Rmu_sc0001685.1_g000033

finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001685.1
OG0018428
Physical Location & Seq
Forward (+)
172521 .. 173318
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001685.1_g000033.1.cds

Sequence Viewer

Length: 798 bp
atggagatagtgaatcacgaggaaaatcacttcgattgtcacatcaatcccactagaataccagcactagaccagcttcatcgtcaaggggaactttggatagagtttgtctacaaagtcttccacggctatgagaataattcactagacaatcaaagaactcgtatcaggcaataccaagatcctggggagtcgaagaaagaactgcaccgatatgagatgagcatgctaaagagccacagccaaacggccgggattatgtccggcgtgctgcccatctttggaatcacaaaaggtacatctttgtacaataaaatagtggatgcgatagtcatttgggtttcaaacaggggcagttctcaagagtcattggccttatcggtacatattattaggcaacataccaagattcactgcaatcggtgctttctgagggatttgatattggaggtggaattgagggagatggctttgatggagagagctctgagggaatcggaagccgagagaatgaagaaaatgatggtaccagcgagtgagtcagcgatcaagaaccttttgaagagggtaagggtcgaggaggaggaaaaggaaagtacaagaaaaagaagaaaatctagtagtagtagtagtagtgaggtgggtggtggtgggtgttgtactgtttgtttggagcctctgggatcatatgcgactgagatgccttgcaaacatgcgtttcatgaagattgcatagtgggatggctgagacttagtcactattgtccactctgcagatccgaggtgccaactaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

265

Amino Acids

30.47

Weight (kDa)

7.63

Isoelectric Point (pI)

