Rh4AG376300

finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0018428
Physical Location & Seq
Forward (+)
68340114 .. 68341285
1172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG376300.1

Sequence Viewer

Length: 801 bp
ATGGAGATAGTGAATCACGAGGAAAATCACTTCGATTGTCACATCAATCCCACTAGAATACCAGTACTAGACCAGCTTCATCGTCAAGGGGAACTTTGGATAGAGTTTGTCTACAAAGTCTTCCACGGCTATGAGAATAATTCACTAGACAATCAAAGAACTCGTATCAGGCAATACCAAGATCCTGGGGAGTCGAAGAAAGAACTGCACCGATATGAGATGAGCATGCTAAAGAGCCACAGCCAAACGTCCGGGATTATGTCCGGCGTGCTGCCCATCTTTGGAATCACAAAAGGTACTTTGTACAATAAAATAGTGGATGCGATAGTCATTTGGGTTTCAAACAGGGGCAGTTCTCAAGAGTCATTGGCCTTATCGGTACATATTATTAGGCAACATACCAAGATTCACTGCAATCGGTGCTTTCGGAGGGATTTGATATTGGAGGTGGAATTGAGGGAGATGGCTTTAATGGAGAGAGCTCTGAGGGAATCGGAAGCCGAGAGAATGAAGAAAATGATGGTACCAGCGAGTGAGTCCGCGATCAAGAACCTTTTGAAGAGGGTAATGGTCGAGGAGGAGGAAAAGGAAAGTACAAGAAAAAGAAGAAAATCTAGTAGTAGTAGTAGTAGTAGTAGTGAGGTGGGTGGTGGTGGGTGTTGTACTGTTTGTTTGGAGCCTCTGGGATCATATGCGACTGAGATGCCTTGCAAACATGCGTTTCATGAAGATTGCATAGTGGGATGGCTGAGACTTAGTCACTATTGTCCACTCTGCAGATCCGAGGTGCCAACTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

266

Amino Acids

30.62

Weight (kDa)

7.63

Isoelectric Point (pI)

