Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0017803

Physical Location & Seq

Genomic Coordinates Reverse (-)

49810299 .. 49819269

Gene Structure 8971 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG277800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAAACTTGAAATATATGTAATGTGTGTAATACCAATAAGTGCCTTCTTTGCTTCAAGTCTTTGGTTTGGAAACACTGGTTACTTGCATATTTCTGGGGCTTTCATCCAAATGCTCAAAGCTCTAAAATCCAACTTATGTGGCACTGATAAACCAAGGTGCGACGTGGTCTCAAACATGTTGCTGGTCAGTGTTGGAGTTGTCTTTTCCTTGTACCGGGAGATTTATTTTAACGTAGTTGGTACACTTTCCCAGGTTACGGGCAACTTTGCAGAAGCTCTTAGGCTGGTCTTAACACAAGTCCTTCTGCAGAAGAAGGGTTTGACTTTAAATCCAATCACCAGCTTATACCATATAGCTCCATGCAGTTTCACAAATTCAGTTCAGCTTCTGGATTTTTTCTCCAATGCTCTATGTGCTTTGGCTTTGAACTTCTCGATATTCTTAGTAATTGGTAGAACTGAAGCAGTTACCATCCGAGTTGCTGGTGTTTTAAAAGACTGGATTTTGATTGCCCTAGCTTTCAATTGTTATATTTTCAGATTGGTCATTTACAACTACATAAAGGTTAAGGATGTGCGTGCATCTGCATCTCAGCTGCCTATTGACACTATTCCAGACAGAATATCAAAGGAGAGATTGGAAGCAAAAACTTTGTTTGCATCTAAAGAAGTTGAGGAGGAGGCTAGAAAGGTATCCCCAAAGAAATTTGTGCCAGCTGAGGATACGGAAATGGCCGAGGAACAACAGACTCCAAAAGTGGTTGCCCCCACTCAGGACCAAATTAATGCTATCAAGGCTGCCATAGTGAATTCTCAGACTCTTGAAGAGGTTGCAAGACTTGAACAGGCACTGAAGTCAGGTCAGCTTCCTGCAGATTTGAAAATTTTGGATGAGGATACTCCAATGAATACTGTTAAAGACAAGGATGATGAAATGGCTGTAACTAATGAAAATGAGGCCAATGTTGAAGTAAAAGATGTGGAGGAACAGAAGAACAATGAAGCAGAATCAATGGATCAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

342

Amino Acids

38.09

Weight (kDa)

4.99

Isoelectric Point (pI)

