Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018193

Physical Location & Seq

Genomic Coordinates Forward (+)

215527 .. 216922

Gene Structure 1396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28192

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGATGGCCACAAAATCTGATGCCACAGCTTCCTCGAGACTGCAACCGAAACCAGCTGGTGCTCAAACGGATGACCTCAGGCAATTGCCTACACACAATATCAAGAATGCATCAAAGGAAGTGGATTCAGCTGTAAATCAGACTAGAGGCTCAGCGGAAAGTTATGTTAATCAAGAAAAGAAGATATTAGAGTATGAAAGTGTCAAGGACAGCTCAGTTTCGGCCAAAGTTAGCGATGGAGCCAACAGTATTGGCAAGAAAAGTGGAAGTGCCAAGAATTTTGTTGAAAATAGCAAGAGCAGCATGTGCAGAGGAAGCACAAGTAGTGATGTTAGTGATGAAAGCACTTGTAGCAGCTTTAGTACCAGCATTAGCAAGCCACACAAAGCAAATGACTTGAGATGGGAAGTTATCCAAGCTGTCCGAGCAAGAGATGGGGTTCTGGGTTTAGGTAATTTCAGATTGCTAAAGAGGTTGGGCTGTGGGGATATTGGGAGTGTCTATTTGTCGAAGTTAAGCGGAACCGAATGTTATTTTGCAATGAAGGTTACGGACAAAGGGGTCTCTAACAAGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

192

Amino Acids

20.51

Weight (kDa)

