Rh4DG383000

finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0018428
Physical Location & Seq
Forward (+)
60037253 .. 60038426
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG383000.1

Sequence Viewer

Length: 804 bp
ATGGAGATAGTGAATCACGAGGAAAATCACTTCGATTGTCACATCAATCCCACTAGAATACCAGTACTAGACCAGCTTCATCGTCAAGGGGAACTTTGGATAGAGTTTGTCTACAAAGTCTTCCACGGCTATGAGAATAATTCACTAGACAATCAAAGAACTCGTATCAGGCAATACCAAGATCCTGGGGAGTCGAAGAAAGAACTGCACCGATATGAGATGAGCATGCTAAAGAGCCACAGCCAAACGTCCGGGATTATGTCCGGCGTGCTGCCCATCTTTGGAATCACAAAAGGTACTTCTTTGTACAATAAAATAGTGGATGCGATAGTCATTTGGGTTTCAAACAGGGGCAGTTCTCAAGAGTCATTGGCCTTATCGGTACATATTATTAGGCAACATACCAAGATTCACTGCAATCGGTGCTTTCGGAGGGATTTGATATTGGAGGTGGAATTGAGGGAGATGGCTTTAATGGAGAGAGCTCTGAGGGAATCGGAAGCCGAGAGAATGAAGAAAATGATGGTACCAGCGAGTGAGTCAGCGATCAAGAACCTTTTGAAGAGGGTAATGGTCGAGGAGGAGGAAAAGGAAAGTACAAGAAAAAGAAGAAAATCTAGTAGTAGTAGTAGTAGTAGTAGTGAGGTGGGTGGTGGTGGGTGTTGTACTGTTTGTTTGGAGCCTCTGGGATCATATGCGACTGAGATGCCTTGCAAACATGCGTTTCATGAAGATTGCATAGTGGGATGGCTGAGACTTAGTCACTATTGTCCACTCTGCAGATCCGAGGTGCCAACTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

267

Amino Acids

30.71

Weight (kDa)

7.63

Isoelectric Point (pI)