22.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017803)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427471
rosa_laevigata	RLG00000007234 RLG00000007237 RLG00000007240
rosa_multiflora	Rmu_sc0000603.1_g000013
rosa_roxburghii	Rroxscaffold_5G00369120
rosa_rugosa	Rorug04G0208500 Rorug04G0208600
rosa_samantha	Rh4CG295400 Rh4DG277800 Rh4DG283200
rosa_wichuraiana	Rw4G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	1026
AcoI	YGGCCR	1 cut(s)	735
AcsI	RAATTY	4 cut(s)	376, 707, 811, 885
AcuI	CTGAAG	2 cut(s)	483, 875
AfaI	GTAC	2 cut(s)	215, 244
AfiI	CCNNNNNNNGG	3 cut(s)	216, 259, 775
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	8 cut(s)	11, 57, 430, 526, 827, 845, 883, 971
AjiI	CACGTC	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	9 cut(s)	122, 278, 345, 359, 388, 521, 598, 719, 868
AluI	AGCT	9 cut(s)	122, 278, 345, 359, 388, 521, 598, 719, 868
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	1026
AlwNI	CAGNNNCTG	2 cut(s)	391, 853
AoxI	GGCC	2 cut(s)	735, 960
ApeKI	GCWGC	2 cut(s)	598, 800
ApoI	RAATTY	4 cut(s)	376, 707, 811, 885
AseI	ATTAAT	1 cut(s)	786
AspS9I	GGNCC	1 cut(s)	778
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	331
AvaII	GGWCC	1 cut(s)	778
BbvCI	CCTCAGC	1 cut(s)	720
BbvI	GCAGC	2 cut(s)	585, 787
BccI	CCATC	1 cut(s)	482
BciT130I	CCWGG	1 cut(s)	254
BciVI	GTATCC	3 cut(s)	706, 718, 892
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	2 cut(s)	518, 687
BfmI	CTRYAG	2 cut(s)	308, 873
BfuI	GTATCC	3 cut(s)	706, 718, 892
BisI	GCNGC	2 cut(s)	599, 801
BlsI	GCNGC	2 cut(s)	600, 802
Bme1390I	CCNGG	2 cut(s)	218, 254
Bme18I	GGWCC	1 cut(s)	778
BmgBI	CACGTC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	778
BmrFI	CCNGG	2 cut(s)	218, 254
BmsI	GCATC	3 cut(s)	593, 599, 671
Bpu10I	CCTNAGC	1 cut(s)	720
BpuMI	CCSGG	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	175
BsaJI	CCNNGG	3 cut(s)	155, 252, 738
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 259, 775
Bse1I	ACTGG	2 cut(s)	82, 506
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	3 cut(s)	155, 252, 738
BseGI	GGATG	5 cut(s)	105, 474, 580, 898, 934
BseLI	CCNNNNNNNGG	3 cut(s)	216, 259, 775
BseMII	CTCAG	4 cut(s)	608, 711, 788, 830
BseNI	ACTGG	2 cut(s)	82, 506
BseRI	GAGGAG	2 cut(s)	692, 695
BseXI	GCAGC	2 cut(s)	585, 787
BshFI	GGCC	2 cut(s)	737, 962
BsiSI	CCGG	1 cut(s)	217
BslI	CCNNNNNNNGG	3 cut(s)	216, 259, 775
BsmAI	GTCTC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	737, 962
Bso31I	GGTCTC	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	1018
BspANI	GGCC	2 cut(s)	737, 962
BspCNI	CTCAG	4 cut(s)	607, 712, 787, 829
BspMAI	CTGCAG	2 cut(s)	312, 877
BspPI	GGATC	1 cut(s)	1026
BspTNI	GGTCTC	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	82, 506
BssECI	CCNNGG	3 cut(s)	155, 252, 738
BssMI	GATC	1 cut(s)	1018
BssT1I	CCWWGG	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	916
Bst6I	CTCTTC	1 cut(s)	822
BstC8I	GCNNGC	2 cut(s)	582, 717
BstDEI	CTNAG	6 cut(s)	281, 445, 594, 720, 774, 816
BstF5I	GGATG	5 cut(s)	105, 474, 580, 898, 934
BstKTI	GATC	1 cut(s)	1021
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	1018
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 416, 797
BstNI	CCWGG	1 cut(s)	254
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	216, 252
BstSFI	CTRYAG	2 cut(s)	308, 873
BstV1I	GCAGC	2 cut(s)	585, 787
BsuI	GTATCC	3 cut(s)	706, 718, 892
BsuRI	GGCC	2 cut(s)	737, 962
BtrI	CACGTC	1 cut(s)	166
BtsCI	GGATG	5 cut(s)	105, 474, 580, 898, 934
BtsIMutI	CAGTG	4 cut(s)	75, 144, 196, 851
Cac8I	GCNNGC	2 cut(s)	582, 717
CaiI	CAGNNNCTG	2 cut(s)	391, 853
Cfr13I	GGNCC	1 cut(s)	778
Csp6I	GTAC	2 cut(s)	214, 243
CspCI	CAANNNNNGTGG	2 cut(s)	121, 156
CviAII	CATG	2 cut(s)	178, 363
CviQI	GTAC	2 cut(s)	214, 243
DdeI	CTNAG	6 cut(s)	281, 445, 594, 720, 774, 816
DpnI	GATC	1 cut(s)	1020
DpnII	GATC	1 cut(s)	1018
