RchiOBHm_Chr4g0440251

RING-type zinc-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0018428
Physical Location & Seq
Forward (+)
62466379 .. 62466921
543 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40827

Sequence Viewer

Length: 543 bp
ATGTCCGGCGTGCTGCCCATCTTTGGAATCACAAAAGGTACTTTGTACAATAAAATAGTGGATGCGATAGTCATTTGGGTTTCAAACAGGGGCAGTTCTCAAGAGTCATTGGCCTTATCGGTACATATTATTAGGCAACATACCAAGATTCACTGCAATCGGTGCTTTCGGAGGGATTTGATATTGGAGGTGGAATTGAGGGAGATGGCTTTAATGGAGAGAGCTCTGAGGGAATCGGAAGCCGAGAGAATGAAGAAAATGATGGTACCAGCGAGTGAGTCCGCGATCAAGAACCTTTTGAAGAGGGTAATGGTCGAGGAGGAGGAAAAGGAAAGTACAAGAAAAAGAAGAAAATCTAGTAGTAGTAGTAGTAGTAGTAGTGAGGTGGGTGGTGGTGGGTGTTGTACTGTTTGTTTGGAGCCTCTGGGATCATATGCGACTGAGATGCCTTGCAAACATGCGTTTCATGAAGATTGCATAGTGGGATGGCTGAGACTTAGTCACTATTGTCCACTCTGCAGATCCGAGGTGCCAACTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

180

Amino Acids

20.26

Weight (kDa)

8.59

Isoelectric Point (pI)

