RchiOBHm_Chr4g0436441

proline-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
59733622 .. 59738200
4579 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40477

Sequence Viewer

Length: 2307 bp
ATGGCAACCACATCGCCATCTCCGAACTCATCTCCTTCAGCTGTGCCACCAGCTTCTAGTGCTAGTTCCACACCACCACCACAGCCCAATGTGGAATCACCAGATTCCTCAGACACTACAACTCAATCTCCACCGCCTGATGTTCCATCAGCTCCTCCTCCAACTGCATCATCACCCCCTCCAATTCCATCCTCCCCTTCCGTACCTACACCATCACCTCCAGTGAATCAACAATCTGATCCACCAGCCTCACCGCCACTGTCTTCTTCATCCAATGTGCCTCCACCATCTTCAAATTCTTCACCCCCACCATCATCTGACCCACCAAAGAGTTCACCTTCCCCACCACCACCAACGTCTGATCCACCTGCAAGTTCACCTCCCCCACCACAGCCAGTGAGTTCACCTCCACCACCAACTTCAAGTCCACCTAAGACTTCACCTCCACCTCCATCATCAACGCCGCCCAAAAGTTCACCTCCACCTCCATCATCAACACCGCCCAAAAGTTCACCATCAGAGCCACCTGAGAAATCTCCTCCACCTCCACCAGCAAATCCCCCTGAAACATCACCACCGCCTCCACCAACATCAAAGCCCCCTGAAACGTCACCACCGCCGCCACCAACATCAAAGCCACCTGAGAAATCACCACCACCTCCAGAATCTGAGCCACCCAAAAGCTCACCTCCACCAGCATCAACTCCTCCTAAAAGTTCACCTCCTCCACAGGCATCAGAGCCTCCAAGCAGTTCACCCCCACCTTCAAGCCCCAACCCTCCCCCTCCACCCGGTTCTCAACCAACCCCTGAAGCCCCACCTCCGAAGTCATCAGCTCCACCACCCACAATACGACTCTCACCACCTCCACCCTCAGATGATGCTCCACCACCAACTACTCAAATTCCAAGCCCACCATCAAATATTCCAAGTTCAAACAATTCCAATCCTAATGTACCACCAAGTTCAAATGCCACAAGTAATAGGGGCCTTAGCACTGGAGGTGCAGTGGCAATTAGTGTAGTGGCTGGGATAATAGTGCTTAGCTTCATTGCATTCGCTGTATGGTGCATGAGGAGGAAGCAAAAGAAAAAGGTTTCTGAATTTGGAGGTTATGTTATGCCATCGCCGATGGTATCTTCTCCCCAATCAGATTCATCATCATTCTTGAAGGCACATTCTTCAGCTCCCCTTATAGGAAGTGGTTCTGGTAGTGATTTCGTGAATTCTCCTGCAGAACCGGCAGCAGGCAATTCAAGACCTTGGTTTACTTATGACGAACTAGCTAAGGCTACAAATGGCTTTTCATCTCAGAATCTTTTGGGGGAAGGTGGATTTGGCTCTGTATATAAGGGAATCCTGCCAGATGATAGAGAGGTGGCAGTAAAACAATTGAAAATAGGTGGGAGTCAGGGTGAGAGAGAATTCAAAGCTGAAGTTGAGACCATTAGTCGTGTTCACCACCGCCATTTGGTTTCTTTGGTGGGCTATTGCATTTCTGAGAACCAAAGGCTGCTTGTCTATGAATATGTCTCTAATGATACCCTCTATTTCCATCTTCATGGAGAAGGTAGGTCAGTTCTTGACTGGGCAACACGTGTTAAAGTTGCTGCTGGTGCAGCTCGTGGAATCGCCTATCTTCATGAAGACTGCCATCCTCGCATTATTCACAGGGATATAAAGTCATCAAACATTCTATTAGATAACAACTTTGAAGCTCGGGTTTCAGATTTTGGACTTGCCAAATTGTGTCTGGATGCAAATACACATATAAGTACACGTGTCATGGGAACTTTTGGATATGTGGCCCCTGAGTATGCTTCAAGTGGCAAACTGACTGAGAAATCTGATGTGTACTCATTTGGAGTTGTTCTTCTGGAGTTGATTACTGGACGGAAGGCTGTGGATGCATCCCAACCGTTGGGAGATGAGAGTCTAGTTGAATGGGCTCGACCCTTATTGGGTTATGCTCTTGATAATGAGGAGTTTGAAGGTTTGGTTGATCCAAGGCTTGAGAAGAACTATGTTGAGAGTGAAGTGTTCAGACTGATTGAGATTGCTGCTGCTTGTGTGCGACACTCATCTGCTAAGAGACCACGAATGGGACAGGTTGTTAGAGCTTTCGATGGTATGGCCACCGCCGATTTAACCAATGGAATGAGAGTAGGGGAAAGTGAGACATTCAACTCGGCTCAACAATCAGCTGAAATTAGATTGTTTCGGAGAATGGCATTTGGTAGTCAAAATTACAGTACAGATTTTTTAGCGAAGGTAGCGGGAATGGTAACCCGGTATAGTAAATATTAG