DraI	TTTAAA	2 cut(s)	330, 495
EaeI	YGGCCR	1 cut(s)	735
Eam1104I	CTCTTC	1 cut(s)	822
EarI	CTCTTC	1 cut(s)	822
Eco130I	CCWWGG	1 cut(s)	155
Eco31I	GGTCTC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	778
Eco57I	CTGAAG	2 cut(s)	483, 875
EcoRI	GAATTC	1 cut(s)	811
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	2 cut(s)	181, 366
FatI	CATG	2 cut(s)	177, 362
Fnu4HI	GCNGC	2 cut(s)	599, 801
FokI	GGATG	5 cut(s)	92, 461, 587, 905, 941
Fsp4HI	GCNGC	2 cut(s)	599, 801
FspBI	CTAG	2 cut(s)	518, 687
GluI	GCNGC	2 cut(s)	599, 801
HaeIII	GGCC	2 cut(s)	737, 962
HapII	CCGG	1 cut(s)	217
Hin1II	CATG	2 cut(s)	181, 366
HinfI	GANTC	3 cut(s)	751, 820, 1010
HpaII	CCGG	1 cut(s)	217
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	3 cut(s)	479, 542, 819
Hpy188III	TCNNGA	6 cut(s)	392, 436, 617, 776, 824, 1022
Hpy8I	GTNNAC	1 cut(s)	245
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	3 cut(s)	55, 310, 314
HpyCH4III	ACNGT	1 cut(s)	916
HpyCH4IV	ACGT	2 cut(s)	165, 234
HpyCH4V	TGCA	9 cut(s)	88, 272, 310, 366, 584, 590, 662, 836, 875
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 416, 797
HpyF3I	CTNAG	6 cut(s)	281, 445, 594, 720, 774, 816
HpySE526I	ACGT	2 cut(s)	165, 234
Hsp92II	CATG	2 cut(s)	181, 366
Kzo9I	GATC	1 cut(s)	1018
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	2 cut(s)	585, 787
LweI	GCATC	3 cut(s)	593, 599, 671
MaeI	CTAG	2 cut(s)	518, 687
MaeII	ACGT	2 cut(s)	165, 234
MaeIII	GTNAC	4 cut(s)	80, 256, 469, 943
MalI	GATC	1 cut(s)	1020
MboI	GATC	1 cut(s)	1018
MboII	GAAGA	3 cut(s)	325, 839, 1006
MfeI	CAATTG	1 cut(s)	526
MluCI	AATT	7 cut(s)	376, 450, 526, 707, 783, 811, 885
MlyI	GAGTC	2 cut(s)	745, 814
MmeI	TCCRAC	2 cut(s)	156, 175
MnlI	CCTC	9 cut(s)	670, 673, 676, 715, 733, 823, 889, 952, 979
MseI	TTAA	7 cut(s)	231, 293, 329, 494, 570, 786, 918
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	2 cut(s)	598, 719
MspI	CCGG	1 cut(s)	217
MspR9I	CCNGG	2 cut(s)	218, 254
MunI	CAATTG	1 cut(s)	526
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	3 cut(s)	50, 416, 797
NciI	CCSGG	1 cut(s)	218
NdeII	GATC	1 cut(s)	1018
NlaIII	CATG	2 cut(s)	181, 366
NmeAIII	GCCGAG	1 cut(s)	763
NspI	RCATGY	1 cut(s)	181
PciI	ACATGT	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	1010
PflFI	GACNNNGTC	1 cut(s)	167
PkrI	GCNGC	2 cut(s)	600, 802
PleI	GAGTC	2 cut(s)	745, 814
PpsI	GAGTC	2 cut(s)	745, 814
PscI	ACATGT	1 cut(s)	177
PshBI	ATTAAT	1 cut(s)	786
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	778
PstI	CTGCAG	2 cut(s)	312, 877
PstNI	CAGNNNCTG	2 cut(s)	391, 853
PsyI	GACNNNGTC	1 cut(s)	167
PvuII	CAGCTG	2 cut(s)	598, 719
RsaI	GTAC	2 cut(s)	215, 244
RsaNI	GTAC	2 cut(s)	214, 243
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	7 cut(s)	231, 293, 329, 494, 570, 786, 918
SatI	GCNGC	2 cut(s)	599, 801
Sau3AI	GATC	1 cut(s)	1018
Sau96I	GGNCC	1 cut(s)	778
SchI	GAGTC	2 cut(s)	745, 814
ScrFI	CCNGG	2 cut(s)	218, 254
SfaNI	GCATC	3 cut(s)	593, 599, 671
SfcI	CTRYAG	2 cut(s)	308, 873
SinI	GGWCC	1 cut(s)	778
SmiMI	CAYNNNNRTG	1 cut(s)	110
Sse9I	AATT	7 cut(s)	376, 450, 526, 707, 783, 811, 885
SspMI	CTAG	2 cut(s)	518, 687
StyD4I	CCNGG	2 cut(s)	216, 252
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	916
TaiI	ACGT	2 cut(s)	168, 237
TaqI	TCGA	1 cut(s)	437
TasI	AATT	7 cut(s)	376, 450, 526, 707, 783, 811, 885
TfiI	GAWTC	1 cut(s)	1010
Tru1I	TTAA	7 cut(s)	231, 293, 329, 494, 570, 786, 918
Tru9I	TTAA	7 cut(s)	231, 293, 329, 494, 570, 786, 918
TscAI	CASTG	4 cut(s)	82, 151, 196, 858
TseI	GCWGC	2 cut(s)	598, 800
TspDTI	ATGAA	6 cut(s)	17, 94, 923, 948, 966, 1017
TspGWI	ACGGA	1 cut(s)	743
TspRI	CASTG	4 cut(s)	82, 151, 196, 858
Tth111I	GACNNNGTC	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	778
VspI	ATTAAT	1 cut(s)	786
XapI	RAATTY	4 cut(s)	376, 707, 811, 885
XceI	RCATGY	1 cut(s)	181
XspI	CTAG	2 cut(s)	518, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.