74.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 134 - 174 1.2e-10 Ring finger domain
zf-rbx1 PF12678 134 - 174 2.5e-08 RING-H2 zinc finger domain
zf-C3HC4 PF00097 135 - 173 3.9e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 135 - 173 1.5e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 135 - 160 4.2e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31701
rosa_chinensis RchiOBHm_Chr4g0440251
rosa_laevigata RLG00000006194
rosa_multiflora Rmu_sc0001685.1_g000033
rosa_roxburghii Rroxscaffold_1G00006460 Rroxscaffold_5G00381170
rosa_samantha Rh4AG376300 Rh4CG403900 Rh4DG383000
rosa_wichuraiana Rw4G032210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 265
AccB1I GGYRCC 2 cut(s) 265, 529
AccII CGCG 1 cut(s) 284
AciI CCGC 1 cut(s) 282
AclWI GGATC 2 cut(s) 436, 516
AfaI GTAC 6 cut(s) 40, 47, 123, 267, 337, 406
AfiI CCNNNNNNNGG 1 cut(s) 23
AgsI TTSAA 2 cut(s) 84, 301
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Alw21I GWGCWC 1 cut(s) 226
Alw26I GTCTC 1 cut(s) 487
AlwI GGATC 2 cut(s) 436, 516
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 13
Asp718I GGTACC 1 cut(s) 265
BanI GGYRCC 2 cut(s) 265, 529
BanII GRGCYC 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 226
BccI CCATC 4 cut(s) 26, 199, 256, 480
BcgI CGANNNNNNTGC 2 cut(s) 427, 461
BcoDI GTCTC 1 cut(s) 487
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 517
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
BmiI GGNNCC 3 cut(s) 267, 420, 531
BmsI GCATC 2 cut(s) 52, 435
BpuEI CTTGAG 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 525
Bsc4I CCNNNNNNNGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 525
BseGI GGATG 2 cut(s) 67, 491
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMII CTCAG 3 cut(s) 218, 432, 482
BseRI GAGGAG 2 cut(s) 332, 335
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 1 cut(s) 113
BshNI GGYRCC 2 cut(s) 265, 529
BsiHKAI GWGCWC 1 cut(s) 226
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 487
BsnI GGCC 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 226
Bsp1407I TGTACA 1 cut(s) 45
Bsp143I GATC 3 cut(s) 285, 428, 521
BspACI CCGC 1 cut(s) 282
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 3 cut(s) 219, 433, 483
BspFNI CGCG 1 cut(s) 284
BspHI TCATGA 1 cut(s) 466
BspLI GGNNCC 3 cut(s) 267, 420, 531
BspMAI CTGCAG 1 cut(s) 521
BspPI GGATC 2 cut(s) 436, 516
BspT107I GGYRCC 2 cut(s) 265, 529
BsrGI TGTACA 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 525
BssMI GATC 3 cut(s) 285, 428, 521
Bst4CI ACNGT 1 cut(s) 409
Bst6I CTCTTC 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 162
BstAUI TGTACA 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 4 cut(s) 227, 441, 491, 497
BstF5I GGATG 2 cut(s) 67, 491
BstFNI CGCG 1 cut(s) 284
BstKTI GATC 3 cut(s) 288, 431, 524
BstMAI GTCTC 1 cut(s) 487
BstMBI GATC 3 cut(s) 285, 428, 521
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 461
BstSFI CTRYAG 1 cut(s) 517
BstUI CGCG 1 cut(s) 284
BstX2I RGATCY 1 cut(s) 521
BstYI RGATCY 1 cut(s) 521
BsuRI GGCC 1 cut(s) 113
BtsCI GGATG 2 cut(s) 67, 491
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 11
CciI TCATGA 1 cut(s) 466
Csp6I GTAC 6 cut(s) 39, 46, 122, 266, 336, 405
CviAII CATG 2 cut(s) 458, 467
CviJI RGCY 6 cut(s) 113, 209, 224, 242, 421, 490
CviKI_1 RGCY 6 cut(s) 113, 209, 224, 242, 421, 490
CviQI GTAC 6 cut(s) 39, 46, 122, 266, 336, 405
DdeI CTNAG 4 cut(s) 227, 441, 491, 497
DpnI GATC 3 cut(s) 287, 430, 523
DpnII GATC 3 cut(s) 285, 428, 521
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Ecl136II GAGCTC 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 224
EcoICRI GAGCTC 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 226
FaeI CATG 2 cut(s) 461, 470
FaiI YATR 7 cut(s) 126, 141, 433, 435, 459, 468, 479
FatI CATG 2 cut(s) 457, 466
FauNDI CATATG 1 cut(s) 433
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 2 cut(s) 74, 498
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 1 cut(s) 14
FspBI CTAG 1 cut(s) 357
GluI GCNGC 1 cut(s) 14
HaeIII GGCC 1 cut(s) 113
HapII CCGG 1 cut(s) 6
Hin1II CATG 2 cut(s) 461, 470
HinfI GANTC 5 cut(s) 27, 104, 148, 233, 278
HpaII CCGG 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 512
Hpy188I TCNGA 4 cut(s) 171, 228, 238, 526
Hpy188III TCNNGA 3 cut(s) 101, 289, 467
Hpy8I GTNNAC 1 cut(s) 512
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4V TGCA 4 cut(s) 156, 453, 477, 519
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 4 cut(s) 227, 441, 491, 497
Hsp92II CATG 2 cut(s) 461, 470
KpnI GGTACC 1 cut(s) 269
Kzo9I GATC 3 cut(s) 285, 428, 521
LmnI GCTCC 1 cut(s) 418
LpnPI CCDG 4 cut(s) 19, 73, 282, 410
LweI GCATC 2 cut(s) 52, 435
MaeI CTAG 1 cut(s) 357
MaeIII GTNAC 1 cut(s) 500
MalI GATC 3 cut(s) 287, 430, 523
MboI GATC 3 cut(s) 285, 428, 521
MboII GAAGA 4 cut(s) 265, 313, 360, 482
MflI RGATCY 1 cut(s) 521
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 2 cut(s) 194, 538
MlyI GAGTC 2 cut(s) 113, 287
MseI TTAA 1 cut(s) 212
MspI CCGG 1 cut(s) 6
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 162
NdeI CATATG 1 cut(s) 433
NdeII GATC 3 cut(s) 285, 428, 521
NlaIII CATG 2 cut(s) 461, 470
NlaIV GGNNCC 3 cut(s) 267, 420, 531
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 500
NspI RCATGY 1 cut(s) 461
PagI TCATGA 1 cut(s) 466
PfeI GAWTC 3 cut(s) 27, 148, 233
PflFI GACNNNGTC 1 cut(s) 498
PkrI GCNGC 1 cut(s) 15
PleI GAGTC 2 cut(s) 112, 286
PpsI GAGTC 2 cut(s) 112, 286
Psp124BI GAGCTC 1 cut(s) 226
PspN4I GGNNCC 3 cut(s) 267, 420, 531
PstI CTGCAG 1 cut(s) 521
PsuI RGATCY 1 cut(s) 521
PsyI GACNNNGTC 1 cut(s) 498
RsaI GTAC 6 cut(s) 40, 47, 123, 267, 337, 406
RsaNI GTAC 6 cut(s) 39, 46, 122, 266, 336, 405
SacI GAGCTC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 3 cut(s) 285, 428, 521
SchI GAGTC 2 cut(s) 113, 287
SduI GDGCHC 1 cut(s) 226
SetI ASST 6 cut(s) 40, 192, 226, 297, 387, 531
SfaNI GCATC 2 cut(s) 52, 435
SfcI CTRYAG 1 cut(s) 517
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
Sse9I AATT 2 cut(s) 194, 538
SsiI CCGC 1 cut(s) 282
SspMI CTAG 1 cut(s) 357
SstI GAGCTC 1 cut(s) 226
TaaI ACNGT 1 cut(s) 409
TaqI TCGA 1 cut(s) 315
TasI AATT 2 cut(s) 194, 538
TatI WGTACW 3 cut(s) 45, 335, 404
TfiI GAWTC 3 cut(s) 27, 148, 233
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 1 cut(s) 158
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 3 cut(s) 266, 455, 483
TspRI CASTG 1 cut(s) 158
Tth111I GACNNNGTC 1 cut(s) 498
XceI RCATGY 1 cut(s) 461
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.