Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0017803

Physical Location & Seq

Genomic Coordinates Forward (+)

14852459 .. 14859590

Gene Structure 7132 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007240

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCTCGAAACCGAAGTCGAGAGTTTTTGCTCTCTCTAGATTCATATTTCCCAACTGCCTTACTCTTACCAACATCCTCTTTCCTGGTGTCGTCGACCCCGCAATGCTATAAGGTTGTAGCTCCTGTCAAAATGACACTTGAAATATATGTAATGTGTGTAGTACCAATAAGTGCCTTCTTTGCTTCAAGTCTTTGGTTTGGAAACACTGGTTACCTGCATATTTCTGGGGCTTTCATCCAAATGCTCAAAGCTCTAAAGTCTATCATAAGTCATAACCAGGCTAAAGATATTGGTTATGCAATAGCGTTGTGTGGTGCTGTCATTTACAACTTCATAAAGGTTAAGGATGTGTGTGCATCTGCATCTCAGCTGACAATTGACACTATTCCAGACAGAATATCGAAGGATTGGAAGTTGGAGAAAAAACCAGCTTCTAGTTTTGAGAGATTGGAAGCAAAAACTTTGTTTGCATCTAAAGAAGTTGAGGAGGAGGTTAGAAAGGTATCCCCAAAGAAATTTGTGCCAGCTGAGGATACGGAAATGGCCGAGGAACAACAGACTCCAAAAGTGGTTGCCCCCACTCGGGACCAAATTAATGCTATCAAGGCTGCCATGGTGAATTCTCAGACTCTTGAAGAGGTCGCAAGACTTGAACAGGCACTGAAGTCAGGTCAGCTTCCTGCAGATTTGAAAATTTTGGATGAGGATACTCCAGTGAATACTGTTAAAGACAAGGATGATGAAATGGCCGTAACTAATGAAATTGAGGCCAATGTTGAAGTAAAAGATGTGGAGGAACAGAAGAACAATGAAGCAGAATCAATGGATCAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015030 GO:0016070 GO:0016071 GO:0016604 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LRR_9

Protein Analysis

280

Amino Acids

31.06

Weight (kDa)

