Rw4G030450

proline-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
57177217 .. 57181172
3956 bp
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UTR
Exon/CDS
Intron
Rw4G030450.1

Sequence Viewer

Length: 2166 bp
ATGGCAACCACATCGCCATCTCCGAACTCATCTCCTTCAGCTGTGCCACCAGCTTCTAGTGCTAGTTCCACACCACCACCACAGCCCAATGTGGAATCACCAGATTCCTCAGACACTACAACTCAATCTCCACCGCCTGATGTTCCATCAGCTCCTCCTCCAACTGCATCATCACCCCCTCCAATTCCATCCTCCCCTTCCGTACCTACACCATCACCTCCAGTTAATCAACAATCTGATCCACCAGCCTCACCGCCACCGCCTTCTTCATCCAATGTGCCTCCACCATCTTCAAATTCTTCACCCCCACCATCATCTGACCCACCAAAGAGTTCACCTTCCCCACCACCACCAACGTCTGATCCACCTGCAAGTTCTCCTCCCCCACCACAGCCAGTGAGTTCACCTCCACCACCAACTTCAAGTCCACCTAAGACTTCACCTCCACCTCCATCATCAACGCCGCCCAAAAGTTCACCTCCACCTCCATCATCAACACCGCCCAAAAGTTCACCATCAGAGCCACCTGAGAAATCTCCTCCACCTCCACCAGCAAATCCCCCTGAAACATCACCACCGCCTCCACCAACATCAAAGCCCCCTGAAACGTCACCACCGCCGCCACCAACATCAAAGCCACCTGAGAAATCACCACCACCTCCAGAATCTGAGCCACCCAAAAGTTCACCTCCACCACCAGCATCCACTCCTCCTAAAAGTTCACCTCCTCCACAGGCATCAGAGCCTCCAAGCAGTTCACCCCCACCTTCAAGCCCCAACCCTCCCCCTCCACCCGGTTCTCAACCAACCCCTGCAACCCCACCTCCGAAGTCATCAGCTCCACCACCCACAATACGACTCTCACCACCTCCACCCTCAGATGATGCTCCACCACCAACTACTCAAATTCCAAGCCCACCATCAAATATTCCAAGTTCAAACAATTCCAATCCTAATGTACCACCAAGTTCAAATGCCACAAGTAATAGGGGCCTTAGCACTGGAGGTGCAGTGGCAATTAGTGTAGTGGCTGGGATAATAGTGCTTAGCTTCATTGCATTCGCTGTATGGTGCATGAGGAGGAAGCAAAAGAAAAAGGTTTCTGGATTTGGAGGTTATGTTATGCCATCGCCGATGGTATCTTCTCCCCAATCAGATTCATCATCATTCTTGAAGGCACATTCTTCAGCTCCCCTTATAGGAAGTGGTTCTGGTAGTGATTTCGTGAATTCTCCTGCAGAACCGGCAGCAGGCAATTCAAGACCTTGGTTTACTTATGACGAACTAGCTAAGGCTACAAATGGCTTTTCATCTCAGAATCTTTTGGGGGAAGGTGGATTTGGCTCTGTATATAAGGGAATCCTGCCAGATGATAGAGAGGTGGCAGTAAAACAATTGAAAATAGGTGGGAGTCAGGGTGAGAGAGAATTCAAAGCTGAAGTTGAGACCATTAGTCGTGTTCACCACCGCCATTTGGTTTCTTTGGTGGGCTATTGCATTTCTGAGAACCAAAGGCTGCTTGTCTATGAATATGTCTCTAATGATACCCTCTATTTCCATCTTCATGGAGAAGGTAGGTCAGTTCTTGACTGGGCAACACGTGTTAAAGTTGCTGCTGGTGCAGCTCGTGGAATCGCCTATCTTCATGAAGACTGCCATCCTCGCATTATTCACAGGGATATAAAGTCATCAAACATTCTATTAGATAACAACTTTGAAGCTCGGGTTTCAGATTTTGGACTTGCCAAATTGTGTCTGGATGCAAATACACATATAAGTACACGTGTCATGGGAACTTTTGGATATGTGGCCCCTGAGTATGCTTCAAGTGGCAAACTGACTGAGAAATCTGATGTGTACTCGTTTGGAGTTGTTCTTCTGGAGTTGATTACTGGACGGAAGGCTGTGGATGCATCCCAACCGTTAGGAGATGAGAGTCTAGTTGAATGGGCTCGACCCTTATTGGGTTATGCTCTTGATAATGAGGAGTTTGAGGGTTTGGTTGATCCAAGGCTTGAGAAGAACTATGTTGAGAGTGAAGTGTTCAGACTGATTGAGGTTGCTGCTGCTTGTGTGCGACACTCATCTGCTAAGAGACCACGAATGGGACAGGTAATAAAAGCTCATACTTCTCTCTTATGTAGCTTATTCATTCCAGTAGGGTGA