62.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 221 - 261 2.2e-10 Ring finger domain
zf-rbx1 PF12678 221 - 261 5.4e-08 RING-H2 zinc finger domain
zf-C3HC4 PF00097 222 - 260 7.4e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 222 - 260 2.7e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 222 - 247 7.2e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31701
rosa_chinensis RchiOBHm_Chr4g0440251
rosa_laevigata RLG00000006194
rosa_multiflora Rmu_sc0001685.1_g000033
rosa_roxburghii Rroxscaffold_1G00006460 Rroxscaffold_5G00381170
rosa_samantha Rh4AG376300 Rh4CG403900 Rh4DG383000
rosa_wichuraiana Rw4G032210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 526
AccB1I GGYRCC 2 cut(s) 526, 790
AccI GTMKAC 1 cut(s) 111
AclWI GGATC 3 cut(s) 176, 697, 777
AfaI GTAC 7 cut(s) 66, 298, 308, 384, 528, 598, 667
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 345, 562
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 2 cut(s) 76, 485
AluI AGCT 2 cut(s) 76, 485
Alw21I GWGCWC 1 cut(s) 487
Alw26I GTCTC 1 cut(s) 748
AlwI GGATC 3 cut(s) 176, 697, 777
AoxI GGCC 1 cut(s) 372
ApeKI GCWGC 1 cut(s) 271
Asp718I GGTACC 1 cut(s) 526
AsuC2I CCSGG 1 cut(s) 253
BanI GGYRCC 2 cut(s) 526, 790
BanII GRGCYC 1 cut(s) 487
BauI CACGAG 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 487
BbvI GCAGC 1 cut(s) 258
BccI CCATC 4 cut(s) 284, 460, 517, 741
BceAI ACGGC 1 cut(s) 142
BcgI CGANNNNNNTGC 2 cut(s) 688, 722
BciT130I CCWGG 1 cut(s) 186
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 748
BfaI CTAG 4 cut(s) 54, 68, 146, 618
BfmI CTRYAG 1 cut(s) 778
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
BmcAI AGTACT 1 cut(s) 66
Bme1390I CCNGG 2 cut(s) 186, 253
BmiI GGNNCC 3 cut(s) 528, 681, 792
BmrFI CCNGG 2 cut(s) 186, 253
BmsI GCATC 2 cut(s) 313, 696
BpiI GAAGAC 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 253
BsaJI CCNNGG 3 cut(s) 124, 185, 786
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 62
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 3 cut(s) 124, 185, 786
BseGI GGATG 2 cut(s) 328, 752
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMII CTCAG 3 cut(s) 479, 693, 743
BseNI ACTGG 1 cut(s) 62
BseRI GAGGAG 2 cut(s) 593, 596
BseXI GCAGC 1 cut(s) 258
BsgI GTGCAG 1 cut(s) 191
BshFI GGCC 1 cut(s) 374
BshNI GGYRCC 2 cut(s) 526, 790
BsiHKAI GWGCWC 1 cut(s) 487
BsiSI CCGG 2 cut(s) 252, 264
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 748
BsnI GGCC 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 487
Bsp1407I TGTACA 1 cut(s) 306
Bsp143I GATC 4 cut(s) 181, 546, 689, 782
BspANI GGCC 1 cut(s) 374
BspCNI CTCAG 3 cut(s) 480, 694, 744
BspHI TCATGA 1 cut(s) 727
BspLI GGNNCC 3 cut(s) 528, 681, 792
BspMAI CTGCAG 1 cut(s) 782
BspPI GGATC 3 cut(s) 176, 697, 777
BspT107I GGYRCC 2 cut(s) 526, 790
BsrGI TGTACA 1 cut(s) 306
BsrI ACTGG 1 cut(s) 62
BssECI CCNNGG 3 cut(s) 124, 185, 786
BssMI GATC 4 cut(s) 181, 546, 689, 782
BssSI CACGAG 1 cut(s) 17
Bst2BI CACGAG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 670
Bst6I CTCTTC 1 cut(s) 557
BstAPI GCANNNNNTGC 1 cut(s) 423
BstAUI TGTACA 1 cut(s) 306
BstC8I GCNNGC 2 cut(s) 227, 269
BstDEI CTNAG 4 cut(s) 488, 702, 752, 758
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 2 cut(s) 328, 752
BstKTI GATC 4 cut(s) 184, 549, 692, 785
BstMAI GTCTC 1 cut(s) 748
BstMBI GATC 4 cut(s) 181, 546, 689, 782
BstMWI GCNNNNNNNGC 1 cut(s) 423
BstNI CCWGG 1 cut(s) 186
BstNSI RCATGY 2 cut(s) 229, 722
BstSCI CCNGG 2 cut(s) 184, 251
BstSFI CTRYAG 1 cut(s) 778
BstV1I GCAGC 1 cut(s) 258
BstV2I GAAGAC 1 cut(s) 112
BstX2I RGATCY 2 cut(s) 181, 782
BstXI CCANNNNNNTGG 1 cut(s) 185
BstYI RGATCY 2 cut(s) 181, 782
BsuRI GGCC 1 cut(s) 374
BtgI CCRYGG 1 cut(s) 124
BtsCI GGATG 2 cut(s) 328, 752
BtsI GCAGTG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 412
Cac8I GCNNGC 2 cut(s) 227, 269
CciI TCATGA 1 cut(s) 727
Csp6I GTAC 7 cut(s) 65, 297, 307, 383, 527, 597, 666
CviAII CATG 3 cut(s) 226, 719, 728
CviQI GTAC 7 cut(s) 65, 297, 307, 383, 527, 597, 666
