(s)	229
BmsI	GCATC	3 cut(s)	102, 318, 771
BpiI	GAAGAC	2 cut(s)	650, 703
BplI	GAGNNNNNCTC	2 cut(s)	685, 717
BpmI	CTGGAG	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	754
Bsa29I	ATCGAT	1 cut(s)	21
BsaAI	YACGTR	1 cut(s)	759
BsaHI	GRCGYC	1 cut(s)	129
BsaI	GGTCTC	2 cut(s)	65, 168
BsaJI	CCNNGG	4 cut(s)	75, 178, 216, 471
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	2 cut(s)	390, 707
Bse118I	RCCGGY	1 cut(s)	629
Bse1I	ACTGG	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	229
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	4 cut(s)	75, 178, 216, 471
BseGI	GGATG	1 cut(s)	200
BseLI	CCNNNNNNNGG	2 cut(s)	390, 707
BseNI	ACTGG	1 cut(s)	612
BseRI	GAGGAG	2 cut(s)	103, 106
BseSI	GKGCMC	1 cut(s)	483
BseXI	GCAGC	6 cut(s)	170, 426, 429, 481, 561, 604
BseYI	CCCAGC	1 cut(s)	670
Bsh1236I	CGCG	3 cut(s)	63, 180, 218
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	3 cut(s)	232, 451, 719
BshNI	GGYRCC	1 cut(s)	746
BshVI	ATCGAT	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	630
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	390, 707
BsmAI	GTCTC	3 cut(s)	65, 135, 168
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	3 cut(s)	232, 451, 719
Bso31I	GGTCTC	2 cut(s)	65, 168
Bsp1286I	GDGCHC	2 cut(s)	225, 483
Bsp143I	GATC	5 cut(s)	11, 22, 239, 271, 508
BspANI	GGCC	3 cut(s)	232, 451, 719
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	3 cut(s)	63, 180, 218
BspLI	GGNNCC	3 cut(s)	154, 222, 748
BspPI	GGATC	2 cut(s)	234, 279
BspQI	GCTCTTC	1 cut(s)	512
BspT107I	GGYRCC	1 cut(s)	746
BspTNI	GGTCTC	2 cut(s)	65, 168
BsrFI	RCCGGY	1 cut(s)	629
BsrI	ACTGG	1 cut(s)	612
BssAI	RCCGGY	1 cut(s)	629
BssECI	CCNNGG	4 cut(s)	75, 178, 216, 471
BssMI	GATC	5 cut(s)	11, 22, 239, 271, 508
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	471
Bst2BI	CACGAG	1 cut(s)	301
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	2 cut(s)	266, 568
Bst6I	CTCTTC	1 cut(s)	512
BstACI	GRCGYC	1 cut(s)	129
BstBAI	YACGTR	1 cut(s)	759
BstC8I	GCNNGC	2 cut(s)	38, 213
BstDEI	CTNAG	2 cut(s)	435, 766
BstDSI	CCRYGG	2 cut(s)	178, 216
BstF5I	GGATG	1 cut(s)	200
BstFNI	CGCG	3 cut(s)	63, 180, 218
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	5 cut(s)	14, 25, 242, 274, 511
BstMAI	GTCTC	3 cut(s)	65, 135, 168
BstMBI	GATC	5 cut(s)	11, 22, 239, 271, 508
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	7 cut(s)	33, 229, 445, 448, 589, 623, 759
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	227
BstSLI	GKGCMC	1 cut(s)	483
BstUI	CGCG	3 cut(s)	63, 180, 218
BstV1I	GCAGC	6 cut(s)	170, 426, 429, 481, 561, 604
BstV2I	GAAGAC	2 cut(s)	650, 703
BstX2I	RGATCY	3 cut(s)	11, 239, 271
BstXI	CCANNNNNNTGG	1 cut(s)	634
BstYI	RGATCY	3 cut(s)	11, 239, 271
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	232, 451, 719