4.97

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017803)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427471
rosa_laevigata	RLG00000007234 RLG00000007237 RLG00000007240
rosa_multiflora	Rmu_sc0000603.1_g000013
rosa_roxburghii	Rroxscaffold_5G00369120
rosa_rugosa	Rorug04G0208500 Rorug04G0208600
rosa_samantha	Rh4CG295400 Rh4DG277800 Rh4DG283200
rosa_wichuraiana	Rw4G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	225
AccI	GTMKAC	1 cut(s)	95
AciI	CCGC	1 cut(s)	101
AclWI	GGATC	1 cut(s)	837
AcoI	YGGCCR	2 cut(s)	546, 750
AcsI	RAATTY	3 cut(s)	518, 622, 696
AcuI	CTGAAG	1 cut(s)	686
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	2 cut(s)	585, 586
AgsI	TTSAA	6 cut(s)	143, 189, 638, 656, 694, 782
AjnI	CCWGG	2 cut(s)	84, 279
AluBI	AGCT	6 cut(s)	122, 254, 373, 434, 530, 679
AluI	AGCT	6 cut(s)	122, 254, 373, 434, 530, 679
AlwI	GGATC	1 cut(s)	837
AlwNI	CAGNNNCTG	1 cut(s)	664
Ama87I	CYCGRG	1 cut(s)	585
AoxI	GGCC	3 cut(s)	546, 750, 771
ApeKI	GCWGC	1 cut(s)	611
ApoI	RAATTY	3 cut(s)	518, 622, 696
ArsI	GACNNNNNNTTYG	1 cut(s)	33
AseI	ATTAAT	1 cut(s)	597
AspS9I	GGNCC	1 cut(s)	589
AsuHPI	GGTGA	1 cut(s)	631
AvaI	CYCGRG	1 cut(s)	585
AvaII	GGWCC	1 cut(s)	589
BaeI	ACNNNNGTAYC	2 cut(s)	702, 735
BbvCI	CCTCAGC	1 cut(s)	531
BbvI	GCAGC	1 cut(s)	598
BceAI	ACGGC	1 cut(s)	737
BciT130I	CCWGG	2 cut(s)	86, 281
BciVI	GTATCC	3 cut(s)	517, 529, 703
BfaI	CTAG	2 cut(s)	38, 438
BfmI	CTRYAG	1 cut(s)	684
BfuAI	ACCTGC	1 cut(s)	225
BfuI	GTATCC	3 cut(s)	517, 529, 703
BisI	GCNGC	1 cut(s)	612
BlsI	GCNGC	1 cut(s)	613
Bme1390I	CCNGG	2 cut(s)	86, 281
Bme18I	GGWCC	1 cut(s)	589
BmeT110I	CYCGRG	1 cut(s)	585
BmgT120I	GGNCC	1 cut(s)	589
BmiI	GGNNCC	1 cut(s)	590
BmrFI	CCNGG	2 cut(s)	86, 281
BmsI	GCATC	3 cut(s)	368, 374, 482
BpmI	CTGGAG	1 cut(s)	699
Bpu10I	CCTNAGC	1 cut(s)	531
BsaJI	CCNNGG	2 cut(s)	549, 615
Bsc4I	CCNNNNNNNGG	2 cut(s)	585, 586
Bse1I	ACTGG	2 cut(s)	214, 716
Bse3DI	GCAATG	1 cut(s)	110
BseBI	CCWGG	2 cut(s)	86, 281
BseDI	CCNNGG	2 cut(s)	549, 615
BseGI	GGATG	5 cut(s)	74, 237, 355, 709, 745
BseLI	CCNNNNNNNGG	2 cut(s)	585, 586
BseMI	GCAATG	1 cut(s)	110
BseMII	CTCAG	3 cut(s)	383, 522, 641
BseNI	ACTGG	2 cut(s)	214, 716
BseRI	GAGGAG	2 cut(s)	503, 506
BseXI	GCAGC	1 cut(s)	598
BshFI	GGCC	3 cut(s)	548, 752, 773
BsiHKCI	CYCGRG	1 cut(s)	585
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	2 cut(s)	585, 586
BsmFI	GGGAC	1 cut(s)	602
BsnI	GGCC	3 cut(s)	548, 752, 773
BsoBI	CYCGRG	1 cut(s)	585
Bsp143I	GATC	1 cut(s)	829
Bsp19I	CCATGG	1 cut(s)	615
BspACI	CCGC	1 cut(s)	101
BspANI	GGCC	3 cut(s)	548, 752, 773
BspCNI	CTCAG	3 cut(s)	382, 523, 640
BspLI	GGNNCC	1 cut(s)	590
BspMAI	CTGCAG	1 cut(s)	688
BspMI	ACCTGC	1 cut(s)	225
BspPI	GGATC	1 cut(s)	837
BsrDI	GCAATG	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	214, 716
BssECI	CCNNGG	2 cut(s)	549, 615
BssMI	GATC	1 cut(s)	829
BssT1I	CCWWGG	1 cut(s)	615
Bst2UI	CCWGG	2 cut(s)	86, 281
Bst4CI	ACNGT	1 cut(s)	727
Bst6I	CTCTTC	1 cut(s)	633
BstC8I	GCNNGC	1 cut(s)	528
BstDEI	CTNAG	3 cut(s)	369, 531, 627
BstDSI	CCRYGG	1 cut(s)	615
BstEII	GGTNACC	1 cut(s)	212
BstF5I	GGATG	5 cut(s)	74, 237, 355, 709, 745
BstKTI	GATC	1 cut(s)	832
BstMBI	GATC	1 cut(s)	829
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 608
BstNI	CCWGG	2 cut(s)	86, 281
BstPI	GGTNACC	1 cut(s)	212
BstSCI	CCNGG	2 cut(s)	84, 279
BstSFI	CTRYAG	1 cut(s)	684
BstV1I	GCAGC	1 cut(s)	598
BsuI	GTATCC	3 cut(s)	517, 529, 703
BsuRI	GGCC	3 cut(s)	548, 752, 773
BtgI	CCRYGG	1 cut(s)	615
BtsCI	GGATG	5 cut(s)	74, 237, 355, 709, 745
BtsIMutI	CAGTG	3 cut(s)	207, 662, 723
BveI	ACCTGC	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	528
CaiI	CAGNNNCTG	1 cut(s)	664
Cfr13I	GGNCC	1 cut(s)	589
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	1 cut(s)	616
