Rroxscaffold_5G00381170

finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018428
Physical Location & Seq
Forward (+)
61229674 .. 61230483
810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00381170.1

Sequence Viewer

Length: 810 bp
ATGGAGATAGTGAATCACGAGGAAAATCACTTCGATTGTCACATCAATCCCACTAGAATACCAGCACTAGACCAGATTCATCGTCAAGGGGAACTTTGGATAGAGTTTGTCTACAAAGTCTTCCACAGCTATGAGAATAATTCACTAGACAATCAAAGAACTCGTATCAGGCAATACCAAGATCCTGGGGAGTCGAAGAAAGAACTGCGCCGATATGAGATGAGCATGCTAAAGAGCCAGAGCCAAACGTCCGGGATTATGTCCGGCGTGCTGCCCATCTTTGGAATCACAAAAGGTACTTCATTGTACAATAAAATAGTGGATGCGATAGTCATTTGGGTTTCAAACAGGGGCAGTTCTCAATATTCATTGGCCTTATCGGTACATATTATTAGGCAACACACCAAGATTCACTGCGAGATTCACTGCAATCGGTGCTTTCGGAGGGATTTGATATTGGAGGTGGAATTATTGAGGGAGATGGCTTTGATGGAGAGAGCTCTGAGGGAATCGGAAGCCGAGAGAATGAAGAAAATGATGGTACCAGCGAGTGAGTCAGCGATCAAGAACCTTTTGAAGAGAGTAAGGGTCGAGGAGGAGGAAAAGGAAAGTACAAGAAAAAGAAGAAAATCTAGTAGTAGTAGTAGTGAGGTGGGTGGTGGTGGACGTTGTACTGTTTGTTTGGAGCCTCTGGGATCATATGCGACTGAGATGCCTTGCAAACATGCGTTTCATGAAGATTGCATAGTGGGATGGCTGAGACTTAGTCACTATTGTCCACTCTGCAGATCCGAGGTGCCAACTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

269

Amino Acids

31.17

Weight (kDa)

8.49

Isoelectric Point (pI)