60.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31701
rosa_chinensis RchiOBHm_Chr4g0440251
rosa_laevigata RLG00000006194
rosa_multiflora Rmu_sc0001685.1_g000033
rosa_roxburghii Rroxscaffold_1G00006460 Rroxscaffold_5G00381170
rosa_samantha Rh4AG376300 Rh4CG403900 Rh4DG383000
rosa_wichuraiana Rw4G032210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 526
AccB1I GGYRCC 2 cut(s) 526, 784
AccI GTMKAC 1 cut(s) 111
AclWI GGATC 3 cut(s) 176, 691, 771
AcoI YGGCCR 1 cut(s) 249
AfaI GTAC 6 cut(s) 298, 308, 384, 528, 598, 661
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 345, 562
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 2 cut(s) 76, 485
AluI AGCT 2 cut(s) 76, 485
Alw21I GWGCWC 1 cut(s) 487
Alw26I GTCTC 1 cut(s) 742
AlwI GGATC 3 cut(s) 176, 691, 771
AoxI GGCC 2 cut(s) 249, 372
ApeKI GCWGC 1 cut(s) 271
Asp718I GGTACC 1 cut(s) 526
AsuC2I CCSGG 1 cut(s) 253
BanI GGYRCC 2 cut(s) 526, 784
BanII GRGCYC 1 cut(s) 487
BauI CACGAG 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 487
BbvI GCAGC 1 cut(s) 258
BccI CCATC 5 cut(s) 284, 460, 469, 517, 735
BceAI ACGGC 2 cut(s) 142, 264
BcgI CGANNNNNNTGC 2 cut(s) 682, 716
BciT130I CCWGG 1 cut(s) 186
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 742
BfaI CTAG 4 cut(s) 54, 68, 146, 618
BfmI CTRYAG 1 cut(s) 772
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
Bme1390I CCNGG 2 cut(s) 186, 253
BmiI GGNNCC 3 cut(s) 528, 675, 786
BmrFI CCNGG 2 cut(s) 186, 253
BmsI GCATC 2 cut(s) 313, 690
BpiI GAAGAC 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 253
BsaJI CCNNGG 3 cut(s) 124, 185, 780
Bsc4I CCNNNNNNNGG 1 cut(s) 281
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 3 cut(s) 124, 185, 780
BseGI GGATG 2 cut(s) 328, 746
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMII CTCAG 4 cut(s) 422, 479, 687, 737
BseRI GAGGAG 2 cut(s) 593, 596
BseX3I CGGCCG 1 cut(s) 249
BseXI GCAGC 1 cut(s) 258
BsgI GTGCAG 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 2 cut(s) 251, 374
BshNI GGYRCC 2 cut(s) 526, 784
BsiEI CGRYCG 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 487
BsiSI CCGG 2 cut(s) 252, 264
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 742
BsnI GGCC 2 cut(s) 251, 374
Bsp1286I GDGCHC 1 cut(s) 487
Bsp1407I TGTACA 1 cut(s) 306
Bsp143I GATC 4 cut(s) 181, 546, 683, 776
BspANI GGCC 2 cut(s) 251, 374
BspCNI CTCAG 4 cut(s) 423, 480, 688, 738
BspHI TCATGA 1 cut(s) 721
BspLI GGNNCC 3 cut(s) 528, 675, 786
BspMAI CTGCAG 1 cut(s) 776
BspPI GGATC 3 cut(s) 176, 691, 771
BspT107I GGYRCC 2 cut(s) 526, 784
BsrGI TGTACA 1 cut(s) 306
BssECI CCNNGG 3 cut(s) 124, 185, 780
BssMI GATC 4 cut(s) 181, 546, 683, 776
BssSI CACGAG 1 cut(s) 17
Bst2BI CACGAG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 664
Bst6I CTCTTC 1 cut(s) 557
BstAPI GCANNNNNTGC 1 cut(s) 423
BstAUI TGTACA 1 cut(s) 306
BstC8I GCNNGC 2 cut(s) 227, 269
BstDEI CTNAG 5 cut(s) 431, 488, 696, 746, 752
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 2 cut(s) 328, 746
BstKTI GATC 4 cut(s) 184, 549, 686, 779
BstMAI GTCTC 1 cut(s) 742
BstMBI GATC 4 cut(s) 181, 546, 683, 776
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 1 cut(s) 423
BstNI CCWGG 1 cut(s) 186
BstNSI RCATGY 2 cut(s) 229, 716
BstSCI CCNGG 2 cut(s) 184, 251
BstSFI CTRYAG 1 cut(s) 772
BstV1I GCAGC 1 cut(s) 258
BstV2I GAAGAC 1 cut(s) 112
BstX2I RGATCY 2 cut(s) 181, 776
BstXI CCANNNNNNTGG 1 cut(s) 185
BstYI RGATCY 2 cut(s) 181, 776
BstZI CGGCCG 1 cut(s) 249
BsuRI GGCC 2 cut(s) 251, 374
BtgI CCRYGG 1 cut(s) 124
BtsCI GGATG 2 cut(s) 328, 746
BtsI GCAGTG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 412
Cac8I GCNNGC 2 cut(s) 227, 269
CciI TCATGA 1 cut(s) 721
Csp6I GTAC 6 cut(s) 297, 307, 383, 527, 597, 660
CviAII CATG 3 cut(s) 226, 713, 722
CviQI GTAC 6 cut(s) 297, 307, 383, 527, 597, 660