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	2 cut(s)	178, 216
BtrI	CACGTC	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	200
BtsIMutI	CAGTG	2 cut(s)	573, 619
Cac8I	GCNNGC	2 cut(s)	38, 213
CfoI	GCGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	629
Cfr13I	GGNCC	3 cut(s)	231, 393, 450
Cfr42I	CCGCGG	2 cut(s)	181, 219
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	2 cut(s)	52, 69
Csp6I	GTAC	2 cut(s)	564, 747
CspCI	CAANNNNNGTGG	2 cut(s)	442, 477
CviAII	CATG	3 cut(s)	166, 316, 634
CviQI	GTAC	2 cut(s)	564, 747
DdeI	CTNAG	2 cut(s)	435, 766
DpnI	GATC	5 cut(s)	13, 24, 241, 273, 510
DpnII	GATC	5 cut(s)	11, 22, 239, 271, 508
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	717
Eam1104I	CTCTTC	1 cut(s)	512
EarI	CTCTTC	1 cut(s)	512
EciI	GGCGGA	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	471
Eco24I	GRGCYC	1 cut(s)	225
Eco31I	GGTCTC	2 cut(s)	65, 168
Eco47I	GGWCC	1 cut(s)	393
Eco72I	CACGTG	1 cut(s)	759
EcoRII	CCWGG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	471
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	3 cut(s)	169, 319, 637
FaiI	YATR	7 cut(s)	167, 258, 317, 342, 635, 692, 773
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	3 cut(s)	165, 315, 633
FbaI	TGATCA	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	132
FokI	GGATG	1 cut(s)	187
FriOI	GRGCYC	1 cut(s)	225
FspBI	CTAG	2 cut(s)	554, 561
GlaI	GCGC	1 cut(s)	41
GsaI	CCCAGC	1 cut(s)	674
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	3 cut(s)	232, 451, 719
HapII	CCGG	1 cut(s)	630
HgaI	GACGC	2 cut(s)	52, 69
HhaI	GCGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	3 cut(s)	169, 319, 637
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	354, 711
HpaII	CCGG	1 cut(s)	630
HphI	GGTGA	2 cut(s)	512, 691
Hpy166II	GTNNAC	3 cut(s)	133, 353, 481
Hpy188I	TCNGA	6 cut(s)	16, 59, 79, 121, 239, 276
Hpy188III	TCNNGA	3 cut(s)	156, 292, 704
Hpy8I	GTNNAC	3 cut(s)	133, 353, 481
Hpy99I	CGWCG	7 cut(s)	63, 68, 131, 134, 137, 197, 266
HpyAV	CCTTC	4 cut(s)	74, 131, 365, 398
HpyCH4III	ACNGT	2 cut(s)	266, 568
HpyCH4IV	ACGT	3 cut(s)	129, 349, 758
HpyCH4V	TGCA	4 cut(s)	186, 325, 481, 762
HpyF10VI	GCNNNNNNNGC	7 cut(s)	33, 229, 445, 448, 589, 623, 759
HpyF3I	CTNAG	2 cut(s)	435, 766
HpySE526I	ACGT	3 cut(s)	129, 349, 758
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	169, 319, 637
HspAI	GCGC	1 cut(s)	40
KpnI	GGTACC	1 cut(s)	750
Ksp22I	TGATCA	1 cut(s)	508
KspI	CCGCGG	2 cut(s)	181, 219
Kzo9I	GATC	5 cut(s)	11, 22, 239, 271, 508
LguI	GCTCTTC	1 cut(s)	512
LmnI	GCTCC	3 cut(s)	158, 220, 758
LpnPI	CCDG	8 cut(s)	169, 214, 241, 483, 625, 643, 656, 763
Lsp1109I	GCAGC	6 cut(s)	170, 426, 429, 481, 561, 604
LweI	GCATC	3 cut(s)	102, 318, 771
MaeI	CTAG	2 cut(s)	554, 561
MaeII	ACGT	3 cut(s)	129, 349, 758
