Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007570

Physical Location & Seq

Genomic Coordinates Reverse (-)

46834152 .. 46838994

Gene Structure 4843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0293900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTCTGACTCAGGTTCACATACTAGACCGAGTCAGGTTCACAGAGACGAATCAGGGGCAACCCAGACTGTGGATGCTTCAAGAACAGGCACGACACAAATGGATCATAGAGAGCGTGCACGTGCTAGCCATCAAGAATGGCGACAATCGATGAGTTCTACACAACATGAAGCCTATTTGGCACGGCGGCGAGCTCATGCTCGGGGAAAGCGACTAGCCGTGGAAAATGTAAGTGACCATGGACAAGAGGCGGGCCCAAGTAATAGGAATAGGCTAGCTCCAGTACACTCCGACAACGAGAGCATAAGTTCAAGAGTTTCATCCTATTCCCAAAACCATGACCAAGATGCTACAAGGGTGCGCTTGACCCACATAAGACAATTAGCCCGTTCGACTACATCTCGACCGAGCAATGTGGTTATTCAGAATTCTGTGCCTTACGAGATGCCTAATGTCACAATGAATAATCACGATGAGGACCACAATAACAACGAGCATATGATGAATAATCATGAGGATCAGAACAACAACACTGAGCTAGAGAATAACCAACAGGATCAGCGCAGCAGCAGTGTTGACCCAGTGCAGCGTACAAGGAGAGCAGTAGTAAATTACAACTGCGCTAGAGATTTTAATGAGGGATGGGGTGTCCCATTTTGTCGATTGCCTGCACTAAGAACATGTCCATACTGCAATGCACGGTTATTTCATCGAGAGACCTTCAATTTGTGTTGTTCGAAAGGAAATATTGTTCTGCCTCTAATACCCTCTCCGCTAGAGATGATCCAGCTCTTTTCTGACCAAACAGATGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

271

Amino Acids

30.87

Weight (kDa)

6.95

Isoelectric Point (pI)

