Rh4CG403900

finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0018428
Physical Location & Seq
Forward (+)
65162949 .. 65165617
2669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG403900.1

Sequence Viewer

Length: 798 bp
ATGGAGATAGTGAATCACGAGGAAAATCACTTCGATTGTCACATCAATCCCACTAGAATAACAGCACTAGACCAGCTAATTCATCGTCAAGGGGAACTTTGGATAGAGTTTGTCTACAAAGTCTTCCACAGCTATGAGAATAATTCACTAGACAATCAAAGAACTCGTATCAGGCAATACCAAGATCCTGGGGAGTCGAAGAAAGAACTGCGCCGATATGAGATGAGCATGCTAAAGAGCCAGAGCCAAACGTCCGGGATTATGTCCGGCGTGCTGCCCATCTTTGGAATCACAAAAGGTACTTCATTGTACAATAAAATAGTGGATTCGATAGTCATTTGGGTTTCAAACAGGGGCAGTTCTCAAGAGTCATTGGCCTTATCGGTACATATTATTAGGCAACATACCAAGATTCACTGCAATCGGTGCTTTCGGAGGGATTTGATATTGGAGGTGGAATTGAGGGAGATGGCTTTGATGGAGAGAGCTCTGAGGGAATCGGAAGCCGAGAGAATGAAGAAAATGATGGTACCAGCGAGTGAGTCAGCGATCAAGAACCTTTTGAAGAGGGTAAGGGTCGAGGAGGAGGAAAAGGAAAGTACAAGAAAAAGAAGAAAATCTAGTAGTAGTAGTAGTGAGGTGGGTGGTGGTGGGTGTTGTACTGTTTGTTTGGAGCCTCTGGGATCATATGCGACTGAGATGCCTTGCAAACATGCGTTTCATGAAGATTGCATAGTGGGATGGCTGAGACTTAGTCACTATTGTCCACTCTGCAGATCCGAGGTGCCAACTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

265

Amino Acids

30.62

Weight (kDa)

8.3

Isoelectric Point (pI)