65.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 223 - 263 1.6e-11 Ring finger domain
zf-C3HC4_2 PF13923 223 - 262 1e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 224 - 262 7.5e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 224 - 249 7.3e-06 RING-like zinc finger
zf-rbx1 PF12678 238 - 263 5.7e-07 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31701
rosa_chinensis RchiOBHm_Chr4g0440251
rosa_laevigata RLG00000006194
rosa_multiflora Rmu_sc0001685.1_g000033
rosa_roxburghii Rroxscaffold_1G00006460 Rroxscaffold_5G00381170
rosa_samantha Rh4AG376300 Rh4CG403900 Rh4DG383000
rosa_wichuraiana Rw4G032210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 541
AccB1I GGYRCC 2 cut(s) 541, 796
AccI GTMKAC 1 cut(s) 111
AclWI GGATC 3 cut(s) 176, 703, 783
AfaI GTAC 6 cut(s) 298, 308, 384, 543, 613, 673
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 345, 577
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 2 cut(s) 129, 500
AluI AGCT 2 cut(s) 129, 500
Alw21I GWGCWC 1 cut(s) 502
Alw26I GTCTC 1 cut(s) 754
AlwI GGATC 3 cut(s) 176, 703, 783
AoxI GGCC 1 cut(s) 372
ApeKI GCWGC 1 cut(s) 271
Asp718I GGTACC 1 cut(s) 541
AspLEI GCGC 1 cut(s) 210
AsuC2I CCSGG 1 cut(s) 253
BanI GGYRCC 2 cut(s) 541, 796
BanII GRGCYC 1 cut(s) 502
BauI CACGAG 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 502
BbvI GCAGC 1 cut(s) 258
BccI CCATC 5 cut(s) 284, 475, 484, 532, 747
BcgI CGANNNNNNTGC 2 cut(s) 694, 728
BciT130I CCWGG 1 cut(s) 186
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 754
BfaI CTAG 4 cut(s) 54, 68, 146, 633
BfmI CTRYAG 1 cut(s) 784
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
Bme1390I CCNGG 2 cut(s) 186, 253
BmiI GGNNCC 3 cut(s) 543, 687, 798
BmrFI CCNGG 2 cut(s) 186, 253
BmsI GCATC 2 cut(s) 313, 702
BpiI GAAGAC 1 cut(s) 112
BpuMI CCSGG 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 185, 792
Bsc4I CCNNNNNNNGG 1 cut(s) 281
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 2 cut(s) 185, 792
BseGI GGATG 2 cut(s) 328, 758
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMII CTCAG 3 cut(s) 494, 699, 749
BseRI GAGGAG 2 cut(s) 608, 611
BseXI GCAGC 1 cut(s) 258
BshFI GGCC 1 cut(s) 374
BshNI GGYRCC 2 cut(s) 541, 796
BsiHKAI GWGCWC 1 cut(s) 502
BsiSI CCGG 2 cut(s) 252, 264
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 754
BsnI GGCC 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 502
Bsp1407I TGTACA 1 cut(s) 306
Bsp143I GATC 4 cut(s) 181, 561, 695, 788
BspANI GGCC 1 cut(s) 374
BspCNI CTCAG 3 cut(s) 495, 700, 750
BspHI TCATGA 1 cut(s) 733
BspLI GGNNCC 3 cut(s) 543, 687, 798
BspMAI CTGCAG 1 cut(s) 788
BspPI GGATC 3 cut(s) 176, 703, 783
BspT107I GGYRCC 2 cut(s) 541, 796
BsrGI TGTACA 1 cut(s) 306
BssECI CCNNGG 2 cut(s) 185, 792
BssMI GATC 4 cut(s) 181, 561, 695, 788
BssSI CACGAG 1 cut(s) 17
Bst2BI CACGAG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 676
Bst6I CTCTTC 1 cut(s) 572
BstAPI GCANNNNNTGC 1 cut(s) 435
BstAUI TGTACA 1 cut(s) 306
BstC8I GCNNGC 2 cut(s) 227, 269
BstDEI CTNAG 4 cut(s) 503, 708, 758, 764
BstF5I GGATG 2 cut(s) 328, 758
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 4 cut(s) 184, 564, 698, 791
BstMAI GTCTC 1 cut(s) 754
BstMBI GATC 4 cut(s) 181, 561, 695, 788
BstMWI GCNNNNNNNGC 1 cut(s) 435
BstNI CCWGG 1 cut(s) 186
BstNSI RCATGY 2 cut(s) 229, 728
BstSCI CCNGG 2 cut(s) 184, 251
BstSFI CTRYAG 1 cut(s) 784
BstV1I GCAGC 1 cut(s) 258
BstV2I GAAGAC 1 cut(s) 112
BstX2I RGATCY 2 cut(s) 181, 788
BstXI CCANNNNNNTGG 1 cut(s) 185
BstYI RGATCY 2 cut(s) 181, 788
BsuRI GGCC 1 cut(s) 374
BtsCI GGATG 2 cut(s) 328, 758
BtsI GCAGTG 2 cut(s) 412, 424
BtsIMutI CAGTG 2 cut(s) 412, 424
Cac8I GCNNGC 2 cut(s) 227, 269
CciI TCATGA 1 cut(s) 733
CfoI GCGC 1 cut(s) 210
Csp6I GTAC 6 cut(s) 297, 307, 383, 542, 612, 672
CviAII CATG 3 cut(s) 226, 725, 734
CviJI RGCY 9 cut(s) 129, 237, 243, 374, 485, 500, 518, 688, 757
CviKI_1 RGCY 9 cut(s) 129, 237, 243, 374, 485, 500, 518, 688, 757
CviQI GTAC 6 cut(s) 297, 307, 383, 542, 612, 672