54.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26150 AT1G26150 AT1G68690 AT1G68690 AT1G68690 AT1G68690
fragaria_vesca	FvH4_4g28470 FvH4_4g28470 FvH4_4g28470
malus_domestica	MD13G1050900.v1.1 MD16G1051300.v1.1
prunus_persica	Prupe.1G301200_v2.0.a1 Prupe.1G301200_v2.0.a1
pyrus_communis	pycom13g04500 pycom16g04510
rosa_chinensis	RchiOBHm_Chr4g0436441
rosa_laevigata	RLG00000006518
rosa_multiflora	Rmu_sc0000579.1_g000005
rosa_rugosa	Rorug04G0293900
rosa_samantha	Rh4AG348400 Rh4BG357100 Rh4CG371600 Rh4DG350800
rosa_wichuraiana	Rw4G030450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	70
AciI	CCGC	3 cut(s)	187, 251, 773
AclWI	GGATC	4 cut(s)	111, 525, 564, 778
AcsI	RAATTY	1 cut(s)	427
AcvI	CACGTG	1 cut(s)	122
AfaI	GTAC	2 cut(s)	285, 592
AfiI	CCNNNNNNNGG	1 cut(s)	70
AflIII	ACRYGT	1 cut(s)	680
AgsI	TTSAA	3 cut(s)	81, 312, 724
AloI	GAACNNNNNNTCC	2 cut(s)	735, 767
AluBI	AGCT	4 cut(s)	194, 278, 538, 790
AluI	AGCT	4 cut(s)	194, 278, 538, 790
Alw21I	GWGCWC	2 cut(s)	121, 196
Alw26I	GTCTC	2 cut(s)	39, 710
Alw44I	GTGCAC	1 cut(s)	117
AlwI	GGATC	4 cut(s)	111, 525, 564, 778
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	1 cut(s)	253
ApaI	GGGCCC	1 cut(s)	257
ApaLI	GTGCAC	1 cut(s)	117
ApeKI	GCWGC	3 cut(s)	564, 567, 586
ApoI	RAATTY	1 cut(s)	427
ArsI	GACNNNNNNTTYG	2 cut(s)	709, 741
AspLEI	GCGC	3 cut(s)	363, 564, 623
AspS9I	GGNCC	3 cut(s)	253, 254, 478
AsuII	TTCGAA	1 cut(s)	737
AsuNHI	GCTAGC	2 cut(s)	125, 274
AvaI	CYCGRG	1 cut(s)	201
AvaII	GGWCC	1 cut(s)	478
BaeGI	GKGCMC	2 cut(s)	121, 257
BanII	GRGCYC	2 cut(s)	196, 257
BbrPI	CACGTG	1 cut(s)	122
Bbv12I	GWGCWC	2 cut(s)	121, 196
BbvI	GCAGC	3 cut(s)	576, 579, 598
BccI	CCATC	3 cut(s)	138, 636, 803
BceAI	ACGGC	2 cut(s)	200, 203
BcoDI	GTCTC	2 cut(s)	39, 710
BfaI	CTAG	7 cut(s)	24, 126, 215, 275, 539, 624, 776
BglI	GCCNNNNNGGC	1 cut(s)	179
BisI	GCNGC	4 cut(s)	188, 565, 568, 587
BlsI	GCNGC	4 cut(s)	189, 566, 569, 588
Bme18I	GGWCC	1 cut(s)	478
BmeT110I	CYCGRG	1 cut(s)	201
BmgT120I	GGNCC	3 cut(s)	253, 254, 478
BmiI	GGNNCC	1 cut(s)	255
BmrI	ACTGGG	1 cut(s)	575
BmsI	GCATC	3 cut(s)	64, 337, 435
BmtI	GCTAGC	2 cut(s)	129, 278
BmuI	ACTGGG	1 cut(s)	575
BpmI	CTGGAG	1 cut(s)	264
Bpu14I	TTCGAA	1 cut(s)	737
Bsa29I	ATCGAT	1 cut(s)	149
BsaAI	YACGTR	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	710
BsaJI	CCNNGG	2 cut(s)	219, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	2 cut(s)	281, 581
Bse3DI	GCAATG	2 cut(s)	418, 700
BseCI	ATCGAT	1 cut(s)	149
BseDI	CCNNGG	2 cut(s)	219, 238
BseGI	GGATG	3 cut(s)	79, 320, 647
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMI	GCAATG	2 cut(s)	418, 700
BseMII	CTCAG	2 cut(s)	24, 525
BseNI	ACTGG	2 cut(s)	281, 581
BseSI	GKGCMC	2 cut(s)	121, 257
BseXI	GCAGC	3 cut(s)	576, 579, 598
BsgI	GTGCAG	2 cut(s)	605, 654
Bsh1285I	CGRYCG	1 cut(s)	407
BshFI	GGCC	1 cut(s)	255
BshVI	ATCGAT	1 cut(s)	149
BsiEI	CGRYCG	1 cut(s)	407
BsiHKAI	GWGCWC	2 cut(s)	121, 196
BsiHKCI	CYCGRG	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	635
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	2 cut(s)	39, 710
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	635
BsnI	GGCC	1 cut(s)	255
Bso31I	GGTCTC	1 cut(s)	710
BsoBI	CYCGRG	1 cut(s)	201
Bsp119I	TTCGAA	1 cut(s)	737
Bsp120I	GGGCCC	1 cut(s)	253