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	3 cut(s)	369, 531, 627
DpnI	GATC	1 cut(s)	831
DpnII	GATC	1 cut(s)	829
EaeI	YGGCCR	2 cut(s)	546, 750
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
Eco130I	CCWWGG	1 cut(s)	615
Eco47I	GGWCC	1 cut(s)	589
Eco57I	CTGAAG	1 cut(s)	686
Eco88I	CYCGRG	1 cut(s)	585
Eco91I	GGTNACC	1 cut(s)	212
EcoO65I	GGTNACC	1 cut(s)	212
EcoRI	GAATTC	1 cut(s)	622
EcoRII	CCWGG	2 cut(s)	84, 279
EcoT14I	CCWWGG	1 cut(s)	615
ErhI	CCWWGG	1 cut(s)	615
FaeI	CATG	1 cut(s)	619
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	1 cut(s)	615
FauI	CCCGC	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	95
Fnu4HI	GCNGC	1 cut(s)	612
FokI	GGATG	5 cut(s)	61, 224, 362, 716, 752
Fsp4HI	GCNGC	1 cut(s)	612
FspBI	CTAG	2 cut(s)	38, 438
GluI	GCNGC	1 cut(s)	612
GsuI	CTGGAG	1 cut(s)	699
HaeIII	GGCC	3 cut(s)	548, 752, 773
Hin1II	CATG	1 cut(s)	619
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HinfI	GANTC	4 cut(s)	41, 562, 631, 821
HphI	GGTGA	1 cut(s)	631
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	1 cut(s)	630
Hpy188III	TCNNGA	6 cut(s)	20, 38, 392, 587, 635, 833
Hpy8I	GTNNAC	1 cut(s)	96
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	2 cut(s)	187, 400
HpyCH4III	ACNGT	1 cut(s)	727
HpyCH4V	TGCA	6 cut(s)	220, 302, 359, 365, 473, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 608
HpyF3I	CTNAG	3 cut(s)	369, 531, 627
Hsp92II	CATG	1 cut(s)	619
Kzo9I	GATC	1 cut(s)	829
LmnI	GCTCC	1 cut(s)	127
Lsp1109I	GCAGC	1 cut(s)	598
LweI	GCATC	3 cut(s)	368, 374, 482
MaeI	CTAG	2 cut(s)	38, 438
MaeIII	GTNAC	2 cut(s)	212, 754
MalI	GATC	1 cut(s)	831
MboI	GATC	1 cut(s)	829
MboII	GAAGA	2 cut(s)	650, 817
MfeI	CAATTG	1 cut(s)	378
MluCI	AATT	6 cut(s)	378, 518, 594, 622, 696, 765
MlyI	GAGTC	2 cut(s)	556, 625
MmeI	TCCRAC	1 cut(s)	399
MseI	TTAA	3 cut(s)	345, 597, 729
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	2 cut(s)	373, 530
MspR9I	CCNGG	2 cut(s)	86, 281
MunI	CAATTG	1 cut(s)	378
MvaI	CCWGG	2 cut(s)	86, 281
MwoI	GCNNNNNNNGC	2 cut(s)	182, 608
NcoI	CCATGG	1 cut(s)	615
NdeII	GATC	1 cut(s)	829
NlaIII	CATG	1 cut(s)	619
NlaIV	GGNNCC	1 cut(s)	590
NmeAIII	GCCGAG	1 cut(s)	574
PfeI	GAWTC	2 cut(s)	41, 821
PkrI	GCNGC	1 cut(s)	613
PleI	GAGTC	2 cut(s)	556, 625
PpsI	GAGTC	2 cut(s)	556, 625
PshBI	ATTAAT	1 cut(s)	597
Psp6I	CCWGG	2 cut(s)	84, 279
PspEI	GGTNACC	1 cut(s)	212
PspGI	CCWGG	2 cut(s)	84, 279
PspN4I	GGNNCC	1 cut(s)	590
PspPI	GGNCC	1 cut(s)	589
PstI	CTGCAG	1 cut(s)	688
PstNI	CAGNNNCTG	1 cut(s)	664
PvuII	CAGCTG	2 cut(s)	373, 530
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	242
SalI	GTCGAC	1 cut(s)	94
SaqAI	TTAA	3 cut(s)	345, 597, 729
SatI	GCNGC	1 cut(s)	612
Sau3AI	GATC	1 cut(s)	829
Sau96I	GGNCC	1 cut(s)	589
SchI	GAGTC	2 cut(s)	556, 625
ScrFI	CCNGG	2 cut(s)	86, 281
SfaNI	GCATC	3 cut(s)	368, 374, 482
SfcI	CTRYAG	1 cut(s)	684
SinI	GGWCC	1 cut(s)	589
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	6 cut(s)	378, 518, 594, 622, 696, 765
SsiI	CCGC	1 cut(s)	101
SspMI	CTAG	2 cut(s)	38, 438
StyD4I	CCNGG	2 cut(s)	84, 279
StyI	CCWWGG	1 cut(s)	615
TaaI	ACNGT	1 cut(s)	727
TaqI	TCGA	4 cut(s)	7, 19, 95, 404
TasI	AATT	6 cut(s)	378, 518, 594, 622, 696, 765
TfiI	GAWTC	2 cut(s)	41, 821
Tru1I	TTAA	3 cut(s)	345, 597, 729
Tru9I	TTAA	3 cut(s)	345, 597, 729
TscAI	CASTG	3 cut(s)	214, 669, 723
TseI	GCWGC	1 cut(s)	611
TspDTI	ATGAA	6 cut(s)	33, 226, 325, 759, 777, 828
TspGWI	ACGGA	1 cut(s)	554
TspRI	CASTG	3 cut(s)	214, 669, 723
VpaK11BI	GGWCC	1 cut(s)	589
VspI	ATTAAT	1 cut(s)	597
XapI	RAATTY	3 cut(s)	518, 622, 696
XbaI	TCTAGA	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	95
XspI	CTAG	2 cut(s)	38, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.