Rroxscaffold_1G00006460

finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0018428
Physical Location & Seq
Reverse (-)
8515176 .. 8518380
3205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00006460.1

Sequence Viewer

Length: 741 bp
ATGGCTATAATTGCCAACCTGGGAAAAAAATCTTTCATGCTAGATCCCCATTTCTTCAATATGTACATTATTACCTTGACGTTCTGCTTCAATCTGATGAAAGGAAAATGCGAGCCTGCGCTTATCCAAGCCTGTGAAACCAAGTTTGATGCAACCCTCAGGGCCGGCCTTGTCAGGCAATACCAAGATCCTGGGGAGTCGAAGAAAGAACTACGCCGATATGAGATGAGCATGCTAAAGAGCCAGAGCCAAATGTCCAGGATTATGTCCAGCGTGCTGCCCATCTTTGGAATCACAAAAGGTACTTCATTGTACAATACAATAGTGGATGCGATAGTCATTTTGGTTTCAAATAGGGGCAGTAGTTCTCAAGAGTCATTGGCCTTATCGGTACATATTATCAGGCAACACACCAAGATTCACTGCAATCGGTGCTTTCAGAGGGATTTGATATTGGAGGTGCCATTGAGGGAGATGGCTTTGATGGAGAGAGCTCTGAGGGAATCGGAAGACGAGAGAATGAAGAAAATGATGGTACCAGCGAGTGAGTCAGCGATCAAGAACCTTTTGAAGAGGGTAAGGGTCGAGGAGGAGGAAAAGGAAAGTACAAGAAAAAAAGAAAATCTACCAGTAGTAGTAGTAAGGTGGGTGTTGGTAGGTGTTGTACTGTTTGTTTGGAGCGTCTGGGATCATATGCGACTGAGATGCCTTGCAAACATGCGTTTCATGAAGCTTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

246

Amino Acids

28.48

Weight (kDa)