Protein Analysis

768

Amino Acids

80.33

Weight (kDa)

6.07

Isoelectric Point (pI)

83.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 436 - 638 3.4e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 438 - 707 7.1e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 376
Acc36I ACCTGC 1 cut(s) 376
AccB7I CCANNNNNTGG 1 cut(s) 1921
AclWI GGATC 3 cut(s) 233, 356, 1997
AcoI YGGCCR 1 cut(s) 2133
AcsI RAATTY 5 cut(s) 295, 903, 1103, 1225, 1424
AcuI CTGAAG 4 cut(s) 21, 831, 1167, 1455
AcvI CACGTG 2 cut(s) 1598, 1781
AfaI GTAC 5 cut(s) 204, 957, 1777, 1856, 2254
AfiI CCNNNNNNNGG 7 cut(s) 791, 1196, 1247, 1471, 1921, 1961, 2102
AflIII ACRYGT 4 cut(s) 1595, 1597, 1778, 1780
AhdI GACNNNNNGTC 1 cut(s) 1449
AjuI GAANNNNNNNTTGG 2 cut(s) 1320, 1352
Alw26I GTCTC 4 cut(s) 1436, 1537, 2086, 2171
AlwI GGATC 3 cut(s) 233, 356, 1997
AlwNI CAGNNNCTG 1 cut(s) 668
Ama87I CYCGRG 1 cut(s) 1719
AoxI GGCC 3 cut(s) 988, 1806, 2133
ApeKI GCWGC 6 cut(s) 1244, 1513, 1610, 1619, 2060, 2063
ApoI RAATTY 5 cut(s) 295, 903, 1103, 1225, 1424
Asp700I GAANNNNTTC 1 cut(s) 1204
AspS9I GGNCC 2 cut(s) 988, 1807
AsuC2I CCSGG 2 cut(s) 792, 2290
AvaI CYCGRG 1 cut(s) 1719
BalI TGGCCA 1 cut(s) 2135
BanII GRGCYC 1 cut(s) 1951
BauI CACGAG 1 cut(s) 1623
BbrPI CACGTG 2 cut(s) 1598, 1781
BbsI GAAGAC 2 cut(s) 255, 1653
BbvI GCAGC 6 cut(s) 1256, 1500, 1597, 1631, 2047, 2050
BcgI CGANNNNNNTGC 1 cut(s) 28
BcnI CCSGG 2 cut(s) 792, 2290
BcoDI GTCTC 4 cut(s) 1436, 1537, 2086, 2171
BfaI CTAG 4 cut(s) 57, 63, 1283, 1937
BfmI CTRYAG 1 cut(s) 1233
BfuAI ACCTGC 1 cut(s) 376
BisI GCNGC 8 cut(s) 464, 620, 1245, 1514, 1611, 1620, 2061, 2064
BlpI GCTNAGC 1 cut(s) 1043
BlsI GCNGC 8 cut(s) 465, 621, 1246, 1515, 1612, 1621, 2062, 2065
Bme1390I CCNGG 2 cut(s) 792, 2290
BmeRI GACNNNNNGTC 1 cut(s) 1449
BmeT110I CYCGRG 1 cut(s) 1719
BmgT120I GGNCC 2 cut(s) 988, 1807
BmiI GGNNCC 2 cut(s) 989, 1809
BmrFI CCNGG 2 cut(s) 792, 2290
BmrI ACTGGG 1 cut(s) 1597
BmsI GCATC 7 cut(s) 176, 707, 743, 871, 1747, 1897, 1919
BmuI ACTGGG 1 cut(s) 1597
BpiI GAAGAC 2 cut(s) 255, 1653