Protein Analysis

721

Amino Acids

74.86

Weight (kDa)

6.22

Isoelectric Point (pI)

85.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 437 - 639 3e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 439 - 706 1.6e-44 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 376
Acc36I ACCTGC 1 cut(s) 376
AciI CCGC 9 cut(s) 134, 254, 260, 464, 500, 578, 617, 620, 1468
AclWI GGATC 3 cut(s) 233, 356, 2000
AcsI RAATTY 4 cut(s) 295, 906, 1228, 1427
AcuI CTGAAG 3 cut(s) 21, 1170, 1458
AcvI CACGTG 2 cut(s) 1601, 1784
AfaI GTAC 4 cut(s) 204, 960, 1780, 1859
AfiI CCNNNNNNNGG 6 cut(s) 794, 1199, 1250, 1474, 1964, 2105
AflIII ACRYGT 4 cut(s) 1598, 1600, 1781, 1783
AhdI GACNNNNNGTC 1 cut(s) 1452
AjuI GAANNNNNNNTTGG 2 cut(s) 1323, 1355
Alw26I GTCTC 3 cut(s) 1439, 1540, 2089
AlwI GGATC 3 cut(s) 233, 356, 2000
AlwNI CAGNNNCTG 1 cut(s) 668
Ama87I CYCGRG 1 cut(s) 1722
AoxI GGCC 2 cut(s) 991, 1809
ApeKI GCWGC 6 cut(s) 1247, 1516, 1613, 1622, 2063, 2066
ApoI RAATTY 4 cut(s) 295, 906, 1228, 1427
Asp700I GAANNNNTTC 1 cut(s) 1207
AspS9I GGNCC 2 cut(s) 991, 1810
AsuC2I CCSGG 1 cut(s) 795
AvaI CYCGRG 1 cut(s) 1722
BanII GRGCYC 1 cut(s) 1954
BauI CACGAG 1 cut(s) 1626
BbrPI CACGTG 2 cut(s) 1601, 1784
BbsI GAAGAC 1 cut(s) 1656
BbvI GCAGC 6 cut(s) 1259, 1503, 1600, 1634, 2050, 2053
BcgI CGANNNNNNTGC 1 cut(s) 28
BcnI CCSGG 1 cut(s) 795
BcoDI GTCTC 3 cut(s) 1439, 1540, 2089
BfaI CTAG 4 cut(s) 57, 63, 1286, 1940
BfmI CTRYAG 1 cut(s) 1236
BfuAI ACCTGC 1 cut(s) 376
BisI GCNGC 8 cut(s) 464, 620, 1248, 1517, 1614, 1623, 2064, 2067
BlpI GCTNAGC 1 cut(s) 1046
BlsI GCNGC 8 cut(s) 465, 621, 1249, 1518, 1615, 1624, 2065, 2068
Bme1390I CCNGG 1 cut(s) 795
BmeRI GACNNNNNGTC 1 cut(s) 1452
BmeT110I CYCGRG 1 cut(s) 1722
BmgT120I GGNCC 2 cut(s) 991, 1810
BmiI GGNNCC 2 cut(s) 992, 1812
BmrFI CCNGG 1 cut(s) 795
BmrI ACTGGG 1 cut(s) 1600
BmsI GCATC 7 cut(s) 176, 710, 746, 874, 1750, 1900, 1922
BmuI ACTGGG 1 cut(s) 1600
BpiI GAAGAC 1 cut(s) 1656
BplI GAGNNNNNCTC 2 cut(s) 391, 423
BpmI CTGGAG 4 cut(s) 204, 645, 1023, 1901
Bpu10I CCTNAGC 2 cut(s) 995, 1290
Bpu1102I GCTNAGC 1 cut(s) 1046
BpuEI CTTGAG 1 cut(s) 2036
BpuMI CCSGG 1 cut(s) 795
BsaAI YACGTR 2 cut(s) 1601, 1784
BsaI GGTCTC 2 cut(s) 1439, 2089
BsaJI CCNNGG 2 cut(s) 1265, 2009
Bsc4I CCNNNNNNNGG 6 cut(s) 794, 1199, 1250, 1474, 1964, 2105
Bse118I RCCGGY 1 cut(s) 1243
Bse1I ACTGG 6 cut(s) 221, 395, 1006, 1595, 1897, 2156
Bse3DI GCAATG 1 cut(s) 1053