62.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 220 - 260 2.2e-10 Ring finger domain
zf-rbx1 PF12678 220 - 260 5.3e-08 RING-H2 zinc finger domain
zf-C3HC4 PF00097 221 - 259 7.3e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 221 - 259 2.7e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 221 - 246 7.2e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31701
rosa_chinensis RchiOBHm_Chr4g0440251
rosa_laevigata RLG00000006194
rosa_multiflora Rmu_sc0001685.1_g000033
rosa_roxburghii Rroxscaffold_1G00006460 Rroxscaffold_5G00381170
rosa_samantha Rh4AG376300 Rh4CG403900 Rh4DG383000
rosa_wichuraiana Rw4G032210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 523
AccB1I GGYRCC 2 cut(s) 523, 787
AccI GTMKAC 1 cut(s) 111
AccII CGCG 1 cut(s) 542
AciI CCGC 1 cut(s) 540
AclWI GGATC 3 cut(s) 176, 694, 774
AfaI GTAC 7 cut(s) 66, 298, 305, 381, 525, 595, 664
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 342, 559
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 2 cut(s) 76, 482
AluI AGCT 2 cut(s) 76, 482
Alw21I GWGCWC 1 cut(s) 484
Alw26I GTCTC 1 cut(s) 745
AlwI GGATC 3 cut(s) 176, 694, 774
AoxI GGCC 1 cut(s) 369
ApeKI GCWGC 1 cut(s) 271
Asp718I GGTACC 1 cut(s) 523
AsuC2I CCSGG 1 cut(s) 253
BanI GGYRCC 2 cut(s) 523, 787
BanII GRGCYC 1 cut(s) 484
BauI CACGAG 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 484
BbvI GCAGC 1 cut(s) 258
BccI CCATC 4 cut(s) 284, 457, 514, 738
BceAI ACGGC 1 cut(s) 142
BcgI CGANNNNNNTGC 2 cut(s) 685, 719
BciT130I CCWGG 1 cut(s) 186
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 745
BfaI CTAG 4 cut(s) 54, 68, 146, 615
BfmI CTRYAG 1 cut(s) 775
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
BmcAI AGTACT 1 cut(s) 66
Bme1390I CCNGG 2 cut(s) 186, 253
BmiI GGNNCC 3 cut(s) 525, 678, 789
BmrFI CCNGG 2 cut(s) 186, 253
BmsI GCATC 2 cut(s) 310, 693
BpiI GAAGAC 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 342
BpuMI CCSGG 1 cut(s) 253
BsaJI CCNNGG 3 cut(s) 124, 185, 783
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 62
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 3 cut(s) 124, 185, 783
BseGI GGATG 2 cut(s) 325, 749
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMII CTCAG 3 cut(s) 476, 690, 740
BseNI ACTGG 1 cut(s) 62
BseRI GAGGAG 2 cut(s) 590, 593
BseXI GCAGC 1 cut(s) 258
BsgI GTGCAG 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 542
BshFI GGCC 1 cut(s) 371
BshNI GGYRCC 2 cut(s) 523, 787
BsiHKAI GWGCWC 1 cut(s) 484
BsiSI CCGG 2 cut(s) 252, 264
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 745
BsnI GGCC 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 484
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 4 cut(s) 181, 543, 686, 779
BspACI CCGC 1 cut(s) 540
BspANI GGCC 1 cut(s) 371
BspCNI CTCAG 3 cut(s) 477, 691, 741
BspFNI CGCG 1 cut(s) 542
BspHI TCATGA 1 cut(s) 724
BspLI GGNNCC 3 cut(s) 525, 678, 789
BspMAI CTGCAG 1 cut(s) 779
BspPI GGATC 3 cut(s) 176, 694, 774
BspT107I GGYRCC 2 cut(s) 523, 787
BsrGI TGTACA 1 cut(s) 303
BsrI ACTGG 1 cut(s) 62
BssECI CCNNGG 3 cut(s) 124, 185, 783
BssMI GATC 4 cut(s) 181, 543, 686, 779
BssSI CACGAG 1 cut(s) 17
Bst2BI CACGAG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 667
Bst6I CTCTTC 1 cut(s) 554
BstAPI GCANNNNNTGC 1 cut(s) 420
BstAUI TGTACA 1 cut(s) 303
BstC8I GCNNGC 2 cut(s) 227, 269
BstDEI CTNAG 4 cut(s) 485, 699, 749, 755
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 2 cut(s) 325, 749
BstFNI CGCG 1 cut(s) 542
BstKTI GATC 4 cut(s) 184, 546, 689, 782
BstMAI GTCTC 1 cut(s) 745
BstMBI GATC 4 cut(s) 181, 543, 686, 779
BstMWI GCNNNNNNNGC 1 cut(s) 420
BstNI CCWGG 1 cut(s) 186
BstNSI RCATGY 2 cut(s) 229, 719
BstSCI CCNGG 2 cut(s) 184, 251
BstSFI CTRYAG 1 cut(s) 775
BstUI CGCG 1 cut(s) 542
BstV1I GCAGC 1 cut(s) 258
BstV2I GAAGAC 1 cut(s) 112
BstX2I RGATCY 2 cut(s) 181, 779
BstXI CCANNNNNNTGG 1 cut(s) 185
BstYI RGATCY 2 cut(s) 181, 779
BsuRI GGCC 1 cut(s) 371
BtgI CCRYGG 1 cut(s) 124
BtsCI GGATG 2 cut(s) 325, 749
BtsI GCAGTG 1 cut(s) 409
BtsIMutI CAGTG 1 cut(s) 409
Cac8I GCNNGC 2 cut(s) 227, 269
CciI TCATGA 1 cut(s) 724
Csp6I GTAC 7 cut(s) 65, 297, 304, 380, 524, 594, 663