Bsp1286I	GDGCHC	3 cut(s)	121, 196, 257
Bsp143I	GATC	4 cut(s)	103, 517, 556, 783
Bsp19I	CCATGG	1 cut(s)	238
BspACI	CCGC	3 cut(s)	187, 251, 773
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	2 cut(s)	23, 526
BspDI	ATCGAT	1 cut(s)	149
BspHI	TCATGA	1 cut(s)	511
BspLI	GGNNCC	1 cut(s)	255
BspOI	GCTAGC	2 cut(s)	129, 278
BspPI	GGATC	4 cut(s)	111, 525, 564, 778
BspT104I	TTCGAA	1 cut(s)	737
BspTNI	GGTCTC	1 cut(s)	710
BsrDI	GCAATG	2 cut(s)	418, 700
BsrI	ACTGG	2 cut(s)	281, 581
BssECI	CCNNGG	2 cut(s)	219, 238
BssMI	GATC	4 cut(s)	103, 517, 556, 783
BssT1I	CCWWGG	1 cut(s)	238
Bst4CI	ACNGT	2 cut(s)	70, 702
BstBAI	YACGTR	1 cut(s)	122
BstBI	TTCGAA	1 cut(s)	737
BstC8I	GCNNGC	6 cut(s)	117, 127, 192, 253, 276, 669
BstDEI	CTNAG	3 cut(s)	10, 534, 674
BstDSI	CCRYGG	2 cut(s)	219, 238
BstF5I	GGATG	3 cut(s)	79, 320, 647
BstHHI	GCGC	3 cut(s)	363, 564, 623
BstKTI	GATC	4 cut(s)	106, 520, 559, 786
BstMAI	GTCTC	2 cut(s)	39, 710
BstMBI	GATC	4 cut(s)	103, 517, 556, 783
BstMCI	CGRYCG	1 cut(s)	407
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	684
BstSLI	GKGCMC	2 cut(s)	121, 257
BstV1I	GCAGC	3 cut(s)	576, 579, 598
BstXI	CCANNNNNNTGG	1 cut(s)	809
Bsu15I	ATCGAT	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	255
BsuTUI	ATCGAT	1 cut(s)	149
BtgI	CCRYGG	2 cut(s)	219, 238
BtsCI	GGATG	3 cut(s)	79, 320, 647
BtsI	GCAGTG	1 cut(s)	577
BtsIMutI	CAGTG	3 cut(s)	531, 577, 588
Cac8I	GCNNGC	6 cut(s)	117, 127, 192, 253, 276, 669
CciI	TCATGA	1 cut(s)	511
CfoI	GCGC	3 cut(s)	363, 564, 623
Cfr13I	GGNCC	3 cut(s)	253, 254, 478
ClaI	ATCGAT	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	284, 591
CviAII	CATG	6 cut(s)	167, 197, 239, 338, 512, 681
CviQI	GTAC	2 cut(s)	284, 591
DdeI	CTNAG	3 cut(s)	10, 534, 674
DpnI	GATC	4 cut(s)	105, 519, 558, 785
DpnII	GATC	4 cut(s)	103, 517, 556, 783
Ecl136II	GAGCTC	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	238
Eco24I	GRGCYC	2 cut(s)	196, 257
Eco31I	GGTCTC	1 cut(s)	710
Eco47I	GGWCC	1 cut(s)	478
Eco53kI	GAGCTC	1 cut(s)	194
Eco72I	CACGTG	1 cut(s)	122
Eco88I	CYCGRG	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	238
EcoT38I	GRGCYC	2 cut(s)	196, 257
ErhI	CCWWGG	1 cut(s)	238
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	6 cut(s)	170, 200, 242, 341, 515, 684
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	6 cut(s)	166, 196, 238, 337, 511, 680
FauI	CCCGC	1 cut(s)	244
FauNDI	CATATG	1 cut(s)	498
Fnu4HI	GCNGC	4 cut(s)	188, 565, 568, 587
FokI	GGATG	3 cut(s)	86, 307, 654
FriOI	GRGCYC	2 cut(s)	196, 257
Fsp4HI	GCNGC	4 cut(s)	188, 565, 568, 587
FspBI	CTAG	7 cut(s)	24, 126, 215, 275, 539, 624, 776
GlaI	GCGC	3 cut(s)	362, 563, 622
GluI	GCNGC	4 cut(s)	188, 565, 568, 587
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	255
HhaI	GCGC	3 cut(s)	363, 564, 623
Hin1II	CATG	6 cut(s)	170, 200, 242, 341, 515, 684
Hin6I	GCGC	3 cut(s)	361, 562, 621
HinP1I	GCGC	3 cut(s)	361, 562, 621
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HinfI	GANTC	3 cut(s)	8, 31, 50
Hpy166II	GTNNAC	5 cut(s)	17, 40, 119, 286, 577
Hpy188I	TCNGA	5 cut(s)	7, 292, 426, 522, 799
Hpy188III	TCNNGA	7 cut(s)	81, 134, 312, 402, 470, 512, 713
Hpy8I	GTNNAC	5 cut(s)	17, 40, 119, 286, 577
HpyAV	CCTTC	1 cut(s)	730
HpyCH4III	ACNGT	2 cut(s)	70, 702