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	5 cut(s)	13, 24, 241, 273, 510
MboI	GATC	5 cut(s)	11, 22, 239, 271, 508
MboII	GAAGA	7 cut(s)	88, 343, 529, 584, 652, 655, 708
MflI	RGATCY	3 cut(s)	11, 239, 271
MhlI	GDGCHC	2 cut(s)	225, 483
MluCI	AATT	3 cut(s)	320, 386, 606
MluI	ACGCGT	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	348
MmeI	TCCRAC	2 cut(s)	82, 144
MslI	CAYNNNNRTG	3 cut(s)	314, 486, 632
MspA1I	CMGCKG	2 cut(s)	180, 218
MspI	CCGG	1 cut(s)	630
MspR9I	CCNGG	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	229
MvnI	CGCG	3 cut(s)	63, 180, 218
MwoI	GCNNNNNNNGC	7 cut(s)	33, 229, 445, 448, 589, 623, 759
NdeII	GATC	5 cut(s)	11, 22, 239, 271, 508
NlaIII	CATG	3 cut(s)	169, 319, 637
NlaIV	GGNNCC	3 cut(s)	154, 222, 748
NmeAIII	GCCGAG	1 cut(s)	336
NmuCI	GTSAC	1 cut(s)	500
OliI	CACNNNNGTG	1 cut(s)	486
PciSI	GCTCTTC	1 cut(s)	512
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 169, 363
PfeI	GAWTC	1 cut(s)	711
Ple19I	CGATCG	1 cut(s)	25
PleI	GAGTC	1 cut(s)	348
PmaCI	CACGTG	1 cut(s)	759
PmlI	CACGTG	1 cut(s)	759
PpsI	GAGTC	1 cut(s)	348
Ppu21I	YACGTR	1 cut(s)	759
Psp6I	CCWGG	1 cut(s)	227
PspCI	CACGTG	1 cut(s)	759
PspFI	CCCAGC	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	3 cut(s)	154, 222, 748
PspPI	GGNCC	3 cut(s)	231, 393, 450
PsuI	RGATCY	3 cut(s)	11, 239, 271
PvuI	CGATCG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	565, 748
RsaNI	GTAC	2 cut(s)	564, 747
RseI	CAYNNNNRTG	3 cut(s)	314, 486, 632
SacII	CCGCGG	2 cut(s)	181, 219
SalI	GTCGAC	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	512
Sau3AI	GATC	5 cut(s)	11, 22, 239, 271, 508
Sau96I	GGNCC	3 cut(s)	231, 393, 450
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	229
SduI	GDGCHC	2 cut(s)	225, 483
SfaNI	GCATC	3 cut(s)	102, 318, 771
Sfr303I	CCGCGG	2 cut(s)	181, 219
SgrBI	CCGCGG	2 cut(s)	181, 219
SgrDI	CGTCGACG	1 cut(s)	131
SinI	GGWCC	1 cut(s)	393
SmiMI	CAYNNNNRTG	3 cut(s)	314, 486, 632
SmlI	CTYRAG	1 cut(s)	733
SmoI	CTYRAG	1 cut(s)	733
SpeI	ACTAGT	1 cut(s)	560
Sse9I	AATT	3 cut(s)	320, 386, 606
SspI	AATATT	1 cut(s)	280
SspMI	CTAG	2 cut(s)	554, 561
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	266, 568
TaiI	ACGT	3 cut(s)	132, 352, 761
TaqI	TCGA	4 cut(s)	21, 132, 291, 663
TasI	AATT	3 cut(s)	320, 386, 606
TatI	WGTACW	1 cut(s)	563
TauI	GCSGC	8 cut(s)	153, 183, 218, 448, 451, 620, 623, 626
TfiI	GAWTC	1 cut(s)	711
TscAI	CASTG	2 cut(s)	573, 619
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	6 cut(s)	183, 439, 442, 494, 549, 592
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	4 cut(s)	189, 332, 344, 417
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	573, 619
VneI	GTGCAC	1 cut(s)	479
VpaK11BI	GGWCC	1 cut(s)	393
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	2 cut(s)	554, 561
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.