9.25

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018193)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0000351 RchiOBHm_Chr5g0080871
rosa_multiflora	Rmu_co8300683.1_g000001 Rmu_sc0002119.1_g000001 Rmu_ssc0000385.1_g000013
rosa_rugosa	Rorug07G0031000
rosa_samantha	Rh5AG002800 Rh5BG004000 Rh5CG003100 Rh5DG003000
rosa_wichuraiana	Rw6G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	560
AciI	CCGC	2 cut(s)	155, 519
AcoI	YGGCCR	2 cut(s)	6, 222
AcsI	RAATTY	1 cut(s)	277
AfaI	GTAC	1 cut(s)	364
AgsI	TTSAA	1 cut(s)	287
AluBI	AGCT	6 cut(s)	29, 56, 131, 213, 357, 419
AluI	AGCT	6 cut(s)	29, 56, 131, 213, 357, 419
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	2 cut(s)	31, 568
Ama87I	CYCGRG	1 cut(s)	34
AoxI	GGCC	2 cut(s)	6, 222
ApeKI	GCWGC	2 cut(s)	300, 354
ApoI	RAATTY	1 cut(s)	277
AvaI	CYCGRG	1 cut(s)	34
AxyI	CCTNAGG	1 cut(s)	77
BalI	TGGCCA	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	2 cut(s)	312, 366
BccI	CCATC	3 cut(s)	230, 396, 428
BcoDI	GTCTC	2 cut(s)	31, 568
BfaI	CTAG	1 cut(s)	144
BisI	GCNGC	2 cut(s)	301, 355
BlpI	GCTNAGC	1 cut(s)	151
BlsI	GCNGC	2 cut(s)	302, 356
BmeT110I	CYCGRG	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	241, 523
BmsI	GCATC	2 cut(s)	10, 119
Bpu1102I	GCTNAGC	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	418
BsaI	GGTCTC	1 cut(s)	568
Bse21I	CCTNAGG	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	546
BseGI	GGATG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	3 cut(s)	91, 165, 228
BseXI	GCAGC	2 cut(s)	312, 366
BsgI	GTGCAG	1 cut(s)	328
BshFI	GGCC	2 cut(s)	8, 224
BsiHKAI	GWGCWC	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	34
BsmAI	GTCTC	2 cut(s)	31, 568
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	8, 224
Bso31I	GGTCTC	1 cut(s)	568
BsoBI	CYCGRG	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp1720I	GCTNAGC	1 cut(s)	151
BspACI	CCGC	2 cut(s)	155, 519
BspANI	GGCC	2 cut(s)	8, 224
BspCNI	CTCAG	3 cut(s)	90, 164, 227
BspLI	GGNNCC	2 cut(s)	241, 523
BspTNI	GGTCTC	1 cut(s)	568
BsrDI	GCAATG	1 cut(s)	546
Bst4CI	ACNGT	1 cut(s)	248
BstAPI	GCANNNNNTGC	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	377
BstDEI	CTNAG	3 cut(s)	77, 151, 214
BstF5I	GGATG	1 cut(s)	76
BstMAI	GTCTC	2 cut(s)	31, 568
BstMWI	GCNNNNNNNGC	5 cut(s)	300, 306, 315, 351, 425
BstNSI	RCATGY	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	312, 366
Bsu36I	CCTNAGG	1 cut(s)	77
BsuRI	GGCC	2 cut(s)	8, 224
BtgZI	GCGATG	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	363
CspCI	CAANNNNNGTGG	4 cut(s)	102, 137, 244, 279
CviAII	CATG	1 cut(s)	304
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	3 cut(s)	77, 151, 214
DrdI	GACNNNNNNGTC	1 cut(s)	560
DseDI	GACNNNNNNGTC	1 cut(s)	560
EaeI	YGGCCR	2 cut(s)	6, 222
Eco31I	GGTCTC	1 cut(s)	568
Eco81I	CCTNAGG	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	112
FaeI	CATG	1 cut(s)	307
FaiI	YATR	3 cut(s)	165, 195, 305
FatI	CATG	1 cut(s)	303
Fnu4HI	GCNGC	2 cut(s)	301, 355
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	2 cut(s)	301, 355
FspBI	CTAG	1 cut(s)	144
GluI	GCNGC	2 cut(s)	301, 355
HaeIII	GGCC	2 cut(s)	8, 224
Hin1II	CATG	1 cut(s)	307
HinfI	GANTC	1 cut(s)	125
Hpy188I	TCNGA	4 cut(s)	19, 141, 425, 461
Hpy188III	TCNNGA	3 cut(s)	36, 103, 173
HpyAV	CCTTC	1 cut(s)	538
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4V	TGCA	4 cut(s)	43, 110, 309, 539
HpyF10VI	GCNNNNNNNGC	5 cut(s)	300, 306, 315, 351, 425
HpyF3I	CTNAG	3 cut(s)	77, 151, 214
Hsp92II	CATG	1 cut(s)	307
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	5 cut(s)	42, 64, 66, 379, 428
Lsp1109I	GCAGC	2 cut(s)	312, 366
LweI	GCATC	2 cut(s)	10, 119
MaeI	CTAG	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	547
MboII	GAAGA	1 cut(s)	193
MfeI	CAATTG	1 cut(s)	83
MhlI	GDGCHC	1 cut(s)	64
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	3 cut(s)	83, 277, 454
MluNI	TGGCCA	1 cut(s)	8
MnlI	CCTC	5 cut(s)	43, 86, 140, 305, 465
Mox20I	TGGCCA	1 cut(s)	8
Mph1103I	ATGCAT	1 cut(s)	112
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	2 cut(s)	168, 515
Msp20I	TGGCCA	1 cut(s)	8
MspA1I	CMGCKG	3 cut(s)	56, 131, 155
MunI	CAATTG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	112
MwoI	GCNNNNNNNGC	5 cut(s)	300, 306, 315, 351, 425
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	2 cut(s)	241, 523
NsiI	ATGCAT	1 cut(s)	112
NspI	RCATGY	1 cut(s)	307
PaeR7I	CTCGAG	1 cut(s)	34
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	302, 356
PspN4I	GGNNCC	2 cut(s)	241, 523
PvuII	CAGCTG	2 cut(s)	56, 131
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	168, 515
SatI	GCNGC	2 cut(s)	301, 355
SduI	GDGCHC	1 cut(s)	64
SfaNI	GCATC	2 cut(s)	10, 119
Sfr274I	CTCGAG	1 cut(s)	34
SlaI	CTCGAG	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	34, 397
SmoI	CTYRAG	2 cut(s)	34, 397
Sse9I	AATT	3 cut(s)	83, 277, 454
SsiI	CCGC	2 cut(s)	155, 519
SspMI	CTAG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	248
TaqI	TCGA	2 cut(s)	35, 509
TasI	AATT	3 cut(s)	83, 277, 454
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	2 cut(s)	168, 515
Tru9I	TTAA	2 cut(s)	168, 515
TseI	GCWGC	2 cut(s)	300, 354
TspDTI	ATGAA	3 cut(s)	210, 354, 557
TspGWI	ACGGA	2 cut(s)	83, 566
XapI	RAATTY	1 cut(s)	277
XceI	RCATGY	1 cut(s)	307
XhoI	CTCGAG	1 cut(s)	34
XspI	CTAG	1 cut(s)	144
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.