BseDI CCNNGG 2 cut(s) 1265, 2009
BseGI GGATG 7 cut(s) 188, 269, 701, 1657, 1765, 1913, 1915
BseLI CCNNNNNNNGG 6 cut(s) 794, 1199, 1250, 1474, 1964, 2105
BseMI GCAATG 1 cut(s) 1053
BseMII CTCAG 9 cut(s) 123, 519, 633, 660, 891, 1328, 1494, 1806, 1833
BseNI ACTGG 6 cut(s) 221, 395, 1006, 1595, 1897, 2156
BseRI GAGGAG 8 cut(s) 144, 147, 369, 528, 699, 717, 1093, 2000
BseXI GCAGC 6 cut(s) 1259, 1503, 1600, 1634, 2050, 2053
BseYI CCCAGC 1 cut(s) 1031
BsgI GTGCAG 2 cut(s) 1029, 1641
BshFI GGCC 2 cut(s) 993, 1811
BsiHKCI CYCGRG 1 cut(s) 1722
BsiSI CCGG 2 cut(s) 795, 1244
BslFI GGGAC 1 cut(s) 2121
BslI CCNNNNNNNGG 6 cut(s) 794, 1199, 1250, 1474, 1964, 2105
BsmAI GTCTC 3 cut(s) 1439, 1540, 2089
BsmFI GGGAC 1 cut(s) 2121
BsmI GAATGC 1 cut(s) 1058
BsnI GGCC 2 cut(s) 993, 1811
Bso31I GGTCTC 2 cut(s) 1439, 2089
BsoBI CYCGRG 1 cut(s) 1722
Bsp1286I GDGCHC 1 cut(s) 1954
Bsp143I GATC 3 cut(s) 238, 361, 2005
Bsp1720I GCTNAGC 1 cut(s) 1046
BspACI CCGC 9 cut(s) 134, 254, 260, 464, 500, 578, 617, 620, 1468
BspANI GGCC 2 cut(s) 993, 1811
BspCNI CTCAG 9 cut(s) 122, 520, 634, 661, 890, 1327, 1495, 1807, 1834
BspHI TCATGA 1 cut(s) 1645
BspLI GGNNCC 2 cut(s) 992, 1812
BspMAI CTGCAG 1 cut(s) 1240
BspMI ACCTGC 1 cut(s) 376
BspPI GGATC 3 cut(s) 233, 356, 2000
BspTNI GGTCTC 2 cut(s) 1439, 2089
BsrDI GCAATG 1 cut(s) 1053
BsrFI RCCGGY 1 cut(s) 1243
BsrI ACTGG 6 cut(s) 221, 395, 1006, 1595, 1897, 2156
BssAI RCCGGY 1 cut(s) 1243
BssECI CCNNGG 2 cut(s) 1265, 2009
BssMI GATC 3 cut(s) 238, 361, 2005
BssSI CACGAG 1 cut(s) 1626
BssT1I CCWWGG 2 cut(s) 1265, 2009
Bst2BI CACGAG 1 cut(s) 1626
Bst4CI ACNGT 1 cut(s) 1923
BstBAI YACGTR 2 cut(s) 1601, 1784
BstC8I GCNNGC 1 cut(s) 1252
BstF5I GGATG 7 cut(s) 188, 269, 701, 1657, 1765, 1913, 1915
BstKTI GATC 3 cut(s) 241, 364, 2008
BstMAI GTCTC 3 cut(s) 1439, 1540, 2089
BstMBI GATC 3 cut(s) 238, 361, 2005
BstMWI GCNNNNNNNGC 6 cut(s) 59, 1244, 1619, 1622, 1662, 1910
BstSCI CCNGG 1 cut(s) 793
BstSFI CTRYAG 1 cut(s) 1236
BstV1I GCAGC 6 cut(s) 1259, 1503, 1600, 1634, 2050, 2053
BstV2I GAAGAC 1 cut(s) 1656
BstXI CCANNNNNNTGG 1 cut(s) 1565
BsuRI GGCC 2 cut(s) 993, 1811
BtgZI GCGATG 1 cut(s) 1113
BtsCI GGATG 7 cut(s) 188, 269, 701, 1657, 1765, 1913, 1915
BtsI GCAGTG 1 cut(s) 1017
BtsIMutI CAGTG 3 cut(s) 402, 999, 1017
BveI ACCTGC 1 cut(s) 376
Cac8I GCNNGC 1 cut(s) 1252
CaiI CAGNNNCTG 1 cut(s) 668
CciI TCATGA 1 cut(s) 1645
Cfr10I RCCGGY 1 cut(s) 1243