67.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 219 - 259 2.2e-10 Ring finger domain
zf-rbx1 PF12678 219 - 259 5.3e-08 RING-H2 zinc finger domain
zf-C3HC4 PF00097 220 - 258 7.3e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 220 - 258 2.7e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 220 - 245 7.2e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31701
rosa_chinensis RchiOBHm_Chr4g0440251
rosa_laevigata RLG00000006194
rosa_multiflora Rmu_sc0001685.1_g000033
rosa_roxburghii Rroxscaffold_1G00006460 Rroxscaffold_5G00381170
rosa_samantha Rh4AG376300 Rh4CG403900 Rh4DG383000
rosa_wichuraiana Rw4G032210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 529
AccB1I GGYRCC 2 cut(s) 529, 784
AccI GTMKAC 1 cut(s) 114
AclWI GGATC 3 cut(s) 179, 691, 771
AfaI GTAC 6 cut(s) 301, 311, 387, 531, 601, 661
AfiI CCNNNNNNNGG 1 cut(s) 284
AgsI TTSAA 2 cut(s) 348, 565
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 3 cut(s) 76, 132, 488
AluI AGCT 3 cut(s) 76, 132, 488
Alw21I GWGCWC 1 cut(s) 490
Alw26I GTCTC 1 cut(s) 742
AlwI GGATC 3 cut(s) 179, 691, 771
AoxI GGCC 1 cut(s) 375
ApeKI GCWGC 1 cut(s) 274
Asp718I GGTACC 1 cut(s) 529
AspLEI GCGC 1 cut(s) 213
AsuC2I CCSGG 1 cut(s) 256
BanI GGYRCC 2 cut(s) 529, 784
BanII GRGCYC 1 cut(s) 490
BauI CACGAG 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 490
BbvI GCAGC 1 cut(s) 261
BccI CCATC 5 cut(s) 287, 463, 472, 520, 735
BcgI CGANNNNNNTGC 2 cut(s) 682, 716
BciT130I CCWGG 1 cut(s) 189
BcnI CCSGG 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 742
BfaI CTAG 4 cut(s) 54, 68, 149, 621
BfmI CTRYAG 1 cut(s) 772
BisI GCNGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 276
Bme1390I CCNGG 2 cut(s) 189, 256
BmiI GGNNCC 3 cut(s) 531, 675, 786
BmrFI CCNGG 2 cut(s) 189, 256
BmsI GCATC 1 cut(s) 690
BpiI GAAGAC 1 cut(s) 115
BpuEI CTTGAG 1 cut(s) 348
BpuMI CCSGG 1 cut(s) 256
BsaJI CCNNGG 2 cut(s) 188, 780
Bsc4I CCNNNNNNNGG 1 cut(s) 284
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 2 cut(s) 188, 780
BseGI GGATG 1 cut(s) 746
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMII CTCAG 3 cut(s) 482, 687, 737
BseRI GAGGAG 2 cut(s) 596, 599
BseXI GCAGC 1 cut(s) 261
BshFI GGCC 1 cut(s) 377
BshNI GGYRCC 2 cut(s) 529, 784
BsiHKAI GWGCWC 1 cut(s) 490
BsiSI CCGG 2 cut(s) 255, 267
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 742
BsnI GGCC 1 cut(s) 377
Bsp1286I GDGCHC 1 cut(s) 490
Bsp1407I TGTACA 1 cut(s) 309
Bsp143I GATC 4 cut(s) 184, 549, 683, 776
BspANI GGCC 1 cut(s) 377
BspCNI CTCAG 3 cut(s) 483, 688, 738
BspHI TCATGA 1 cut(s) 721
BspLI GGNNCC 3 cut(s) 531, 675, 786
BspMAI CTGCAG 1 cut(s) 776
BspPI GGATC 3 cut(s) 179, 691, 771
BspT107I GGYRCC 2 cut(s) 529, 784
BsrGI TGTACA 1 cut(s) 309
BssECI CCNNGG 2 cut(s) 188, 780
BssMI GATC 4 cut(s) 184, 549, 683, 776
BssSI CACGAG 1 cut(s) 17
Bst2BI CACGAG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 664
Bst6I CTCTTC 1 cut(s) 560
BstAPI GCANNNNNTGC 1 cut(s) 426
BstAUI TGTACA 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 230, 272
BstDEI CTNAG 4 cut(s) 491, 696, 746, 752
BstF5I GGATG 1 cut(s) 746
BstHHI GCGC 1 cut(s) 213
BstKTI GATC 4 cut(s) 187, 552, 686, 779
BstMAI GTCTC 1 cut(s) 742
BstMBI GATC 4 cut(s) 184, 549, 683, 776
BstMWI GCNNNNNNNGC 1 cut(s) 426
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 2 cut(s) 232, 716
BstSCI CCNGG 2 cut(s) 187, 254
BstSFI CTRYAG 1 cut(s) 772
BstV1I GCAGC 1 cut(s) 261
BstV2I GAAGAC 1 cut(s) 115
BstX2I RGATCY 2 cut(s) 184, 776
BstXI CCANNNNNNTGG 1 cut(s) 188
BstYI RGATCY 2 cut(s) 184, 776
BsuRI GGCC 1 cut(s) 377
BtsCI GGATG 1 cut(s) 746
BtsI GCAGTG 1 cut(s) 415
BtsIMutI CAGTG 1 cut(s) 415
Cac8I GCNNGC 2 cut(s) 230, 272
CciI TCATGA 1 cut(s) 721
CfoI GCGC 1 cut(s) 213
Csp6I GTAC 6 cut(s) 300, 310, 386, 530, 600, 660
CviAII CATG 3 cut(s) 229, 713, 722
CviQI GTAC 6 cut(s) 300, 310, 386, 530, 600, 660
DdeI CTNAG 4 cut(s) 491, 696, 746, 752
DpnI GATC 4 cut(s) 186, 551, 685, 778