BplI GAGNNNNNCTC 2 cut(s) 391, 423
BpmI CTGGAG 4 cut(s) 204, 645, 1020, 1898
Bpu10I CCTNAGC 2 cut(s) 992, 1287
Bpu1102I GCTNAGC 1 cut(s) 1043
BpuEI CTTGAG 1 cut(s) 2033
BpuMI CCSGG 2 cut(s) 792, 2290
BsaAI YACGTR 2 cut(s) 1598, 1781
BsaI GGTCTC 2 cut(s) 1436, 2086
BsaJI CCNNGG 2 cut(s) 1262, 2006
Bsc4I CCNNNNNNNGG 7 cut(s) 791, 1196, 1247, 1471, 1921, 1961, 2102
Bse118I RCCGGY 1 cut(s) 1240
Bse1I ACTGG 5 cut(s) 221, 395, 1003, 1592, 1894
Bse3DI GCAATG 1 cut(s) 1050
BseDI CCNNGG 2 cut(s) 1262, 2006
BseGI GGATG 6 cut(s) 188, 269, 1654, 1762, 1910, 1912
BseLI CCNNNNNNNGG 7 cut(s) 791, 1196, 1247, 1471, 1921, 1961, 2102
BseMI GCAATG 1 cut(s) 1050
BseMII CTCAG 9 cut(s) 123, 519, 633, 660, 888, 1325, 1491, 1803, 1830
BseNI ACTGG 5 cut(s) 221, 395, 1003, 1592, 1894
BseRI GAGGAG 7 cut(s) 144, 147, 528, 696, 714, 1090, 1997
BseXI GCAGC 6 cut(s) 1256, 1500, 1597, 1631, 2047, 2050
BseYI CCCAGC 1 cut(s) 1028
BsgI GTGCAG 2 cut(s) 1026, 1638
BshFI GGCC 3 cut(s) 990, 1808, 2135
BsiHKCI CYCGRG 1 cut(s) 1719
BsiSI CCGG 3 cut(s) 792, 1241, 2290
BslFI GGGAC 1 cut(s) 2118
BslI CCNNNNNNNGG 7 cut(s) 791, 1196, 1247, 1471, 1921, 1961, 2102
BsmAI GTCTC 4 cut(s) 1436, 1537, 2086, 2171
BsmFI GGGAC 1 cut(s) 2118
BsmI GAATGC 1 cut(s) 1055
BsnI GGCC 3 cut(s) 990, 1808, 2135
Bso31I GGTCTC 2 cut(s) 1436, 2086
BsoBI CYCGRG 1 cut(s) 1719
Bsp1286I GDGCHC 1 cut(s) 1951
Bsp143I GATC 3 cut(s) 238, 361, 2002
Bsp1720I GCTNAGC 1 cut(s) 1043
BspANI GGCC 3 cut(s) 990, 1808, 2135
BspCNI CTCAG 9 cut(s) 122, 520, 634, 661, 887, 1324, 1492, 1804, 1831
BspHI TCATGA 1 cut(s) 1642
BspLI GGNNCC 2 cut(s) 989, 1809
BspMAI CTGCAG 1 cut(s) 1237
BspMI ACCTGC 1 cut(s) 376
BspPI GGATC 3 cut(s) 233, 356, 1997
BspTNI GGTCTC 2 cut(s) 1436, 2086
BsrDI GCAATG 1 cut(s) 1050
BsrFI RCCGGY 1 cut(s) 1240
BsrI ACTGG 5 cut(s) 221, 395, 1003, 1592, 1894
BssAI RCCGGY 1 cut(s) 1240
BssECI CCNNGG 2 cut(s) 1262, 2006
BssMI GATC 3 cut(s) 238, 361, 2002
BssSI CACGAG 1 cut(s) 1623
BssT1I CCWWGG 2 cut(s) 1262, 2006
Bst2BI CACGAG 1 cut(s) 1623
Bst4CI ACNGT 3 cut(s) 261, 1920, 2252