DdeI CTNAG 4 cut(s) 488, 702, 752, 758
DpnI GATC 4 cut(s) 183, 548, 691, 784
DpnII GATC 4 cut(s) 181, 546, 689, 782
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
Ecl136II GAGCTC 1 cut(s) 485
Eco24I GRGCYC 1 cut(s) 487
Eco53kI GAGCTC 1 cut(s) 485
EcoICRI GAGCTC 1 cut(s) 485
EcoRII CCWGG 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 487
FaeI CATG 3 cut(s) 229, 722, 731
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FatI CATG 3 cut(s) 225, 718, 727
FauNDI CATATG 1 cut(s) 694
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 272
FokI GGATG 2 cut(s) 335, 759
FriOI GRGCYC 1 cut(s) 487
Fsp4HI GCNGC 1 cut(s) 272
FspBI CTAG 4 cut(s) 54, 68, 146, 618
GluI GCNGC 1 cut(s) 272
HaeIII GGCC 1 cut(s) 374
HapII CCGG 2 cut(s) 252, 264
Hin1II CATG 3 cut(s) 229, 722, 731
HinfI GANTC 7 cut(s) 13, 191, 285, 365, 409, 494, 539
HpaII CCGG 2 cut(s) 252, 264
Hpy166II GTNNAC 2 cut(s) 112, 773
Hpy188I TCNGA 4 cut(s) 432, 489, 499, 787
Hpy188III TCNNGA 4 cut(s) 17, 362, 550, 728
Hpy8I GTNNAC 2 cut(s) 112, 773
HpyCH4III ACNGT 1 cut(s) 670
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 5 cut(s) 208, 417, 714, 738, 780
HpyF10VI GCNNNNNNNGC 1 cut(s) 423
HpyF3I CTNAG 4 cut(s) 488, 702, 752, 758
HpySE526I ACGT 1 cut(s) 248
Hsp92II CATG 3 cut(s) 229, 722, 731
KpnI GGTACC 1 cut(s) 530
Kzo9I GATC 4 cut(s) 181, 546, 689, 782
LmnI GCTCC 1 cut(s) 679
Lsp1109I GCAGC 1 cut(s) 258
LweI GCATC 2 cut(s) 313, 696
MaeI CTAG 4 cut(s) 54, 68, 146, 618
MaeII ACGT 1 cut(s) 248
MaeIII GTNAC 2 cut(s) 38, 761
MalI GATC 4 cut(s) 183, 548, 691, 784
MboI GATC 4 cut(s) 181, 546, 689, 782
MboII GAAGA 6 cut(s) 112, 208, 526, 574, 621, 743
MflI RGATCY 2 cut(s) 181, 782
MhlI GDGCHC 1 cut(s) 487
MluCI AATT 3 cut(s) 139, 455, 799
MlyI GAGTC 3 cut(s) 200, 374, 548
MseI TTAA 1 cut(s) 473
MslI CAYNNNNRTG 2 cut(s) 129, 213
MspI CCGG 2 cut(s) 252, 264
MspR9I CCNGG 2 cut(s) 186, 253
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 423
NciI CCSGG 1 cut(s) 253
NdeI CATATG 1 cut(s) 694
NdeII GATC 4 cut(s) 181, 546, 689, 782
NlaIII CATG 3 cut(s) 229, 722, 731
NlaIV GGNNCC 3 cut(s) 528, 681, 792
NmeAIII GCCGAG 1 cut(s) 529
NmuCI GTSAC 2 cut(s) 38, 761
NspI RCATGY 2 cut(s) 229, 722
PaeI GCATGC 1 cut(s) 229
PagI TCATGA 1 cut(s) 727
PfeI GAWTC 4 cut(s) 13, 285, 409, 494
PflFI GACNNNGTC 1 cut(s) 759
PfoI TCCNGGA 1 cut(s) 251
PkrI GCNGC 1 cut(s) 273
PleI GAGTC 3 cut(s) 199, 373, 547
PpsI GAGTC 3 cut(s) 199, 373, 547
Psp124BI GAGCTC 1 cut(s) 487
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 3 cut(s) 528, 681, 792
PstI CTGCAG 1 cut(s) 782
PsuI RGATCY 2 cut(s) 181, 782
PsyI GACNNNGTC 1 cut(s) 759
RsaI GTAC 7 cut(s) 66, 298, 308, 384, 528, 598, 667
RsaNI GTAC 7 cut(s) 65, 297, 307, 383, 527, 597, 666
RseI CAYNNNNRTG 2 cut(s) 129, 213
SacI GAGCTC 1 cut(s) 487
SaqAI TTAA 1 cut(s) 473
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 4 cut(s) 181, 546, 689, 782
ScaI AGTACT 1 cut(s) 66
SchI GAGTC 3 cut(s) 200, 374, 548
ScrFI CCNGG 2 cut(s) 186, 253
SduI GDGCHC 1 cut(s) 487
SetI ASST 8 cut(s) 78, 251, 298, 453, 487, 558, 648, 792
SfaNI GCATC 2 cut(s) 313, 696
SfcI CTRYAG 1 cut(s) 778
SmiMI CAYNNNNRTG 2 cut(s) 129, 213
SmlI CTYRAG 1 cut(s) 360
SmoI CTYRAG 1 cut(s) 360
SphI GCATGC 1 cut(s) 229
Sse9I AATT 3 cut(s) 139, 455, 799
SspMI CTAG 4 cut(s) 54, 68, 146, 618
SstI GAGCTC 1 cut(s) 487
StyD4I CCNGG 2 cut(s) 184, 251
TaaI ACNGT 1 cut(s) 670
TaiI ACGT 1 cut(s) 251
TaqI TCGA 3 cut(s) 33, 194, 576
TasI AATT 3 cut(s) 139, 455, 799
TatI WGTACW 4 cut(s) 64, 306, 596, 665
TfiI GAWTC 4 cut(s) 13, 285, 409, 494
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TscAI CASTG 1 cut(s) 419
TseFI GTSAC 2 cut(s) 38, 761
TseI GCWGC 1 cut(s) 271
Tsp45I GTSAC 2 cut(s) 38, 761
TspDTI ATGAA 4 cut(s) 68, 527, 716, 744
TspRI CASTG 1 cut(s) 419
Tth111I GACNNNGTC 1 cut(s) 759
XceI RCATGY 2 cut(s) 229, 722
XmiI GTMKAC 1 cut(s) 111
XspI CTAG 4 cut(s) 54, 68, 146, 618
ZrmI AGTACT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.