Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0017803

Physical Location & Seq

Genomic Coordinates Reverse (-)

49562024 .. 49564045

Gene Structure 2022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G023790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCCGAGGAACAACAGACTCCAAAAGTGGTTGCCCCCACTCAGGACCAAATTAATGCTATCAAGGTAATCATAGCTGCCATAGTGAATTCTCAGACTCTTGAAGAGGTTGCAAGACTTGAACAGGCACTGAAGTCAGGTCAGCTTCCTGCAGATTTGAAAATTTTGGATGAGGATACTCCAATGAATACTGTTAAAGACAAGGATGATGAAATGGCTGTAACTAATGAAAATGAGGCCAATGTTGAAGTAAAAGATGTGGAGGAACAGAAGAACAATGAAGCAGAATCAATGGATCAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015030 GO:0016070 GO:0016071 GO:0016604 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LRR_9

Protein Analysis

101

Amino Acids

11.21

Weight (kDa)

4.13

Isoelectric Point (pI)

32.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017803)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427471
rosa_laevigata	RLG00000007234 RLG00000007237 RLG00000007240
rosa_multiflora	Rmu_sc0000603.1_g000013
rosa_roxburghii	Rroxscaffold_5G00369120
rosa_rugosa	Rorug04G0208500 Rorug04G0208600
rosa_samantha	Rh4CG295400 Rh4DG277800 Rh4DG283200
rosa_wichuraiana	Rw4G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	303
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	88, 162
AcuI	CTGAAG	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	4 cut(s)	104, 122, 160, 248
AluBI	AGCT	2 cut(s)	77, 145
AluI	AGCT	2 cut(s)	77, 145
AlwI	GGATC	1 cut(s)	303
AlwNI	CAGNNNCTG	1 cut(s)	130
AoxI	GGCC	2 cut(s)	3, 237
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	2 cut(s)	88, 162
AseI	ATTAAT	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	64
BciVI	GTATCC	1 cut(s)	169
BfmI	CTRYAG	1 cut(s)	150
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	2 cut(s)	175, 211
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	2 cut(s)	56, 107
BseXI	GCAGC	1 cut(s)	64
BshFI	GGCC	2 cut(s)	5, 239
BslI	CCNNNNNNNGG	1 cut(s)	43
BsnI	GGCC	2 cut(s)	5, 239
Bsp143I	GATC	1 cut(s)	295
BspANI	GGCC	2 cut(s)	5, 239
BspCNI	CTCAG	2 cut(s)	55, 106
BspMAI	CTGCAG	1 cut(s)	154
BspPI	GGATC	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	99
BstDEI	CTNAG	2 cut(s)	42, 93
BstF5I	GGATG	2 cut(s)	175, 211
BstKTI	GATC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	5, 239
BtsCI	GGATG	2 cut(s)	175, 211
BtsIMutI	CAGTG	1 cut(s)	128
CaiI	CAGNNNCTG	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	46
CviJI	RGCY	5 cut(s)	5, 77, 145, 218, 239
CviKI_1	RGCY	5 cut(s)	5, 77, 145, 218, 239
DdeI	CTNAG	2 cut(s)	42, 93
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	88
FaiI	YATR	2 cut(s)	74, 83
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	2 cut(s)	182, 218
Fsp4HI	GCNGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	5, 239
HinfI	GANTC	3 cut(s)	19, 97, 287
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	3 cut(s)	44, 101, 299
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	2 cut(s)	113, 152
HpyF3I	CTNAG	2 cut(s)	42, 93
Kzo9I	GATC	1 cut(s)	295
LpnPI	CCDG	5 cut(s)	29, 110, 123, 162, 284
Lsp1109I	GCAGC	1 cut(s)	64
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	2 cut(s)	116, 283
MluCI	AATT	3 cut(s)	51, 88, 162
MlyI	GAGTC	2 cut(s)	13, 91
MnlI	CCTC	4 cut(s)	100, 166, 229, 256
MseI	TTAA	2 cut(s)	54, 195
NdeII	GATC	1 cut(s)	295
NmeAIII	GCCGAG	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	2 cut(s)	13, 91
PpsI	GAGTC	2 cut(s)	13, 91
PshBI	ATTAAT	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	154
PstNI	CAGNNNCTG	1 cut(s)	130
SaqAI	TTAA	2 cut(s)	54, 195
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	2 cut(s)	13, 91
SetI	ASST	5 cut(s)	69, 79, 111, 142, 147
SfcI	CTRYAG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	46
Sse9I	AATT	3 cut(s)	51, 88, 162
TaaI	ACNGT	1 cut(s)	193
TasI	AATT	3 cut(s)	51, 88, 162
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	2 cut(s)	54, 195
Tru9I	TTAA	2 cut(s)	54, 195
TscAI	CASTG	1 cut(s)	135
TseI	GCWGC	1 cut(s)	77
TspDTI	ATGAA	4 cut(s)	200, 225, 243, 294
TspRI	CASTG	1 cut(s)	135
VpaK11BI	GGWCC	1 cut(s)	46
VspI	ATTAAT	1 cut(s)	54
XapI	RAATTY	2 cut(s)	88, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.