9.59

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31701
rosa_chinensis RchiOBHm_Chr4g0440251
rosa_laevigata RLG00000006194
rosa_multiflora Rmu_sc0001685.1_g000033
rosa_roxburghii Rroxscaffold_1G00006460 Rroxscaffold_5G00381170
rosa_samantha Rh4AG376300 Rh4CG403900 Rh4DG383000
rosa_wichuraiana Rw4G032210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 535
AccB1I GGYRCC 2 cut(s) 460, 535
AclWI GGATC 3 cut(s) 38, 182, 696
AfaI GTAC 7 cut(s) 65, 304, 314, 393, 537, 607, 666
AfiI CCNNNNNNNGG 1 cut(s) 287
AgsI TTSAA 4 cut(s) 58, 91, 351, 571
AjnI CCWGG 3 cut(s) 18, 190, 257
AluBI AGCT 2 cut(s) 494, 733
AluI AGCT 2 cut(s) 494, 733
Alw21I GWGCWC 1 cut(s) 496
AlwI GGATC 3 cut(s) 38, 182, 696
AoxI GGCC 3 cut(s) 162, 166, 381
ApeKI GCWGC 1 cut(s) 277
Asp718I GGTACC 1 cut(s) 535
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 162
AxyI CCTNAGG 1 cut(s) 158
BanI GGYRCC 2 cut(s) 460, 535
BanII GRGCYC 1 cut(s) 496
BbsI GAAGAC 1 cut(s) 516
Bbv12I GWGCWC 1 cut(s) 496
BbvI GCAGC 1 cut(s) 264
BccI CCATC 4 cut(s) 290, 469, 478, 526
BcgI CGANNNNNNTGC 2 cut(s) 687, 721
BciT130I CCWGG 3 cut(s) 20, 192, 259
BfaI CTAG 1 cut(s) 41
BisI GCNGC 1 cut(s) 278
BlsI GCNGC 1 cut(s) 279
Bme1390I CCNGG 3 cut(s) 20, 192, 259
BmgT120I GGNCC 1 cut(s) 162
BmiI GGNNCC 2 cut(s) 462, 537
BmrFI CCNGG 3 cut(s) 20, 192, 259
BmsI GCATC 3 cut(s) 139, 319, 695
BpiI GAAGAC 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 354
BsaJI CCNNGG 2 cut(s) 19, 191
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 629
Bse21I CCTNAGG 1 cut(s) 158
BseBI CCWGG 3 cut(s) 20, 192, 259
BseDI CCNNGG 2 cut(s) 19, 191
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMII CTCAG 3 cut(s) 172, 488, 692
BseNI ACTGG 1 cut(s) 629
BseRI GAGGAG 2 cut(s) 602, 605
BseXI GCAGC 1 cut(s) 264
BshFI GGCC 3 cut(s) 164, 168, 383
BshNI GGYRCC 2 cut(s) 460, 535
BsiHKAI GWGCWC 1 cut(s) 496
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 287
BsnI GGCC 3 cut(s) 164, 168, 383
Bsp1286I GDGCHC 1 cut(s) 496
Bsp1407I TGTACA 2 cut(s) 63, 312
Bsp143I GATC 4 cut(s) 43, 187, 555, 688
BspANI GGCC 3 cut(s) 164, 168, 383
BspCNI CTCAG 3 cut(s) 171, 489, 693
BspHI TCATGA 1 cut(s) 726
BspLI GGNNCC 2 cut(s) 462, 537
BspPI GGATC 3 cut(s) 38, 182, 696
BspT107I GGYRCC 2 cut(s) 460, 535
BsrFI RCCGGY 1 cut(s) 164
BsrGI TGTACA 2 cut(s) 63, 312
BsrI ACTGG 1 cut(s) 629
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 19, 191
BssMI GATC 4 cut(s) 43, 187, 555, 688
Bst2UI CCWGG 3 cut(s) 20, 192, 259
Bst4CI ACNGT 1 cut(s) 669
Bst6I CTCTTC 1 cut(s) 566
BstAPI GCANNNNNTGC 1 cut(s) 432
BstAUI TGTACA 2 cut(s) 63, 312
BstC8I GCNNGC 6 cut(s) 113, 117, 166, 233, 275, 735
BstDEI CTNAG 3 cut(s) 158, 497, 701
BstF5I GGATG 1 cut(s) 334
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 4 cut(s) 46, 190, 558, 691
BstMBI GATC 4 cut(s) 43, 187, 555, 688
BstMWI GCNNNNNNNGC 2 cut(s) 11, 432
BstNI CCWGG 3 cut(s) 20, 192, 259
BstNSI RCATGY 2 cut(s) 235, 721
BstSCI CCNGG 3 cut(s) 18, 190, 257
BstV1I GCAGC 1 cut(s) 264
BstV2I GAAGAC 1 cut(s) 516
BstX2I RGATCY 2 cut(s) 43, 187
BstXI CCANNNNNNTGG 1 cut(s) 191
BstYI RGATCY 2 cut(s) 43, 187
Bsu36I CCTNAGG 1 cut(s) 158
BsuRI GGCC 3 cut(s) 164, 168, 383
BtsCI GGATG 1 cut(s) 334
BtsI GCAGTG 1 cut(s) 421
BtsIMutI CAGTG 1 cut(s) 421
Cac8I GCNNGC 6 cut(s) 113, 117, 166, 233, 275, 735
CciI TCATGA 1 cut(s) 726
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 162
CseI GACGC 1 cut(s) 670
Csp6I GTAC 7 cut(s) 64, 303, 313, 392, 536, 606, 665
CviAII CATG 4 cut(s) 37, 232, 718, 727
CviQI GTAC 7 cut(s) 64, 303, 313, 392, 536, 606, 665
DdeI CTNAG 3 cut(s) 158, 497, 701
