RLG00000006194

finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018428
Physical Location & Seq
Reverse (-)
5092648 .. 5094773
2126 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006194

Sequence Viewer

Length: 786 bp
ATGGAGATAGTGAATCACGAGGAAAATCACTTCGATTGTCACATCAATCCCACTAGAATACCAGCACTAGACAAGCTTCATCGTCAAGGGGAACTTTGGATAGAGTTTGTCTACAAAGTCTTCCACAGCTATGAGAATAATTCACTAGACAATCAAAGAACTCGTATCAGGCAATACCAAGATCCTGGGGAGTCGAAGAAAGAACTGCACCGATATGAGATGAGCATGCTAAAGAGCCAGAGCCAAACGTCCGGGATTATGTCCGGCGTGCTGCCCATCTTTGGAATCACAAAAGGTACTTCATTGTACAATAAAATAGTGGATGCGATAGTCATTTGGGTTTCAAACAGGGGCAGTTCTCAAGAGTCATTGGCCTTATCCGTACATATTATTAGGCAACACACCAAGATTCACTGCGAGATTCACTGCAATCGGTGCTTTCGGACGGATTTCATATTGGAGGAGGAATTGAGGGAGATGGCTTTGATGGAGAGAGCTCTGAGGGAATCGGAAGCAGAGAGAATGAAGAAAATGATGGTACCAGCGAGTGAGTCAGCGATCAAGAACCTTTTGAAGAGGGTAAGGGTCGAGGAGGAGGAAAAGGAAAGTACAAGAAAAAGAAGAAAATCTAGTAGTAGTAGTAGTGAGGTGGGTGGTGGGGTTCCCCCAAACACTTCAGTAGGGAAAGATCAGAGGATTATCGAGTACTATATATTACTCCCCAATGAAGTGTCGGAGGGAACTCTAGGGGACATCTGGTTTGGGATGCATGATGTACTTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

262

Amino Acids

30.19

Weight (kDa)

6.61

Isoelectric Point (pI)

