Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002119.1

Orthogroup ID

OG0018193

Physical Location & Seq

Genomic Coordinates Reverse (-)

1164 .. 2620

Gene Structure 1457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002119.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atggcaggacaaagcattgatatgcagaacaatggtaatctcctaagacaaggctggagacttaagttctttgattgtgcagatgttcaacagaacaatggatattctcagtacaacaatggaaggagcaatgcaggtagcttcaatggttcaaatggatactcagaaaacaataatggtggttactcacagaacatcaatgaaggctactcaacatcaaatggtggtgcatcacgacgcaatgtgggatcttatcaacaatcaagatattcaaactcagaagacaatcatggaaacaataggagcttcaacaagattaatactaatggctcaaccataatttcctctaaactgcaaccaaaagcagctggtgttcaaaggatagaatcagatgatctcaggcaattgcccacacacactatgaaagtaactaaatcggagttgatagctcctgagatgttactgaaatctgtacagaattcatcaaagcatgttgtggtagcagcttctgataataaaaggtcagaaaattccaatgacacaggatctgttgatttgttgattagtgaattgaattcgattgcattgtcacccaactttgagaatgcatcaaaggaaggagattcacctgtcaatcaatctaaaggctcattggaaagttatgttgatcaagaaaagaagatattagagtatgtaagtgtgaaggacagatcagtttcaaccaaagttagtgatggtttcagctctactgtagaaagccaagtccaggctgcttttctcacttctaaaccagtgccagtctccattgccattccaacaagttctcgatcaaacgatgttatttcctttctaatacaaggcactcagccgcttccttgtacttcttctgaaagacttctactgaactgtaggcaggcctctcagcctatggagctatggcaattaccactcattcctcctggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

321

Amino Acids

34.91

Weight (kDa)