BstBAI YACGTR 2 cut(s) 1598, 1781
BstC8I GCNNGC 1 cut(s) 1249
BstEII GGTNACC 1 cut(s) 2284
BstF5I GGATG 6 cut(s) 188, 269, 1654, 1762, 1910, 1912
BstKTI GATC 3 cut(s) 241, 364, 2005
BstMAI GTCTC 4 cut(s) 1436, 1537, 2086, 2171
BstMBI GATC 3 cut(s) 238, 361, 2002
BstMWI GCNNNNNNNGC 7 cut(s) 59, 1241, 1616, 1619, 1659, 1907, 2273
BstPI GGTNACC 1 cut(s) 2284
BstSCI CCNGG 2 cut(s) 790, 2288
BstSFI CTRYAG 1 cut(s) 1233
BstV1I GCAGC 6 cut(s) 1256, 1500, 1597, 1631, 2047, 2050
BstV2I GAAGAC 2 cut(s) 255, 1653
BstXI CCANNNNNNTGG 1 cut(s) 1562
BsuRI GGCC 3 cut(s) 990, 1808, 2135
BtgZI GCGATG 1 cut(s) 1110
BtsCI GGATG 6 cut(s) 188, 269, 1654, 1762, 1910, 1912
BtsI GCAGTG 1 cut(s) 1014
BtsIMutI CAGTG 5 cut(s) 228, 257, 402, 996, 1014
BveI ACCTGC 1 cut(s) 376
Cac8I GCNNGC 1 cut(s) 1249
CaiI CAGNNNCTG 1 cut(s) 668
CciI TCATGA 1 cut(s) 1642
Cfr10I RCCGGY 1 cut(s) 1240
Cfr13I GGNCC 2 cut(s) 988, 1807
Csp6I GTAC 5 cut(s) 203, 956, 1776, 1855, 2253
CviAII CATG 4 cut(s) 1072, 1562, 1643, 1786
CviQI GTAC 5 cut(s) 203, 956, 1776, 1855, 2253
DpnI GATC 3 cut(s) 240, 363, 2004
DpnII GATC 3 cut(s) 238, 361, 2002
DriI GACNNNNNGTC 1 cut(s) 1449
EaeI YGGCCR 1 cut(s) 2133
Eam1105I GACNNNNNGTC 1 cut(s) 1449
Eco130I CCWWGG 2 cut(s) 1262, 2006
Eco24I GRGCYC 1 cut(s) 1951
Eco31I GGTCTC 2 cut(s) 1436, 2086
Eco57I CTGAAG 4 cut(s) 21, 831, 1167, 1455
Eco72I CACGTG 2 cut(s) 1598, 1781
Eco88I CYCGRG 1 cut(s) 1719
Eco91I GGTNACC 1 cut(s) 2284
EcoO109I RGGNCCY 1 cut(s) 988
EcoO65I GGTNACC 1 cut(s) 2284
EcoRI GAATTC 2 cut(s) 1225, 1424
EcoT14I CCWWGG 2 cut(s) 1262, 2006
EcoT22I ATGCAT 1 cut(s) 1912
EcoT38I GRGCYC 1 cut(s) 1951
ErhI CCWWGG 2 cut(s) 1262, 2006
FaeI CATG 4 cut(s) 1075, 1565, 1646, 1789
FaqI GGGAC 1 cut(s) 2118
FatI CATG 4 cut(s) 1071, 1561, 1642, 1785
FauI CCCGC 1 cut(s) 2269
Fnu4HI GCNGC 8 cut(s) 464, 620, 1245, 1514, 1611, 1620, 2061, 2064
FokI GGATG 6 cut(s) 175, 256, 1641, 1769, 1897, 1919
FriOI GRGCYC 1 cut(s) 1951
Fsp4HI GCNGC 8 cut(s) 464, 620, 1245, 1514, 1611, 1620, 2061, 2064
FspBI CTAG 4 cut(s) 57, 63, 1283, 1937