58.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31701
rosa_chinensis RchiOBHm_Chr4g0440251
rosa_laevigata RLG00000006194
rosa_multiflora Rmu_sc0001685.1_g000033
rosa_roxburghii Rroxscaffold_1G00006460 Rroxscaffold_5G00381170
rosa_samantha Rh4AG376300 Rh4CG403900 Rh4DG383000
rosa_wichuraiana Rw4G032210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 538
AccB1I GGYRCC 1 cut(s) 538
AccI GTMKAC 1 cut(s) 111
AclWI GGATC 1 cut(s) 176
AcuI CTGAAG 1 cut(s) 660
AfaI GTAC 7 cut(s) 298, 308, 384, 540, 610, 707, 777
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 345, 574
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 4 cut(s) 76, 129, 497, 783
AluI AGCT 4 cut(s) 76, 129, 497, 783
Alw21I GWGCWC 1 cut(s) 499
AlwI GGATC 1 cut(s) 176
AoxI GGCC 1 cut(s) 372
ApeKI GCWGC 1 cut(s) 271
ArsI GACNNNNNNTTYG 2 cut(s) 743, 775
Asp718I GGTACC 1 cut(s) 538
AsuC2I CCSGG 1 cut(s) 253
BanI GGYRCC 1 cut(s) 538
BanII GRGCYC 1 cut(s) 499
BauI CACGAG 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 499
BbvI GCAGC 1 cut(s) 258
BccI CCATC 4 cut(s) 284, 472, 481, 529
BciT130I CCWGG 1 cut(s) 186
BcnI CCSGG 1 cut(s) 253
BfaI CTAG 6 cut(s) 54, 68, 146, 630, 746, 784
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
BmcAI AGTACT 1 cut(s) 707
Bme1390I CCNGG 2 cut(s) 186, 253
BmiI GGNNCC 2 cut(s) 540, 663
BmrFI CCNGG 2 cut(s) 186, 253
BmsI GCATC 2 cut(s) 313, 756
BpiI GAAGAC 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 281
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 2 cut(s) 328, 771
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMII CTCAG 1 cut(s) 491
BseRI GAGGAG 3 cut(s) 476, 605, 608
BseXI GCAGC 1 cut(s) 258
BsgI GTGCAG 1 cut(s) 191
BshFI GGCC 1 cut(s) 374
BshNI GGYRCC 1 cut(s) 538
BsiHKAI GWGCWC 1 cut(s) 499
BsiSI CCGG 2 cut(s) 252, 264
BslFI GGGAC 1 cut(s) 764
BslI CCNNNNNNNGG 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 764
BsnI GGCC 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 499
Bsp1407I TGTACA 1 cut(s) 306
Bsp143I GATC 3 cut(s) 181, 558, 688
BspANI GGCC 1 cut(s) 374
BspCNI CTCAG 1 cut(s) 492
BspLI GGNNCC 2 cut(s) 540, 663
BspPI GGATC 1 cut(s) 176
BspT107I GGYRCC 1 cut(s) 538
BsrGI TGTACA 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 3 cut(s) 181, 558, 688
BssSI CACGAG 1 cut(s) 17
Bst2BI CACGAG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 569
BstAPI GCANNNNNTGC 1 cut(s) 435
BstAUI TGTACA 1 cut(s) 306
BstC8I GCNNGC 2 cut(s) 227, 269
BstDEI CTNAG 2 cut(s) 500, 779
BstF5I GGATG 2 cut(s) 328, 771
BstKTI GATC 3 cut(s) 184, 561, 691
BstMBI GATC 3 cut(s) 181, 558, 688
BstMWI GCNNNNNNNGC 1 cut(s) 435
BstNI CCWGG 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 2 cut(s) 184, 251
BstV1I GCAGC 1 cut(s) 258
BstV2I GAAGAC 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 181
BstXI CCANNNNNNTGG 1 cut(s) 185
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 1 cut(s) 374
BtsCI GGATG 2 cut(s) 328, 771
BtsI GCAGTG 2 cut(s) 412, 424
BtsIMutI CAGTG 2 cut(s) 412, 424
Cac8I GCNNGC 2 cut(s) 227, 269
Csp6I GTAC 7 cut(s) 297, 307, 383, 539, 609, 706, 776
CviAII CATG 2 cut(s) 226, 770
CviJI RGCY 8 cut(s) 76, 129, 237, 243, 374, 482, 497, 783
CviKI_1 RGCY 8 cut(s) 76, 129, 237, 243, 374, 482, 497, 783
CviQI GTAC 7 cut(s) 297, 307, 383, 539, 609, 706, 776
DdeI CTNAG 2 cut(s) 500, 779
DpnI GATC 3 cut(s) 183, 560, 690
DpnII GATC 3 cut(s) 181, 558, 688
Eam1104I CTCTTC 1 cut(s) 569
EarI CTCTTC 1 cut(s) 569
Ecl136II GAGCTC 1 cut(s) 497
Eco24I GRGCYC 1 cut(s) 499
Eco53kI GAGCTC 1 cut(s) 497
Eco57I CTGAAG 1 cut(s) 660