DdeI CTNAG 5 cut(s) 431, 488, 696, 746, 752
DpnI GATC 4 cut(s) 183, 548, 685, 778
DpnII GATC 4 cut(s) 181, 546, 683, 776
EaeI YGGCCR 1 cut(s) 249
EagI CGGCCG 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
Ecl136II GAGCTC 1 cut(s) 485
EclXI CGGCCG 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 487
Eco52I CGGCCG 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 485
EcoICRI GAGCTC 1 cut(s) 485
EcoRII CCWGG 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 487
FaeI CATG 3 cut(s) 229, 716, 725
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FatI CATG 3 cut(s) 225, 712, 721
FauNDI CATATG 1 cut(s) 688
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 272
FokI GGATG 2 cut(s) 335, 753
FriOI GRGCYC 1 cut(s) 487
Fsp4HI GCNGC 1 cut(s) 272
FspBI CTAG 4 cut(s) 54, 68, 146, 618
GluI GCNGC 1 cut(s) 272
HaeIII GGCC 2 cut(s) 251, 374
HapII CCGG 2 cut(s) 252, 264
Hin1II CATG 3 cut(s) 229, 716, 725
HinfI GANTC 7 cut(s) 13, 191, 285, 365, 409, 494, 539
HpaII CCGG 2 cut(s) 252, 264
Hpy166II GTNNAC 2 cut(s) 112, 767
Hpy188I TCNGA 4 cut(s) 432, 489, 499, 781
Hpy188III TCNNGA 4 cut(s) 17, 362, 550, 722
Hpy8I GTNNAC 2 cut(s) 112, 767
HpyCH4III ACNGT 1 cut(s) 664
HpyCH4V TGCA 5 cut(s) 208, 417, 708, 732, 774
HpyF10VI GCNNNNNNNGC 1 cut(s) 423
HpyF3I CTNAG 5 cut(s) 431, 488, 696, 746, 752
Hsp92II CATG 3 cut(s) 229, 716, 725
KpnI GGTACC 1 cut(s) 530
Kzo9I GATC 4 cut(s) 181, 546, 683, 776
LmnI GCTCC 1 cut(s) 673
Lsp1109I GCAGC 1 cut(s) 258
LweI GCATC 2 cut(s) 313, 690
MaeI CTAG 4 cut(s) 54, 68, 146, 618
MaeIII GTNAC 2 cut(s) 38, 755
MalI GATC 4 cut(s) 183, 548, 685, 778
MboI GATC 4 cut(s) 181, 546, 683, 776
MboII GAAGA 6 cut(s) 112, 208, 526, 574, 621, 737
MflI RGATCY 2 cut(s) 181, 776
MhlI GDGCHC 1 cut(s) 487
MluCI AATT 3 cut(s) 139, 455, 793
MlyI GAGTC 3 cut(s) 200, 374, 548
MslI CAYNNNNRTG 2 cut(s) 129, 213
MspI CCGG 2 cut(s) 252, 264
MspR9I CCNGG 2 cut(s) 186, 253
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 423
NciI CCSGG 1 cut(s) 253
NdeI CATATG 1 cut(s) 688
NdeII GATC 4 cut(s) 181, 546, 683, 776
NlaIII CATG 3 cut(s) 229, 716, 725
NlaIV GGNNCC 3 cut(s) 528, 675, 786
NmeAIII GCCGAG 1 cut(s) 529
NmuCI GTSAC 2 cut(s) 38, 755
NspI RCATGY 2 cut(s) 229, 716
PaeI GCATGC 1 cut(s) 229
PagI TCATGA 1 cut(s) 721
PfeI GAWTC 4 cut(s) 13, 285, 409, 494
PflFI GACNNNGTC 1 cut(s) 753
PkrI GCNGC 1 cut(s) 273
PleI GAGTC 3 cut(s) 199, 373, 547
PpsI GAGTC 3 cut(s) 199, 373, 547
Psp124BI GAGCTC 1 cut(s) 487
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 3 cut(s) 528, 675, 786
PstI CTGCAG 1 cut(s) 776
PsuI RGATCY 2 cut(s) 181, 776
PsyI GACNNNGTC 1 cut(s) 753
RsaI GTAC 6 cut(s) 298, 308, 384, 528, 598, 661
RsaNI GTAC 6 cut(s) 297, 307, 383, 527, 597, 660
RseI CAYNNNNRTG 2 cut(s) 129, 213
SacI GAGCTC 1 cut(s) 487
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 4 cut(s) 181, 546, 683, 776
SchI GAGTC 3 cut(s) 200, 374, 548
ScrFI CCNGG 2 cut(s) 186, 253
SduI GDGCHC 1 cut(s) 487
SetI ASST 7 cut(s) 78, 298, 453, 487, 558, 642, 786
SfaNI GCATC 2 cut(s) 313, 690
SfcI CTRYAG 1 cut(s) 772
SmiMI CAYNNNNRTG 2 cut(s) 129, 213
SmlI CTYRAG 1 cut(s) 360
SmoI CTYRAG 1 cut(s) 360
SphI GCATGC 1 cut(s) 229
Sse9I AATT 3 cut(s) 139, 455, 793
SspMI CTAG 4 cut(s) 54, 68, 146, 618
SstI GAGCTC 1 cut(s) 487
StyD4I CCNGG 2 cut(s) 184, 251
TaaI ACNGT 1 cut(s) 664
TaqI TCGA 3 cut(s) 33, 194, 576
TasI AATT 3 cut(s) 139, 455, 793
TatI WGTACW 3 cut(s) 306, 596, 659
TfiI GAWTC 4 cut(s) 13, 285, 409, 494
TscAI CASTG 1 cut(s) 419
TseFI GTSAC 2 cut(s) 38, 755
TseI GCWGC 1 cut(s) 271
Tsp45I GTSAC 2 cut(s) 38, 755
TspDTI ATGAA 4 cut(s) 68, 527, 710, 738
TspRI CASTG 1 cut(s) 419
Tth111I GACNNNGTC 1 cut(s) 753
XceI RCATGY 2 cut(s) 229, 716
XmiI GTMKAC 1 cut(s) 111
XspI CTAG 4 cut(s) 54, 68, 146, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.