Cfr13I GGNCC 2 cut(s) 991, 1810
Csp6I GTAC 4 cut(s) 203, 959, 1779, 1858
CviAII CATG 4 cut(s) 1075, 1565, 1646, 1789
CviQI GTAC 4 cut(s) 203, 959, 1779, 1858
DpnI GATC 3 cut(s) 240, 363, 2007
DpnII GATC 3 cut(s) 238, 361, 2005
DriI GACNNNNNGTC 1 cut(s) 1452
Eam1105I GACNNNNNGTC 1 cut(s) 1452
Eco130I CCWWGG 2 cut(s) 1265, 2009
Eco24I GRGCYC 1 cut(s) 1954
Eco31I GGTCTC 2 cut(s) 1439, 2089
Eco57I CTGAAG 3 cut(s) 21, 1170, 1458
Eco72I CACGTG 2 cut(s) 1601, 1784
Eco88I CYCGRG 1 cut(s) 1722
EcoO109I RGGNCCY 1 cut(s) 991
EcoRI GAATTC 2 cut(s) 1228, 1427
EcoT14I CCWWGG 2 cut(s) 1265, 2009
EcoT22I ATGCAT 1 cut(s) 1915
EcoT38I GRGCYC 1 cut(s) 1954
ErhI CCWWGG 2 cut(s) 1265, 2009
FaeI CATG 4 cut(s) 1078, 1568, 1649, 1792
FaqI GGGAC 1 cut(s) 2121
FatI CATG 4 cut(s) 1074, 1564, 1645, 1788
Fnu4HI GCNGC 8 cut(s) 464, 620, 1248, 1517, 1614, 1623, 2064, 2067
FokI GGATG 7 cut(s) 175, 256, 688, 1644, 1772, 1900, 1922
FriOI GRGCYC 1 cut(s) 1954
Fsp4HI GCNGC 8 cut(s) 464, 620, 1248, 1517, 1614, 1623, 2064, 2067
FspBI CTAG 4 cut(s) 57, 63, 1286, 1940
GluI GCNGC 8 cut(s) 464, 620, 1248, 1517, 1614, 1623, 2064, 2067
GsaI CCCAGC 1 cut(s) 1035
GsuI CTGGAG 4 cut(s) 204, 645, 1023, 1901
HaeIII GGCC 2 cut(s) 993, 1811
HapII CCGG 2 cut(s) 795, 1244
Hin1II CATG 4 cut(s) 1078, 1568, 1649, 1792
HpaII CCGG 2 cut(s) 795, 1244
HpyAV CCTTC 9 cut(s) 45, 207, 273, 348, 777, 1168, 1325, 1565, 1894
HpyCH4III ACNGT 1 cut(s) 1923
HpyCH4IV ACGT 4 cut(s) 356, 608, 1600, 1783
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 1244, 1619, 1622, 1662, 1910
HpySE526I ACGT 4 cut(s) 356, 608, 1600, 1783
Hsp92II CATG 4 cut(s) 1078, 1568, 1649, 1792
Kzo9I GATC 3 cut(s) 238, 361, 2005
LmnI GCTCC 4 cut(s) 157, 844, 892, 1195
Lsp1109I GCAGC 6 cut(s) 1259, 1503, 1600, 1634, 2050, 2053
LweI GCATC 7 cut(s) 176, 710, 746, 874, 1750, 1900, 1922
MaeI CTAG 4 cut(s) 57, 63, 1286, 1940
MaeII ACGT 4 cut(s) 356, 608, 1600, 1783
MaeIII GTNAC 1 cut(s) 609
MalI GATC 3 cut(s) 240, 363, 2007
MboI GATC 3 cut(s) 238, 361, 2005
MfeI CAATTG 1 cut(s) 1394
MhlI GDGCHC 1 cut(s) 1954
MlyI GAGTC 3 cut(s) 852, 1420, 1945
MmeI TCCRAC 1 cut(s) 185
Mph1103I ATGCAT 1 cut(s) 1915
MroXI GAANNNNTTC 1 cut(s) 1207
MseI TTAA 2 cut(s) 225, 1605
MslI CAYNNNNRTG 1 cut(s) 1563
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 2 cut(s) 795, 1244
MspR9I CCNGG 1 cut(s) 795
MunI CAATTG 1 cut(s) 1394
Mva1269I GAATGC 1 cut(s) 1058