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	5 cut(s)	119, 586, 671, 693, 698
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	3 cut(s)	10, 534, 674
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	6 cut(s)	170, 200, 242, 341, 515, 684
HspAI	GCGC	3 cut(s)	361, 562, 621
Kzo9I	GATC	4 cut(s)	103, 517, 556, 783
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	9 cut(s)	20, 39, 72, 77, 294, 539, 594, 681, 800
Lsp1109I	GCAGC	3 cut(s)	576, 579, 598
LweI	GCATC	3 cut(s)	64, 337, 435
MaeI	CTAG	7 cut(s)	24, 126, 215, 275, 539, 624, 776
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	2 cut(s)	233, 454
MalI	GATC	4 cut(s)	105, 519, 558, 785
MboI	GATC	4 cut(s)	103, 517, 556, 783
MhlI	GDGCHC	3 cut(s)	121, 196, 257
MluCI	AATT	4 cut(s)	380, 427, 610, 724
MlyI	GAGTC	2 cut(s)	2, 40
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	6 cut(s)	241, 469, 508, 631, 768, 778
MseI	TTAA	1 cut(s)	633
MwoI	GCNNNNNNNGC	1 cut(s)	179
NcoI	CCATGG	1 cut(s)	238
NdeI	CATATG	1 cut(s)	498
NdeII	GATC	4 cut(s)	103, 517, 556, 783
NheI	GCTAGC	2 cut(s)	125, 274
NlaIII	CATG	6 cut(s)	170, 200, 242, 341, 515, 684
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	2 cut(s)	233, 454
NspI	RCATGY	1 cut(s)	684
NspV	TTCGAA	1 cut(s)	737
PagI	TCATGA	1 cut(s)	511
PciI	ACATGT	1 cut(s)	680
PcsI	WCGNNNNNNNCGW	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	50
PflFI	GACNNNGTC	1 cut(s)	30
PflMI	CCANNNNNTGG	1 cut(s)	70
PkrI	GCNGC	4 cut(s)	189, 566, 569, 588
PleI	GAGTC	2 cut(s)	2, 39
PmaCI	CACGTG	1 cut(s)	122
PmlI	CACGTG	1 cut(s)	122
PpsI	GAGTC	2 cut(s)	2, 39
Ppu21I	YACGTR	1 cut(s)	122
PscI	ACATGT	1 cut(s)	680
Psp124BI	GAGCTC	1 cut(s)	196
PspCI	CACGTG	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	255
PspOMI	GGGCCC	1 cut(s)	253
PspPI	GGNCC	3 cut(s)	253, 254, 478
PsyI	GACNNNGTC	1 cut(s)	30
RsaI	GTAC	2 cut(s)	285, 592
RsaNI	GTAC	2 cut(s)	284, 591
SacI	GAGCTC	1 cut(s)	196
SaqAI	TTAA	1 cut(s)	633
SatI	GCNGC	4 cut(s)	188, 565, 568, 587
Sau3AI	GATC	4 cut(s)	103, 517, 556, 783
Sau96I	GGNCC	3 cut(s)	253, 254, 478
SchI	GAGTC	2 cut(s)	2, 40
SduI	GDGCHC	3 cut(s)	121, 196, 257
SetI	ASST	8 cut(s)	16, 39, 124, 196, 280, 540, 722, 792
SfaNI	GCATC	3 cut(s)	64, 337, 435
SfuI	TTCGAA	1 cut(s)	737
SinI	GGWCC	1 cut(s)	478
Sse9I	AATT	4 cut(s)	380, 427, 610, 724
SsiI	CCGC	3 cut(s)	187, 251, 773
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	7 cut(s)	24, 126, 215, 275, 539, 624, 776
SstI	GAGCTC	1 cut(s)	196
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	70, 702
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	6 cut(s)	149, 392, 403, 661, 712, 737
TaqII	GACCGA	2 cut(s)	43, 421
TasI	AATT	4 cut(s)	380, 427, 610, 724
TatI	WGTACW	1 cut(s)	283
TauI	GCSGC	1 cut(s)	190
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TscAI	CASTG	3 cut(s)	538, 577, 588
TseFI	GTSAC	2 cut(s)	233, 454
TseI	GCWGC	3 cut(s)	564, 567, 586
Tsp45I	GTSAC	2 cut(s)	233, 454
TspDTI	ATGAA	5 cut(s)	183, 309, 476, 518, 698
TspRI	CASTG	3 cut(s)	538, 577, 588
Tth111I	GACNNNGTC	1 cut(s)	30
Van91I	CCANNNNNTGG	1 cut(s)	70
VneI	GTGCAC	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	1 cut(s)	427
XceI	RCATGY	1 cut(s)	684
XspI	CTAG	7 cut(s)	24, 126, 215, 275, 539, 624, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.