GluI GCNGC 8 cut(s) 464, 620, 1245, 1514, 1611, 1620, 2061, 2064
GsaI CCCAGC 1 cut(s) 1032
GsuI CTGGAG 4 cut(s) 204, 645, 1020, 1898
HaeIII GGCC 3 cut(s) 990, 1808, 2135
HapII CCGG 3 cut(s) 792, 1241, 2290
Hin1II CATG 4 cut(s) 1075, 1565, 1646, 1789
HpaII CCGG 3 cut(s) 792, 1241, 2290
Hpy188III TCNNGA 9 cut(s) 662, 1168, 1222, 1257, 1583, 1643, 1754, 1877, 1973
HpyCH4III ACNGT 3 cut(s) 261, 1920, 2252
HpyCH4IV ACGT 4 cut(s) 356, 608, 1597, 1780
HpyF10VI GCNNNNNNNGC 7 cut(s) 59, 1241, 1616, 1619, 1659, 1907, 2273
HpySE526I ACGT 4 cut(s) 356, 608, 1597, 1780
Hsp92II CATG 4 cut(s) 1075, 1565, 1646, 1789
Kzo9I GATC 3 cut(s) 238, 361, 2002
LmnI GCTCC 4 cut(s) 157, 841, 889, 1192
Lsp1109I GCAGC 6 cut(s) 1256, 1500, 1597, 1631, 2047, 2050
LweI GCATC 7 cut(s) 176, 707, 743, 871, 1747, 1897, 1919
MaeI CTAG 4 cut(s) 57, 63, 1283, 1937
MaeII ACGT 4 cut(s) 356, 608, 1597, 1780
MaeIII GTNAC 2 cut(s) 609, 2284
MalI GATC 3 cut(s) 240, 363, 2004
MboI GATC 3 cut(s) 238, 361, 2002
MfeI CAATTG 1 cut(s) 1391
MhlI GDGCHC 1 cut(s) 1951
MlsI TGGCCA 1 cut(s) 2135
MluNI TGGCCA 1 cut(s) 2135
MlyI GAGTC 3 cut(s) 849, 1417, 1942
MmeI TCCRAC 1 cut(s) 185
Mox20I TGGCCA 1 cut(s) 2135
Mph1103I ATGCAT 1 cut(s) 1912
MroXI GAANNNNTTC 1 cut(s) 1204
MscI TGGCCA 1 cut(s) 2135
MseI TTAA 2 cut(s) 1602, 2147
MslI CAYNNNNRTG 1 cut(s) 1560
Msp20I TGGCCA 1 cut(s) 2135
MspA1I CMGCKG 2 cut(s) 41, 2204
MspI CCGG 3 cut(s) 792, 1241, 2290
MspR9I CCNGG 2 cut(s) 792, 2290
MunI CAATTG 1 cut(s) 1391
Mva1269I GAATGC 1 cut(s) 1055
MwoI GCNNNNNNNGC 7 cut(s) 59, 1241, 1616, 1619, 1659, 1907, 2273
NciI CCSGG 2 cut(s) 792, 2290
NdeII GATC 3 cut(s) 238, 361, 2002
NlaIII CATG 4 cut(s) 1075, 1565, 1646, 1789
NlaIV GGNNCC 2 cut(s) 989, 1809
NmeAIII GCCGAG 1 cut(s) 2168
NmuCI GTSAC 1 cut(s) 609
NsiI ATGCAT 1 cut(s) 1912
PagI TCATGA 1 cut(s) 1642
PaqCI CACCTGC 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PctI GAATGC 1 cut(s) 1055
PdmI GAANNNNTTC 1 cut(s) 1204
PfeI GAWTC 8 cut(s) 95, 104, 226, 665, 1154, 1315, 1356, 1629
PflMI CCANNNNNTGG 1 cut(s) 1921
