U2 small nuclear ribonucleoprotein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0427471 |
| rosa_laevigata | RLG00000007234 RLG00000007237 RLG00000007240 |
| rosa_multiflora | Rmu_sc0000603.1_g000013 |
| rosa_roxburghii | Rroxscaffold_5G00369120 |
| rosa_rugosa | Rorug04G0208500 Rorug04G0208600 |
| rosa_samantha | Rh4CG295400 Rh4DG277800 Rh4DG283200 |
| rosa_wichuraiana | Rw4G023790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 278 |
| AcoI | YGGCCR | 1 cut(s) | 171 |
| AcsI | RAATTY | 3 cut(s) | 143, 247, 312 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 211 |
| AgsI | TTSAA | 3 cut(s) | 263, 281, 310 |
| AluBI | AGCT | 3 cut(s) | 52, 155, 295 |
| AluI | AGCT | 3 cut(s) | 52, 155, 295 |
| AoxI | GGCC | 1 cut(s) | 171 |
| ApeKI | GCWGC | 1 cut(s) | 236 |
| ApoI | RAATTY | 3 cut(s) | 143, 247, 312 |
| AseI | ATTAAT | 1 cut(s) | 222 |
| AspS9I | GGNCC | 1 cut(s) | 214 |
| AvaII | GGWCC | 1 cut(s) | 214 |
| BbvCI | CCTCAGC | 1 cut(s) | 156 |
| BbvI | GCAGC | 1 cut(s) | 223 |
| BciVI | GTATCC | 3 cut(s) | 142, 154, 319 |
| BfaI | CTAG | 2 cut(s) | 56, 123 |
| BfmI | CTRYAG | 1 cut(s) | 300 |
| BfuAI | ACCTGC | 1 cut(s) | 278 |
| BfuI | GTATCC | 3 cut(s) | 142, 154, 319 |
| BisI | GCNGC | 1 cut(s) | 237 |
| BlsI | GCNGC | 1 cut(s) | 238 |
| Bme18I | GGWCC | 1 cut(s) | 214 |
| BmgT120I | GGNCC | 1 cut(s) | 214 |
| BmsI | GCATC | 1 cut(s) | 107 |
| Bpu10I | CCTNAGC | 1 cut(s) | 156 |
| BsaJI | CCNNGG | 1 cut(s) | 174 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 211 |
| BseDI | CCNNGG | 1 cut(s) | 174 |
| BseGI | GGATG | 1 cut(s) | 325 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 211 |
| BseMII | CTCAG | 3 cut(s) | 147, 224, 266 |
| BseRI | GAGGAG | 2 cut(s) | 128, 131 |
| BseXI | GCAGC | 1 cut(s) | 223 |
| BshFI | GGCC | 1 cut(s) | 173 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 211 |
| BsnI | GGCC | 1 cut(s) | 173 |
| Bsp143I | GATC | 1 cut(s) | 74 |
| BspANI | GGCC | 1 cut(s) | 173 |
| BspCNI | CTCAG | 3 cut(s) | 148, 223, 265 |
| BspMAI | CTGCAG | 1 cut(s) | 304 |
| BspMI | ACCTGC | 1 cut(s) | 278 |
| BssECI | CCNNGG | 1 cut(s) | 174 |
| BssMI | GATC | 1 cut(s) | 74 |
| Bst4CI | ACNGT | 1 cut(s) | 343 |
| BstC8I | GCNNGC | 3 cut(s) | 25, 50, 153 |
| BstDEI | CTNAG | 3 cut(s) | 156, 210, 252 |
| BstF5I | GGATG | 1 cut(s) | 325 |
| BstKTI | GATC | 1 cut(s) | 77 |
| BstMBI | GATC | 1 cut(s) | 74 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 233 |
| BstSFI | CTRYAG | 1 cut(s) | 300 |
| BstV1I | GCAGC | 1 cut(s) | 223 |
| BsuI | GTATCC | 3 cut(s) | 142, 154, 319 |
| BsuRI | GGCC | 1 cut(s) | 173 |
| BtsCI | GGATG | 1 cut(s) | 325 |
| BveI | ACCTGC | 1 cut(s) | 278 |
| Cac8I | GCNNGC | 3 cut(s) | 25, 50, 153 |
| Cfr13I | GGNCC | 1 cut(s) | 214 |
| CviAII | CATG | 2 cut(s) | 28, 35 |
| CviJI | RGCY | 7 cut(s) | 48, 52, 122, 155, 173, 236, 295 |