6.84

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018193)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0000351 RchiOBHm_Chr5g0080871
rosa_multiflora	Rmu_co8300683.1_g000001 Rmu_sc0002119.1_g000001 Rmu_ssc0000385.1_g000013
rosa_rugosa	Rorug07G0031000
rosa_samantha	Rh5AG002800 Rh5BG004000 Rh5CG003100 Rh5DG003000
rosa_wichuraiana	Rw6G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	125
AciI	CCGC	1 cut(s)	869
AclWI	GGATC	2 cut(s)	256, 553
AcsI	RAATTY	3 cut(s)	478, 529, 574
AfaI	GTAC	3 cut(s)	113, 474, 880
AfiI	CCNNNNNNNGG	1 cut(s)	766
AflII	CTTAAG	1 cut(s)	62
AgsI	TTSAA	8 cut(s)	89, 145, 153, 273, 310, 377, 574, 720
AjnI	CCWGG	2 cut(s)	765, 958
AluBI	AGCT	7 cut(s)	141, 306, 368, 449, 506, 744, 934
AluI	AGCT	7 cut(s)	141, 306, 368, 449, 506, 744, 934
Alw26I	GTCTC	2 cut(s)	52, 805
AlwI	GGATC	2 cut(s)	256, 553
AlwNI	CAGNNNCTG	2 cut(s)	509, 548
AoxI	GGCC	1 cut(s)	915
ApeKI	GCWGC	3 cut(s)	365, 503, 770
ApoI	RAATTY	3 cut(s)	478, 529, 574
AseI	ATTAAT	1 cut(s)	318
Asp700I	GAANNNNTTC	1 cut(s)	894
AsuHPI	GGTGA	2 cut(s)	582, 618
BbsI	GAAGAC	1 cut(s)	288
BbvI	GCAGC	3 cut(s)	377, 515, 757
BccI	CCATC	1 cut(s)	728
BciT130I	CCWGG	2 cut(s)	767, 960
BciVI	GTATCC	1 cut(s)	152
BclI	TGATCA	1 cut(s)	667
BcoDI	GTCTC	2 cut(s)	52, 805
BfmI	CTRYAG	2 cut(s)	750, 907
BfrI	CTTAAG	1 cut(s)	62
BfuAI	ACCTGC	1 cut(s)	125
BfuI	GTATCC	1 cut(s)	152
BisI	GCNGC	4 cut(s)	366, 504, 771, 869
BlsI	GCNGC	4 cut(s)	367, 505, 772, 870
Bme1390I	CCNGG	2 cut(s)	767, 960
BmrFI	CCNGG	2 cut(s)	767, 960
BmsI	GCATC	2 cut(s)	239, 617
BpiI	GAAGAC	1 cut(s)	288
BpmI	CTGGAG	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	766
Bse1I	ACTGG	2 cut(s)	791, 797
Bse3DI	GCAATG	3 cut(s)	136, 247, 804
BseBI	CCWGG	2 cut(s)	767, 960
BseLI	CCNNNNNNNGG	1 cut(s)	766
BseMI	GCAATG	3 cut(s)	136, 247, 804
BseMII	CTCAG	7 cut(s)	122, 177, 291, 412, 444, 878, 935
BseNI	ACTGG	2 cut(s)	791, 797
BseXI	GCAGC	3 cut(s)	377, 515, 757
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	917
BslI	CCNNNNNNNGG	1 cut(s)	766
BsmAI	GTCTC	2 cut(s)	52, 805
BsmI	GAATGC	1 cut(s)	610
BsnI	GGCC	1 cut(s)	917
Bsp1407I	TGTACA	1 cut(s)	472
Bsp143I	GATC	6 cut(s)	248, 394, 545, 667, 710, 827
BspACI	CCGC	1 cut(s)	869
BspANI	GGCC	1 cut(s)	917
BspCNI	CTCAG	7 cut(s)	121, 176, 290, 411, 445, 877, 934
BspMI	ACCTGC	1 cut(s)	125
BspPI	GGATC	2 cut(s)	256, 553
BspTI	CTTAAG	1 cut(s)	62
BsrDI	GCAATG	3 cut(s)	136, 247, 804
BsrGI	TGTACA	1 cut(s)	472
BsrI	ACTGG	2 cut(s)	791, 797
BssMI	GATC	6 cut(s)	248, 394, 545, 667, 710, 827
Bst2UI	CCWGG	2 cut(s)	767, 960
Bst4CI	ACNGT	2 cut(s)	751, 908
BstAFI	CTTAAG	1 cut(s)	62
BstAUI	TGTACA	1 cut(s)	472
BstC8I	GCNNGC	1 cut(s)	915
BstDEI	CTNAG	8 cut(s)	44, 108, 163, 277, 398, 453, 864, 921
BstKTI	GATC	6 cut(s)	251, 397, 548, 670, 713, 830
BstMAI	GTCTC	2 cut(s)	52, 805
BstMBI	GATC	6 cut(s)	248, 394, 545, 667, 710, 827
BstMWI	GCNNNNNNNGC	1 cut(s)	931
BstNI	CCWGG	2 cut(s)	767, 960
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	2 cut(s)	765, 958
BstSFI	CTRYAG	2 cut(s)	750, 907
BstV1I	GCAGC	3 cut(s)	377, 515, 757
BstV2I	GAAGAC	1 cut(s)	288
BstX2I	RGATCY	2 cut(s)	248, 545
BstYI	RGATCY	2 cut(s)	248, 545
BsuI	GTATCC	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	917
BtsIMutI	CAGTG	1 cut(s)	798
BveI	ACCTGC	1 cut(s)	125
Cac8I	GCNNGC	1 cut(s)	915
CaiI	CAGNNNCTG	2 cut(s)	509, 548
CseI	GACGC	1 cut(s)	246
Csp6I	GTAC	3 cut(s)	112, 473, 879
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviAII	CATG	2 cut(s)	290, 491
CviQI	GTAC	3 cut(s)	112, 473, 879
DdeI	CTNAG	8 cut(s)	44, 108, 163, 277, 398, 453, 864, 921
DpnI	GATC	6 cut(s)	250, 396, 547, 669, 712, 829