PkrI GCNGC 8 cut(s) 465, 621, 1246, 1515, 1612, 1621, 2062, 2065
PleI GAGTC 3 cut(s) 849, 1416, 1941
PmaCI CACGTG 2 cut(s) 1598, 1781
PmlI CACGTG 2 cut(s) 1598, 1781
PpsI GAGTC 3 cut(s) 849, 1416, 1941
Ppu21I YACGTR 2 cut(s) 1598, 1781
PspCI CACGTG 2 cut(s) 1598, 1781
PspEI GGTNACC 1 cut(s) 2284
PspFI CCCAGC 1 cut(s) 1028
PspN4I GGNNCC 2 cut(s) 989, 1809
PspPI GGNCC 2 cut(s) 988, 1807
PstI CTGCAG 1 cut(s) 1237
PstNI CAGNNNCTG 1 cut(s) 668
PvuII CAGCTG 2 cut(s) 41, 2204
RsaI GTAC 5 cut(s) 204, 957, 1777, 1856, 2254
RsaNI GTAC 5 cut(s) 203, 956, 1776, 1855, 2253
RseI CAYNNNNRTG 1 cut(s) 1560
SaqAI TTAA 2 cut(s) 1602, 2147
SatI GCNGC 8 cut(s) 464, 620, 1245, 1514, 1611, 1620, 2061, 2064
Sau3AI GATC 3 cut(s) 238, 361, 2002
Sau96I GGNCC 2 cut(s) 988, 1807
SchI GAGTC 3 cut(s) 849, 1417, 1942
ScrFI CCNGG 2 cut(s) 792, 2290
SduI GDGCHC 1 cut(s) 1951
SfaNI GCATC 7 cut(s) 176, 707, 743, 871, 1747, 1897, 1919
SfcI CTRYAG 1 cut(s) 1233
SmiMI CAYNNNNRTG 1 cut(s) 1560
SmlI CTYRAG 1 cut(s) 2012
SmoI CTYRAG 1 cut(s) 2012
SspI AATATT 2 cut(s) 925, 2303
SspMI CTAG 4 cut(s) 57, 63, 1283, 1937
StyD4I CCNGG 2 cut(s) 790, 2288
StyI CCWWGG 2 cut(s) 1262, 2006
TaaI ACNGT 3 cut(s) 261, 1920, 2252
TaiI ACGT 4 cut(s) 359, 611, 1600, 1783
TaqI TCGA 2 cut(s) 1951, 2124
TatI WGTACW 3 cut(s) 1775, 1854, 2252
TauI GCSGC 2 cut(s) 466, 622
TfiI GAWTC 8 cut(s) 95, 104, 226, 665, 1154, 1315, 1356, 1629
Tru1I TTAA 2 cut(s) 1602, 2147
Tru9I TTAA 2 cut(s) 1602, 2147
TscAI CASTG 5 cut(s) 228, 264, 402, 1003, 1014
TseFI GTSAC 1 cut(s) 609
TseI GCWGC 6 cut(s) 1244, 1513, 1610, 1619, 2060, 2063
Tsp45I GTSAC 1 cut(s) 609
TspDTI ATGAA 8 cut(s) 258, 1039, 1146, 1296, 1539, 1550, 1631, 1659
TspGWI ACGGA 2 cut(s) 190, 1909
TspRI CASTG 5 cut(s) 228, 264, 402, 1003, 1014
Van91I CCANNNNNTGG 1 cut(s) 1921
XapI RAATTY 5 cut(s) 295, 903, 1103, 1225, 1424
XcmI CCANNNNNNNNNTGG 1 cut(s) 1750
XmnI GAANNNNTTC 1 cut(s) 1204
XspI CTAG 4 cut(s) 57, 63, 1283, 1937
Zsp2I ATGCAT 1 cut(s) 1912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.