EcoICRI GAGCTC 1 cut(s) 497
EcoRII CCWGG 1 cut(s) 184
EcoT22I ATGCAT 1 cut(s) 771
EcoT38I GRGCYC 1 cut(s) 499
FaeI CATG 2 cut(s) 229, 773
FaiI YATR 9 cut(s) 132, 216, 227, 260, 387, 455, 711, 713, 771
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FaqI GGGAC 1 cut(s) 764
FatI CATG 2 cut(s) 225, 769
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 272
FokI GGATG 2 cut(s) 335, 778
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 1 cut(s) 272
FspBI CTAG 6 cut(s) 54, 68, 146, 630, 746, 784
GluI GCNGC 1 cut(s) 272
HaeIII GGCC 1 cut(s) 374
HapII CCGG 2 cut(s) 252, 264
Hin1II CATG 2 cut(s) 229, 773
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 8 cut(s) 13, 191, 285, 365, 409, 421, 506, 551
HpaII CCGG 2 cut(s) 252, 264
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 5 cut(s) 444, 501, 511, 693, 736
Hpy188III TCNNGA 3 cut(s) 17, 362, 562
Hpy8I GTNNAC 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 3 cut(s) 208, 429, 769
HpyF10VI GCNNNNNNNGC 1 cut(s) 435
HpyF3I CTNAG 2 cut(s) 500, 779
HpySE526I ACGT 1 cut(s) 248
Hsp92II CATG 2 cut(s) 229, 773
KpnI GGTACC 1 cut(s) 542
Kzo9I GATC 3 cut(s) 181, 558, 688
Lsp1109I GCAGC 1 cut(s) 258
LweI GCATC 2 cut(s) 313, 756
MaeI CTAG 6 cut(s) 54, 68, 146, 630, 746, 784
MaeII ACGT 1 cut(s) 248
MaeIII GTNAC 1 cut(s) 38
MalI GATC 3 cut(s) 183, 560, 690
MboI GATC 3 cut(s) 181, 558, 688
MboII GAAGA 5 cut(s) 112, 208, 538, 586, 633
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 499
MluCI AATT 2 cut(s) 139, 467
MlyI GAGTC 3 cut(s) 200, 374, 560
MmeI TCCRAC 1 cut(s) 714
Mph1103I ATGCAT 1 cut(s) 771
MslI CAYNNNNRTG 2 cut(s) 129, 213
MspI CCGG 2 cut(s) 252, 264
MspR9I CCNGG 2 cut(s) 186, 253
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 435
NciI CCSGG 1 cut(s) 253
NdeII GATC 3 cut(s) 181, 558, 688
NlaIII CATG 2 cut(s) 229, 773
NlaIV GGNNCC 2 cut(s) 540, 663
NmuCI GTSAC 1 cut(s) 38
NsiI ATGCAT 1 cut(s) 771
NspI RCATGY 1 cut(s) 229
PaeI GCATGC 1 cut(s) 229
PfeI GAWTC 5 cut(s) 13, 285, 409, 421, 506
PfoI TCCNGGA 1 cut(s) 251
PkrI GCNGC 1 cut(s) 273
PleI GAGTC 3 cut(s) 199, 373, 559
PpsI GAGTC 3 cut(s) 199, 373, 559
Psp124BI GAGCTC 1 cut(s) 499
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 2 cut(s) 540, 663
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 7 cut(s) 298, 308, 384, 540, 610, 707, 777
RsaNI GTAC 7 cut(s) 297, 307, 383, 539, 609, 706, 776
RseI CAYNNNNRTG 2 cut(s) 129, 213
SacI GAGCTC 1 cut(s) 499
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 3 cut(s) 181, 558, 688
ScaI AGTACT 1 cut(s) 707
SchI GAGTC 3 cut(s) 200, 374, 560
ScrFI CCNGG 2 cut(s) 186, 253
SduI GDGCHC 1 cut(s) 499
SetI ASST 8 cut(s) 78, 131, 251, 298, 499, 570, 651, 785
SfaNI GCATC 2 cut(s) 313, 756
SmiMI CAYNNNNRTG 2 cut(s) 129, 213
SmlI CTYRAG 1 cut(s) 360
SmoI CTYRAG 1 cut(s) 360
SphI GCATGC 1 cut(s) 229
Sse9I AATT 2 cut(s) 139, 467
SspMI CTAG 6 cut(s) 54, 68, 146, 630, 746, 784
SstI GAGCTC 1 cut(s) 499
StyD4I CCNGG 2 cut(s) 184, 251
TaiI ACGT 1 cut(s) 251
TaqI TCGA 4 cut(s) 33, 194, 588, 702
TasI AATT 2 cut(s) 139, 467
TatI WGTACW 4 cut(s) 306, 608, 705, 775
TfiI GAWTC 5 cut(s) 13, 285, 409, 421, 506
TscAI CASTG 2 cut(s) 419, 431
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 5 cut(s) 68, 291, 442, 539, 741
TspGWI ACGGA 2 cut(s) 370, 461
TspRI CASTG 2 cut(s) 419, 431
XceI RCATGY 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 111
XspI CTAG 6 cut(s) 54, 68, 146, 630, 746, 784
ZrmI AGTACT 1 cut(s) 707
Zsp2I ATGCAT 1 cut(s) 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.