MwoI GCNNNNNNNGC 6 cut(s) 59, 1244, 1619, 1622, 1662, 1910
NciI CCSGG 1 cut(s) 795
NdeII GATC 3 cut(s) 238, 361, 2005
NlaIII CATG 4 cut(s) 1078, 1568, 1649, 1792
NlaIV GGNNCC 2 cut(s) 992, 1812
NmuCI GTSAC 1 cut(s) 609
NsiI ATGCAT 1 cut(s) 1915
PagI TCATGA 1 cut(s) 1645
PaqCI CACCTGC 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PctI GAATGC 1 cut(s) 1058
PdmI GAANNNNTTC 1 cut(s) 1207
PfeI GAWTC 7 cut(s) 95, 104, 665, 1157, 1318, 1359, 1632
PkrI GCNGC 8 cut(s) 465, 621, 1249, 1518, 1615, 1624, 2065, 2068
PleI GAGTC 3 cut(s) 852, 1419, 1944
PmaCI CACGTG 2 cut(s) 1601, 1784
PmlI CACGTG 2 cut(s) 1601, 1784
PpsI GAGTC 3 cut(s) 852, 1419, 1944
Ppu21I YACGTR 2 cut(s) 1601, 1784
PspCI CACGTG 2 cut(s) 1601, 1784
PspFI CCCAGC 1 cut(s) 1031
PspN4I GGNNCC 2 cut(s) 992, 1812
PspPI GGNCC 2 cut(s) 991, 1810
PstI CTGCAG 1 cut(s) 1240
PstNI CAGNNNCTG 1 cut(s) 668
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 4 cut(s) 204, 960, 1780, 1859
RsaNI GTAC 4 cut(s) 203, 959, 1779, 1858
RseI CAYNNNNRTG 1 cut(s) 1563
SaqAI TTAA 2 cut(s) 225, 1605
SatI GCNGC 8 cut(s) 464, 620, 1248, 1517, 1614, 1623, 2064, 2067
Sau3AI GATC 3 cut(s) 238, 361, 2005
Sau96I GGNCC 2 cut(s) 991, 1810
SchI GAGTC 3 cut(s) 852, 1420, 1945
ScrFI CCNGG 1 cut(s) 795
SduI GDGCHC 1 cut(s) 1954
SfaNI GCATC 7 cut(s) 176, 710, 746, 874, 1750, 1900, 1922
SfcI CTRYAG 1 cut(s) 1236
SmiMI CAYNNNNRTG 1 cut(s) 1563
SmlI CTYRAG 1 cut(s) 2015
SmoI CTYRAG 1 cut(s) 2015
SsiI CCGC 9 cut(s) 134, 254, 260, 464, 500, 578, 617, 620, 1468
SspI AATATT 1 cut(s) 928
SspMI CTAG 4 cut(s) 57, 63, 1286, 1940
StyD4I CCNGG 1 cut(s) 793
StyI CCWWGG 2 cut(s) 1265, 2009
TaaI ACNGT 1 cut(s) 1923
TaiI ACGT 4 cut(s) 359, 611, 1603, 1786
TaqI TCGA 1 cut(s) 1954
TatI WGTACW 2 cut(s) 1778, 1857
TauI GCSGC 2 cut(s) 466, 622
TfiI GAWTC 7 cut(s) 95, 104, 665, 1157, 1318, 1359, 1632
Tru1I TTAA 2 cut(s) 225, 1605
Tru9I TTAA 2 cut(s) 225, 1605
TscAI CASTG 3 cut(s) 402, 1006, 1017
TseFI GTSAC 1 cut(s) 609
TseI GCWGC 6 cut(s) 1247, 1516, 1613, 1622, 2063, 2066
Tsp45I GTSAC 1 cut(s) 609
TspDTI ATGAA 9 cut(s) 258, 1042, 1149, 1299, 1542, 1553, 1634, 1662, 2140
TspGWI ACGGA 2 cut(s) 190, 1912
TspRI CASTG 3 cut(s) 402, 1006, 1017
XapI RAATTY 4 cut(s) 295, 906, 1228, 1427
XcmI CCANNNNNNNNNTGG 1 cut(s) 1753
XmnI GAANNNNTTC 1 cut(s) 1207
XspI CTAG 4 cut(s) 57, 63, 1286, 1940
Zsp2I ATGCAT 1 cut(s) 1915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.