CviAII CATG 3 cut(s) 226, 716, 725
CviQI GTAC 7 cut(s) 65, 297, 304, 380, 524, 594, 663
DdeI CTNAG 4 cut(s) 485, 699, 749, 755
DpnI GATC 4 cut(s) 183, 545, 688, 781
DpnII GATC 4 cut(s) 181, 543, 686, 779
Eam1104I CTCTTC 1 cut(s) 554
EarI CTCTTC 1 cut(s) 554
Ecl136II GAGCTC 1 cut(s) 482
Eco24I GRGCYC 1 cut(s) 484
Eco53kI GAGCTC 1 cut(s) 482
EcoICRI GAGCTC 1 cut(s) 482
EcoRII CCWGG 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 484
FaeI CATG 3 cut(s) 229, 719, 728
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FatI CATG 3 cut(s) 225, 715, 724
FauNDI CATATG 1 cut(s) 691
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 272
FokI GGATG 2 cut(s) 332, 756
FriOI GRGCYC 1 cut(s) 484
Fsp4HI GCNGC 1 cut(s) 272
FspBI CTAG 4 cut(s) 54, 68, 146, 615
GluI GCNGC 1 cut(s) 272
HaeIII GGCC 1 cut(s) 371
HapII CCGG 2 cut(s) 252, 264
Hin1II CATG 3 cut(s) 229, 719, 728
HinfI GANTC 7 cut(s) 13, 191, 285, 362, 406, 491, 536
HpaII CCGG 2 cut(s) 252, 264
Hpy166II GTNNAC 2 cut(s) 112, 770
Hpy188I TCNGA 4 cut(s) 429, 486, 496, 784
Hpy188III TCNNGA 4 cut(s) 17, 359, 547, 725
Hpy8I GTNNAC 2 cut(s) 112, 770
HpyCH4III ACNGT 1 cut(s) 667
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 5 cut(s) 208, 414, 711, 735, 777
HpyF10VI GCNNNNNNNGC 1 cut(s) 420
HpyF3I CTNAG 4 cut(s) 485, 699, 749, 755
HpySE526I ACGT 1 cut(s) 248
Hsp92II CATG 3 cut(s) 229, 719, 728
KpnI GGTACC 1 cut(s) 527
Kzo9I GATC 4 cut(s) 181, 543, 686, 779
LmnI GCTCC 1 cut(s) 676
Lsp1109I GCAGC 1 cut(s) 258
LweI GCATC 2 cut(s) 310, 693
MaeI CTAG 4 cut(s) 54, 68, 146, 615
MaeII ACGT 1 cut(s) 248
MaeIII GTNAC 2 cut(s) 38, 758
MalI GATC 4 cut(s) 183, 545, 688, 781
MboI GATC 4 cut(s) 181, 543, 686, 779
MboII GAAGA 6 cut(s) 112, 208, 523, 571, 618, 740
MflI RGATCY 2 cut(s) 181, 779
MhlI GDGCHC 1 cut(s) 484
MluCI AATT 3 cut(s) 139, 452, 796
MlyI GAGTC 3 cut(s) 200, 371, 545
MseI TTAA 1 cut(s) 470
MslI CAYNNNNRTG 2 cut(s) 129, 213
MspI CCGG 2 cut(s) 252, 264
MspR9I CCNGG 2 cut(s) 186, 253
MvaI CCWGG 1 cut(s) 186
MvnI CGCG 1 cut(s) 542
MwoI GCNNNNNNNGC 1 cut(s) 420
NciI CCSGG 1 cut(s) 253
NdeI CATATG 1 cut(s) 691
NdeII GATC 4 cut(s) 181, 543, 686, 779
NlaIII CATG 3 cut(s) 229, 719, 728
NlaIV GGNNCC 3 cut(s) 525, 678, 789
NmeAIII GCCGAG 1 cut(s) 526
NmuCI GTSAC 2 cut(s) 38, 758
NspI RCATGY 2 cut(s) 229, 719
PaeI GCATGC 1 cut(s) 229
PagI TCATGA 1 cut(s) 724
PfeI GAWTC 4 cut(s) 13, 285, 406, 491
PflFI GACNNNGTC 1 cut(s) 756
PfoI TCCNGGA 1 cut(s) 251
PkrI GCNGC 1 cut(s) 273
PleI GAGTC 3 cut(s) 199, 370, 544
PpsI GAGTC 3 cut(s) 199, 370, 544
Psp124BI GAGCTC 1 cut(s) 484
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 3 cut(s) 525, 678, 789
PstI CTGCAG 1 cut(s) 779
PsuI RGATCY 2 cut(s) 181, 779
PsyI GACNNNGTC 1 cut(s) 756
RsaI GTAC 7 cut(s) 66, 298, 305, 381, 525, 595, 664
RsaNI GTAC 7 cut(s) 65, 297, 304, 380, 524, 594, 663
RseI CAYNNNNRTG 2 cut(s) 129, 213
SacI GAGCTC 1 cut(s) 484
SaqAI TTAA 1 cut(s) 470
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 4 cut(s) 181, 543, 686, 779
ScaI AGTACT 1 cut(s) 66
SchI GAGTC 3 cut(s) 200, 371, 545
ScrFI CCNGG 2 cut(s) 186, 253
SduI GDGCHC 1 cut(s) 484
SetI ASST 8 cut(s) 78, 251, 298, 450, 484, 555, 645, 789
SfaNI GCATC 2 cut(s) 310, 693
SfcI CTRYAG 1 cut(s) 775
SmiMI CAYNNNNRTG 2 cut(s) 129, 213
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
SphI GCATGC 1 cut(s) 229
Sse9I AATT 3 cut(s) 139, 452, 796
SsiI CCGC 1 cut(s) 540
SspMI CTAG 4 cut(s) 54, 68, 146, 615
SstI GAGCTC 1 cut(s) 484
StyD4I CCNGG 2 cut(s) 184, 251
TaaI ACNGT 1 cut(s) 667
TaiI ACGT 1 cut(s) 251
TaqI TCGA 3 cut(s) 33, 194, 573
TasI AATT 3 cut(s) 139, 452, 796
TatI WGTACW 4 cut(s) 64, 303, 593, 662
TfiI GAWTC 4 cut(s) 13, 285, 406, 491
Tru1I TTAA 1 cut(s) 470
Tru9I TTAA 1 cut(s) 470
TscAI CASTG 1 cut(s) 416
TseFI GTSAC 2 cut(s) 38, 758
TseI GCWGC 1 cut(s) 271
Tsp45I GTSAC 2 cut(s) 38, 758
TspDTI ATGAA 4 cut(s) 68, 524, 713, 741
TspRI CASTG 1 cut(s) 416
Tth111I GACNNNGTC 1 cut(s) 756
XceI RCATGY 2 cut(s) 229, 719
XmiI GTMKAC 1 cut(s) 111
XspI CTAG 4 cut(s) 54, 68, 146, 615
ZrmI AGTACT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.