DdeI CTNAG 4 cut(s) 503, 708, 758, 764
DpnI GATC 4 cut(s) 183, 563, 697, 790
DpnII GATC 4 cut(s) 181, 561, 695, 788
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
Ecl136II GAGCTC 1 cut(s) 500
Eco24I GRGCYC 1 cut(s) 502
Eco53kI GAGCTC 1 cut(s) 500
EcoICRI GAGCTC 1 cut(s) 500
EcoRII CCWGG 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 502
FaeI CATG 3 cut(s) 229, 728, 737
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FatI CATG 3 cut(s) 225, 724, 733
FauNDI CATATG 1 cut(s) 700
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 272
FokI GGATG 2 cut(s) 335, 765
FriOI GRGCYC 1 cut(s) 502
Fsp4HI GCNGC 1 cut(s) 272
FspBI CTAG 4 cut(s) 54, 68, 146, 633
GlaI GCGC 1 cut(s) 209
GluI GCNGC 1 cut(s) 272
HaeIII GGCC 1 cut(s) 374
HapII CCGG 2 cut(s) 252, 264
HhaI GCGC 1 cut(s) 210
Hin1II CATG 3 cut(s) 229, 728, 737
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HinfI GANTC 8 cut(s) 13, 76, 191, 285, 409, 421, 509, 554
HpaII CCGG 2 cut(s) 252, 264
Hpy166II GTNNAC 3 cut(s) 112, 665, 779
Hpy188I TCNGA 4 cut(s) 444, 504, 514, 793
Hpy188III TCNNGA 3 cut(s) 17, 565, 734
Hpy8I GTNNAC 3 cut(s) 112, 665, 779
HpyCH4III ACNGT 1 cut(s) 676
HpyCH4IV ACGT 2 cut(s) 248, 667
HpyCH4V TGCA 4 cut(s) 429, 720, 744, 786
HpyF10VI GCNNNNNNNGC 1 cut(s) 435
HpyF3I CTNAG 4 cut(s) 503, 708, 758, 764
HpySE526I ACGT 2 cut(s) 248, 667
Hsp92II CATG 3 cut(s) 229, 728, 737
HspAI GCGC 1 cut(s) 208
KpnI GGTACC 1 cut(s) 545
Kzo9I GATC 4 cut(s) 181, 561, 695, 788
LmnI GCTCC 1 cut(s) 685
Lsp1109I GCAGC 1 cut(s) 258
LweI GCATC 2 cut(s) 313, 702
MaeI CTAG 4 cut(s) 54, 68, 146, 633
MaeII ACGT 2 cut(s) 248, 667
MaeIII GTNAC 2 cut(s) 38, 767
MalI GATC 4 cut(s) 183, 563, 697, 790
MboI GATC 4 cut(s) 181, 561, 695, 788
MboII GAAGA 6 cut(s) 112, 208, 541, 589, 636, 749
MflI RGATCY 2 cut(s) 181, 788
MhlI GDGCHC 1 cut(s) 502
MluCI AATT 3 cut(s) 139, 467, 805
MlyI GAGTC 2 cut(s) 200, 563
MslI CAYNNNNRTG 1 cut(s) 129
MspI CCGG 2 cut(s) 252, 264
MspR9I CCNGG 2 cut(s) 186, 253
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 435
NciI CCSGG 1 cut(s) 253
NdeI CATATG 1 cut(s) 700
NdeII GATC 4 cut(s) 181, 561, 695, 788
NlaIII CATG 3 cut(s) 229, 728, 737
NlaIV GGNNCC 3 cut(s) 543, 687, 798
NmeAIII GCCGAG 1 cut(s) 544
NmuCI GTSAC 2 cut(s) 38, 767
NspI RCATGY 2 cut(s) 229, 728
PaeI GCATGC 1 cut(s) 229
PagI TCATGA 1 cut(s) 733
PfeI GAWTC 6 cut(s) 13, 76, 285, 409, 421, 509
PflFI GACNNNGTC 1 cut(s) 765
PfoI TCCNGGA 1 cut(s) 251
PkrI GCNGC 1 cut(s) 273
PleI GAGTC 2 cut(s) 199, 562
PpsI GAGTC 2 cut(s) 199, 562
Psp124BI GAGCTC 1 cut(s) 502
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 3 cut(s) 543, 687, 798
PstI CTGCAG 1 cut(s) 788
PsuI RGATCY 2 cut(s) 181, 788
PsyI GACNNNGTC 1 cut(s) 765
RsaI GTAC 6 cut(s) 298, 308, 384, 543, 613, 673
RsaNI GTAC 6 cut(s) 297, 307, 383, 542, 612, 672
RseI CAYNNNNRTG 1 cut(s) 129
SacI GAGCTC 1 cut(s) 502
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 4 cut(s) 181, 561, 695, 788
SchI GAGTC 2 cut(s) 200, 563
ScrFI CCNGG 2 cut(s) 186, 253
SduI GDGCHC 1 cut(s) 502
SetI ASST 9 cut(s) 131, 251, 298, 465, 502, 573, 654, 670, 798
SfaNI GCATC 2 cut(s) 313, 702
SfcI CTRYAG 1 cut(s) 784
SmiMI CAYNNNNRTG 1 cut(s) 129
SphI GCATGC 1 cut(s) 229
Sse9I AATT 3 cut(s) 139, 467, 805
SspI AATATT 1 cut(s) 365
SspMI CTAG 4 cut(s) 54, 68, 146, 633
SstI GAGCTC 1 cut(s) 502
StyD4I CCNGG 2 cut(s) 184, 251
TaaI ACNGT 1 cut(s) 676
TaiI ACGT 2 cut(s) 251, 670
TaqI TCGA 3 cut(s) 33, 194, 591
TasI AATT 3 cut(s) 139, 467, 805
TatI WGTACW 3 cut(s) 306, 611, 671
TfiI GAWTC 6 cut(s) 13, 76, 285, 409, 421, 509
TscAI CASTG 2 cut(s) 419, 431
TseFI GTSAC 2 cut(s) 38, 767
TseI GCWGC 1 cut(s) 271
Tsp45I GTSAC 2 cut(s) 38, 767
TspDTI ATGAA 6 cut(s) 68, 291, 357, 542, 722, 750
TspRI CASTG 2 cut(s) 419, 431
Tth111I GACNNNGTC 1 cut(s) 765
XceI RCATGY 2 cut(s) 229, 728
XmiI GTMKAC 1 cut(s) 111
XspI CTAG 4 cut(s) 54, 68, 146, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.