DpnI GATC 4 cut(s) 45, 189, 557, 690
DpnII GATC 4 cut(s) 43, 187, 555, 688
Eam1104I CTCTTC 1 cut(s) 566
EarI CTCTTC 1 cut(s) 566
Ecl136II GAGCTC 1 cut(s) 494
Eco24I GRGCYC 1 cut(s) 496
Eco53kI GAGCTC 1 cut(s) 494
Eco81I CCTNAGG 1 cut(s) 158
EcoICRI GAGCTC 1 cut(s) 494
EcoRII CCWGG 3 cut(s) 18, 190, 257
EcoT38I GRGCYC 1 cut(s) 496
FaeI CATG 4 cut(s) 40, 235, 721, 730
FatI CATG 4 cut(s) 36, 231, 717, 726
FauNDI CATATG 1 cut(s) 693
Fnu4HI GCNGC 1 cut(s) 278
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 1 cut(s) 496
FseI GGCCGGCC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 278
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 278
HaeIII GGCC 3 cut(s) 164, 168, 383
HapII CCGG 1 cut(s) 165
HgaI GACGC 1 cut(s) 670
HhaI GCGC 1 cut(s) 121
Hin1II CATG 4 cut(s) 40, 235, 721, 730
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 731
HinfI GANTC 6 cut(s) 197, 291, 374, 418, 503, 548
HpaII CCGG 1 cut(s) 165
Hpy188I TCNGA 4 cut(s) 96, 441, 498, 508
Hpy188III TCNNGA 3 cut(s) 371, 559, 727
HpyCH4III ACNGT 1 cut(s) 669
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 4 cut(s) 152, 426, 713, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 432
HpyF3I CTNAG 3 cut(s) 158, 497, 701
HpySE526I ACGT 1 cut(s) 80
Hsp92II CATG 4 cut(s) 40, 235, 721, 730
HspAI GCGC 1 cut(s) 119
KpnI GGTACC 1 cut(s) 539
KroI GCCGGC 1 cut(s) 164
KroNI GCCGGC 1 cut(s) 166
Kzo9I GATC 4 cut(s) 43, 187, 555, 688
LmnI GCTCC 1 cut(s) 678
Lsp1109I GCAGC 1 cut(s) 264
LweI GCATC 3 cut(s) 139, 319, 695
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 80
MalI GATC 4 cut(s) 45, 189, 557, 690
MboI GATC 4 cut(s) 43, 187, 555, 688
MboII GAAGA 5 cut(s) 46, 214, 521, 535, 583
MflI RGATCY 2 cut(s) 43, 187
MhlI GDGCHC 1 cut(s) 496
MluCI AATT 1 cut(s) 9
MlyI GAGTC 3 cut(s) 206, 383, 557
MnlI CCTC 9 cut(s) 167, 435, 451, 462, 492, 567, 580, 583, 586
MroNI GCCGGC 1 cut(s) 164
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 3 cut(s) 20, 192, 259
MvaI CCWGG 3 cut(s) 20, 192, 259
MwoI GCNNNNNNNGC 2 cut(s) 11, 432
NaeI GCCGGC 1 cut(s) 166
NdeI CATATG 1 cut(s) 693
NdeII GATC 4 cut(s) 43, 187, 555, 688
NgoMIV GCCGGC 1 cut(s) 164
NlaIII CATG 4 cut(s) 40, 235, 721, 730
NlaIV GGNNCC 2 cut(s) 462, 537
NspI RCATGY 2 cut(s) 235, 721
PaeI GCATGC 1 cut(s) 235
PagI TCATGA 1 cut(s) 726
PdiI GCCGGC 1 cut(s) 166
PfeI GAWTC 3 cut(s) 291, 418, 503
PfoI TCCNGGA 1 cut(s) 257
PkrI GCNGC 1 cut(s) 279
PleI GAGTC 3 cut(s) 205, 382, 556
PpsI GAGTC 3 cut(s) 205, 382, 556
Psp124BI GAGCTC 1 cut(s) 496
Psp6I CCWGG 3 cut(s) 18, 190, 257
PspGI CCWGG 3 cut(s) 18, 190, 257
PspN4I GGNNCC 2 cut(s) 462, 537
PspPI GGNCC 1 cut(s) 162
PsuI RGATCY 2 cut(s) 43, 187
RigI GGCCGGCC 1 cut(s) 168
RsaI GTAC 7 cut(s) 65, 304, 314, 393, 537, 607, 666
RsaNI GTAC 7 cut(s) 64, 303, 313, 392, 536, 606, 665
SacI GAGCTC 1 cut(s) 496
SatI GCNGC 1 cut(s) 278
Sau3AI GATC 4 cut(s) 43, 187, 555, 688
Sau96I GGNCC 1 cut(s) 162
SchI GAGTC 3 cut(s) 206, 383, 557
ScrFI CCNGG 3 cut(s) 20, 192, 259
SduI GDGCHC 1 cut(s) 496
SfaNI GCATC 3 cut(s) 139, 319, 695
SmlI CTYRAG 1 cut(s) 369
SmoI CTYRAG 1 cut(s) 369
SphI GCATGC 1 cut(s) 235
Sse9I AATT 1 cut(s) 9
SspMI CTAG 1 cut(s) 41
SstI GAGCTC 1 cut(s) 496
StyD4I CCNGG 3 cut(s) 18, 190, 257
TaaI ACNGT 1 cut(s) 669
TaiI ACGT 1 cut(s) 83
TaqI TCGA 2 cut(s) 200, 585
TasI AATT 1 cut(s) 9
TatI WGTACW 4 cut(s) 63, 312, 605, 664
TfiI GAWTC 3 cut(s) 291, 418, 503
TscAI CASTG 1 cut(s) 428
TseI GCWGC 1 cut(s) 277
TspDTI ATGAA 5 cut(s) 25, 113, 297, 536, 715
TspRI CASTG 1 cut(s) 428
XceI RCATGY 2 cut(s) 235, 721
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.