DpnII	GATC	6 cut(s)	248, 394, 545, 667, 710, 827
Eco147I	AGGCCT	1 cut(s)	917
EcoRI	GAATTC	2 cut(s)	478, 574
EcoRII	CCWGG	2 cut(s)	765, 958
EcoT22I	ATGCAT	1 cut(s)	610
FaeI	CATG	2 cut(s)	293, 494
FaiI	YATR	9 cut(s)	23, 291, 338, 422, 492, 663, 693, 929, 937
FatI	CATG	2 cut(s)	289, 490
FbaI	TGATCA	1 cut(s)	667
Fnu4HI	GCNGC	4 cut(s)	366, 504, 771, 869
Fsp4HI	GCNGC	4 cut(s)	366, 504, 771, 869
GluI	GCNGC	4 cut(s)	366, 504, 771, 869
GsuI	CTGGAG	1 cut(s)	76
HaeIII	GGCC	1 cut(s)	917
HgaI	GACGC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	293, 494
HinfI	GANTC	2 cut(s)	386, 623
HphI	GGTGA	2 cut(s)	582, 618
Hpy188I	TCNGA	7 cut(s)	166, 280, 391, 439, 511, 526, 889
Hpy188III	TCNNGA	5 cut(s)	234, 264, 452, 671, 825
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	4 cut(s)	117, 197, 611, 697
HpyCH4III	ACNGT	2 cut(s)	751, 908
HpyCH4V	TGCA	7 cut(s)	25, 80, 134, 230, 355, 584, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	931
HpyF3I	CTNAG	8 cut(s)	44, 108, 163, 277, 398, 453, 864, 921
Hsp92II	CATG	2 cut(s)	293, 494
Ksp22I	TGATCA	1 cut(s)	667
Kzo9I	GATC	6 cut(s)	248, 394, 545, 667, 710, 827
LmnI	GCTCC	4 cut(s)	126, 303, 454, 931
Lsp1109I	GCAGC	3 cut(s)	377, 515, 757
LweI	GCATC	2 cut(s)	239, 617
MaeIII	GTNAC	4 cut(s)	182, 427, 459, 588
MalI	GATC	6 cut(s)	250, 396, 547, 669, 712, 829
MboI	GATC	6 cut(s)	248, 394, 545, 667, 710, 827
MboII	GAAGA	3 cut(s)	293, 691, 876
MfeI	CAATTG	1 cut(s)	404
MflI	RGATCY	2 cut(s)	248, 545
MluCI	AATT	7 cut(s)	339, 404, 478, 529, 569, 574, 941
MmeI	TCCRAC	1 cut(s)	839
MnlI	CCTC	3 cut(s)	355, 928, 966
Mph1103I	ATGCAT	1 cut(s)	610
MroXI	GAANNNNTTC	1 cut(s)	894
MseI	TTAA	2 cut(s)	63, 318
MslI	CAYNNNNRTG	1 cut(s)	20
MspA1I	CMGCKG	1 cut(s)	368
MspCI	CTTAAG	1 cut(s)	62
MspR9I	CCNGG	2 cut(s)	767, 960
MunI	CAATTG	1 cut(s)	404
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	2 cut(s)	767, 960
MwoI	GCNNNNNNNGC	1 cut(s)	931
NdeII	GATC	6 cut(s)	248, 394, 545, 667, 710, 827
NlaIII	CATG	2 cut(s)	293, 494
NmuCI	GTSAC	1 cut(s)	588
NsiI	ATGCAT	1 cut(s)	610
NspI	RCATGY	1 cut(s)	494
PceI	AGGCCT	1 cut(s)	917
PctI	GAATGC	1 cut(s)	610
PdmI	GAANNNNTTC	1 cut(s)	894
PfeI	GAWTC	2 cut(s)	386, 623
PkrI	GCNGC	4 cut(s)	367, 505, 772, 870
PshBI	ATTAAT	1 cut(s)	318
Psp6I	CCWGG	2 cut(s)	765, 958
PspGI	CCWGG	2 cut(s)	765, 958
PstNI	CAGNNNCTG	2 cut(s)	509, 548
PsuI	RGATCY	2 cut(s)	248, 545
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	3 cut(s)	113, 474, 880
RsaNI	GTAC	3 cut(s)	112, 473, 879
RseI	CAYNNNNRTG	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	63, 318
SatI	GCNGC	4 cut(s)	366, 504, 771, 869
Sau3AI	GATC	6 cut(s)	248, 394, 545, 667, 710, 827
ScrFI	CCNGG	2 cut(s)	767, 960
SfaNI	GCATC	2 cut(s)	239, 617
SfcI	CTRYAG	2 cut(s)	750, 907
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	7 cut(s)	339, 404, 478, 529, 569, 574, 941
SseBI	AGGCCT	1 cut(s)	917
SsiI	CCGC	1 cut(s)	869
StuI	AGGCCT	1 cut(s)	917
StyD4I	CCNGG	2 cut(s)	765, 958
TaaI	ACNGT	2 cut(s)	751, 908
TaqI	TCGA	2 cut(s)	578, 826
TasI	AATT	7 cut(s)	339, 404, 478, 529, 569, 574, 941
TatI	WGTACW	3 cut(s)	111, 472, 878
TauI	GCSGC	1 cut(s)	871
TfiI	GAWTC	2 cut(s)	386, 623
Tru1I	TTAA	2 cut(s)	63, 318
Tru9I	TTAA	2 cut(s)	63, 318
TscAI	CASTG	1 cut(s)	798
TseFI	GTSAC	1 cut(s)	588
TseI	GCWGC	3 cut(s)	365, 503, 770
Tsp45I	GTSAC	1 cut(s)	588
TspDTI	ATGAA	3 cut(s)	216, 437, 471
TspRI	CASTG	1 cut(s)	798
Vha464I	CTTAAG	1 cut(s)	62
VspI	ATTAAT	1 cut(s)	318
XapI	RAATTY	3 cut(s)	478, 529, 574
XceI	RCATGY	1 cut(s)	494
XmnI	GAANNNNTTC	1 cut(s)	894
Zsp2I	ATGCAT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.