| CviKI_1 | RGCY | 7 cut(s) | 48, 52, 122, 155, 173, 236, 295 |
| DdeI | CTNAG | 3 cut(s) | 156, 210, 252 |
| DpnI | GATC | 1 cut(s) | 76 |
| DpnII | GATC | 1 cut(s) | 74 |
| EaeI | YGGCCR | 1 cut(s) | 171 |
| Eco47I | GGWCC | 1 cut(s) | 214 |
| EcoRI | GAATTC | 1 cut(s) | 247 |
| FaeI | CATG | 2 cut(s) | 31, 38 |
| FaiI | YATR | 4 cut(s) | 29, 36, 64, 242 |
| FatI | CATG | 2 cut(s) | 27, 34 |
| Fnu4HI | GCNGC | 1 cut(s) | 237 |
| FokI | GGATG | 1 cut(s) | 332 |
| Fsp4HI | GCNGC | 1 cut(s) | 237 |
| FspBI | CTAG | 2 cut(s) | 56, 123 |
| GluI | GCNGC | 1 cut(s) | 237 |
| HaeIII | GGCC | 1 cut(s) | 173 |
| Hin1II | CATG | 2 cut(s) | 31, 38 |
| HinfI | GANTC | 3 cut(s) | 38, 187, 256 |
| Hpy188I | TCNGA | 2 cut(s) | 79, 255 |
| Hpy188III | TCNNGA | 2 cut(s) | 212, 260 |
| Hpy99I | CGWCG | 1 cut(s) | 18 |
| HpyCH4III | ACNGT | 1 cut(s) | 343 |
| HpyCH4V | TGCA | 4 cut(s) | 34, 98, 272, 302 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 233 |
| HpyF3I | CTNAG | 3 cut(s) | 156, 210, 252 |
| Hsp92II | CATG | 2 cut(s) | 31, 38 |
| Kzo9I | GATC | 1 cut(s) | 74 |
| LpnPI | CCDG | 7 cut(s) | 53, 62, 165, 197, 269, 273, 312 |
| Lsp1109I | GCAGC | 1 cut(s) | 223 |
| LweI | GCATC | 1 cut(s) | 107 |
| MaeI | CTAG | 2 cut(s) | 56, 123 |
| MalI | GATC | 1 cut(s) | 76 |
| MboI | GATC | 1 cut(s) | 74 |
| MluCI | AATT | 4 cut(s) | 143, 219, 247, 312 |
| MlyI | GAGTC | 3 cut(s) | 32, 181, 250 |
| MnlI | CCTC | 6 cut(s) | 106, 109, 112, 151, 169, 316 |
| MseI | TTAA | 2 cut(s) | 222, 346 |
| MspA1I | CMGCKG | 1 cut(s) | 155 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 233 |
| NdeII | GATC | 1 cut(s) | 74 |
| NlaIII | CATG | 2 cut(s) | 31, 38 |
| NmeAIII | GCCGAG | 1 cut(s) | 199 |
| PkrI | GCNGC | 1 cut(s) | 238 |
| PleI | GAGTC | 3 cut(s) | 32, 181, 250 |
| PpsI | GAGTC | 3 cut(s) | 32, 181, 250 |
| PshBI | ATTAAT | 1 cut(s) | 222 |
| PspPI | GGNCC | 1 cut(s) | 214 |
| PstI | CTGCAG | 1 cut(s) | 304 |
| PvuII | CAGCTG | 1 cut(s) | 155 |
| SaqAI | TTAA | 2 cut(s) | 222, 346 |
| SatI | GCNGC | 1 cut(s) | 237 |
| Sau3AI | GATC | 1 cut(s) | 74 |
| Sau96I | GGNCC | 1 cut(s) | 214 |
| SchI | GAGTC | 3 cut(s) | 32, 181, 250 |
| SetI | ASST | 6 cut(s) | 54, 132, 157, 270, 292, 297 |
| SfaNI | GCATC | 1 cut(s) | 107 |
| SfcI | CTRYAG | 1 cut(s) | 300 |
| SinI | GGWCC | 1 cut(s) | 214 |
| Sse9I | AATT | 4 cut(s) | 143, 219, 247, 312 |
| SspMI | CTAG | 2 cut(s) | 56, 123 |
| TaaI | ACNGT | 1 cut(s) | 343 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 4 cut(s) | 143, 219, 247, 312 |
| Tru1I | TTAA | 2 cut(s) | 222, 346 |
| Tru9I | TTAA | 2 cut(s) | 222, 346 |
| TseI | GCWGC | 1 cut(s) | 236 |
| TspGWI | ACGGA | 1 cut(s) | 179 |
| VpaK11BI | GGWCC | 1 cut(s) | 214 |
| VspI | ATTAAT | 1 cut(s) | 222 |
| XapI | RAATTY | 3 cut(s) | 143, 247, 312 |
| XspI | CTAG | 2 cut(s) | 56, 123 |