DpnII GATC 4 cut(s) 184, 549, 683, 776
Eam1104I CTCTTC 1 cut(s) 560
EarI CTCTTC 1 cut(s) 560
Ecl136II GAGCTC 1 cut(s) 488
Eco24I GRGCYC 1 cut(s) 490
Eco53kI GAGCTC 1 cut(s) 488
EcoICRI GAGCTC 1 cut(s) 488
EcoRII CCWGG 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 490
FaeI CATG 3 cut(s) 232, 716, 725
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FatI CATG 3 cut(s) 228, 712, 721
FauNDI CATATG 1 cut(s) 688
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 275
FokI GGATG 1 cut(s) 753
FriOI GRGCYC 1 cut(s) 490
Fsp4HI GCNGC 1 cut(s) 275
FspBI CTAG 4 cut(s) 54, 68, 149, 621
GlaI GCGC 1 cut(s) 212
GluI GCNGC 1 cut(s) 275
HaeIII GGCC 1 cut(s) 377
HapII CCGG 2 cut(s) 255, 267
HhaI GCGC 1 cut(s) 213
Hin1II CATG 3 cut(s) 232, 716, 725
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HinfI GANTC 8 cut(s) 13, 194, 288, 326, 368, 412, 497, 542
HpaII CCGG 2 cut(s) 255, 267
Hpy166II GTNNAC 2 cut(s) 115, 767
Hpy188I TCNGA 4 cut(s) 435, 492, 502, 781
Hpy188III TCNNGA 4 cut(s) 17, 365, 553, 722
Hpy8I GTNNAC 2 cut(s) 115, 767
HpyCH4III ACNGT 1 cut(s) 664
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 4 cut(s) 420, 708, 732, 774
HpyF10VI GCNNNNNNNGC 1 cut(s) 426
HpyF3I CTNAG 4 cut(s) 491, 696, 746, 752
HpySE526I ACGT 1 cut(s) 251
Hsp92II CATG 3 cut(s) 232, 716, 725
HspAI GCGC 1 cut(s) 211
KpnI GGTACC 1 cut(s) 533
Kzo9I GATC 4 cut(s) 184, 549, 683, 776
LmnI GCTCC 1 cut(s) 673
Lsp1109I GCAGC 1 cut(s) 261
LweI GCATC 1 cut(s) 690
MaeI CTAG 4 cut(s) 54, 68, 149, 621
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 2 cut(s) 38, 755
MalI GATC 4 cut(s) 186, 551, 685, 778
MboI GATC 4 cut(s) 184, 549, 683, 776
MboII GAAGA 6 cut(s) 115, 211, 529, 577, 624, 737
MflI RGATCY 2 cut(s) 184, 776
MhlI GDGCHC 1 cut(s) 490
MluCI AATT 4 cut(s) 78, 142, 458, 793
MlyI GAGTC 3 cut(s) 203, 377, 551
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 2 cut(s) 255, 267
MspR9I CCNGG 2 cut(s) 189, 256
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 426
NciI CCSGG 1 cut(s) 256
NdeI CATATG 1 cut(s) 688
NdeII GATC 4 cut(s) 184, 549, 683, 776
NlaIII CATG 3 cut(s) 232, 716, 725
NlaIV GGNNCC 3 cut(s) 531, 675, 786
NmeAIII GCCGAG 1 cut(s) 532
NmuCI GTSAC 2 cut(s) 38, 755
NspI RCATGY 2 cut(s) 232, 716
PaeI GCATGC 1 cut(s) 232
PagI TCATGA 1 cut(s) 721
PfeI GAWTC 5 cut(s) 13, 288, 326, 412, 497
PflFI GACNNNGTC 1 cut(s) 753
PfoI TCCNGGA 1 cut(s) 254
PkrI GCNGC 1 cut(s) 276
PleI GAGTC 3 cut(s) 202, 376, 550
PpsI GAGTC 3 cut(s) 202, 376, 550
Psp124BI GAGCTC 1 cut(s) 490
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 3 cut(s) 531, 675, 786
PstI CTGCAG 1 cut(s) 776
PsuI RGATCY 2 cut(s) 184, 776
PsyI GACNNNGTC 1 cut(s) 753
RsaI GTAC 6 cut(s) 301, 311, 387, 531, 601, 661
RsaNI GTAC 6 cut(s) 300, 310, 386, 530, 600, 660
RseI CAYNNNNRTG 1 cut(s) 132
SacI GAGCTC 1 cut(s) 490
SatI GCNGC 1 cut(s) 275
Sau3AI GATC 4 cut(s) 184, 549, 683, 776
SchI GAGTC 3 cut(s) 203, 377, 551
ScrFI CCNGG 2 cut(s) 189, 256
SduI GDGCHC 1 cut(s) 490
SetI ASST 9 cut(s) 78, 134, 254, 301, 456, 490, 561, 642, 786
SfaNI GCATC 1 cut(s) 690
SfcI CTRYAG 1 cut(s) 772
SmiMI CAYNNNNRTG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 363
SmoI CTYRAG 1 cut(s) 363
SphI GCATGC 1 cut(s) 232
Sse9I AATT 4 cut(s) 78, 142, 458, 793
SspMI CTAG 4 cut(s) 54, 68, 149, 621
SstI GAGCTC 1 cut(s) 490
StyD4I CCNGG 2 cut(s) 187, 254
TaaI ACNGT 1 cut(s) 664
TaiI ACGT 1 cut(s) 254
TaqI TCGA 4 cut(s) 33, 197, 329, 579
TasI AATT 4 cut(s) 78, 142, 458, 793
TatI WGTACW 3 cut(s) 309, 599, 659
TfiI GAWTC 5 cut(s) 13, 288, 326, 412, 497
TscAI CASTG 1 cut(s) 422
TseFI GTSAC 2 cut(s) 38, 755
TseI GCWGC 1 cut(s) 274
Tsp45I GTSAC 2 cut(s) 38, 755
TspDTI ATGAA 5 cut(s) 71, 294, 530, 710, 738
TspRI CASTG 1 cut(s) 422
Tth111I GACNNNGTC 1 cut(s) 753
XceI RCATGY 2 cut(s) 232, 716
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 4 cut(s) 54, 68, 149, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.