Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0018193

Physical Location & Seq

Genomic Coordinates Forward (+)

354446 .. 354724

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG004000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCCACAAAATCTGGTGCCACAGCTTCCTCGAAATTGCAACAAAAACCAGCTGGTGCTCAAACGGATGACCTCAGGCAATTGCCTACACACAATATCAAGGTAACCAAATCAGAGCTGGCTGCTCCTGAGCAATTGCTGAAATCTGTAGAAAATTCATCAAAGCATGTTGCAGTAGCAGCTTCTGATAATAAAAGGCCAGAAAATTCCAATCAAATAGGATCTGCTGATTTGTTGATTACTAAATTGAATTCGATTTCATTATCACCCAACCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

92

Amino Acids

9.7

Weight (kDa)

9.46

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018193)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0000351 RchiOBHm_Chr5g0080871
rosa_multiflora	Rmu_co8300683.1_g000001 Rmu_sc0002119.1_g000001 Rmu_ssc0000385.1_g000013
rosa_rugosa	Rorug07G0031000
rosa_samantha	Rh5AG002800 Rh5BG004000 Rh5CG003100 Rh5DG003000
rosa_wichuraiana	Rw6G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	17
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	154, 205, 250
AgsI	TTSAA	1 cut(s)	250
AluBI	AGCT	4 cut(s)	26, 53, 118, 182
AluI	AGCT	4 cut(s)	26, 53, 118, 182
Alw21I	GWGCWC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	229
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	2 cut(s)	3, 197
ApeKI	GCWGC	2 cut(s)	122, 179
ApoI	RAATTY	3 cut(s)	154, 205, 250
AsuHPI	GGTGA	1 cut(s)	258
AxyI	CCTNAGG	1 cut(s)	74
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	109, 191
BfmI	CTRYAG	1 cut(s)	147
BisI	GCNGC	2 cut(s)	123, 180
BlsI	GCNGC	2 cut(s)	124, 181
BmiI	GGNNCC	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	129
Bse21I	CCTNAGG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	73
BseMII	CTCAG	2 cut(s)	88, 120
BseXI	GCAGC	2 cut(s)	109, 191
BshFI	GGCC	2 cut(s)	5, 199
BshNI	GGYRCC	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	5, 199
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	221
BspANI	GGCC	2 cut(s)	5, 199
BspCNI	CTCAG	2 cut(s)	87, 121
BspLI	GGNNCC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	17
BssMI	GATC	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	2 cut(s)	74, 129
BstEII	GGTNACC	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	221
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	170
BstPI	GGTNACC	1 cut(s)	103
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	109, 191
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
Bsu36I	CCTNAGG	1 cut(s)	74
BsuRI	GGCC	2 cut(s)	5, 199
BtsCI	GGATG	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	120
CaiI	CAGNNNCTG	1 cut(s)	185
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	7 cut(s)	5, 26, 53, 118, 122, 182, 199
CviKI_1	RGCY	7 cut(s)	5, 26, 53, 118, 122, 182, 199
DdeI	CTNAG	2 cut(s)	74, 129
DpnI	GATC	1 cut(s)	223
DpnII	GATC	1 cut(s)	221
EaeI	YGGCCR	1 cut(s)	3
Eco81I	CCTNAGG	1 cut(s)	74
Eco91I	GGTNACC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	250
FaeI	CATG	1 cut(s)	170
FaiI	YATR	1 cut(s)	168
FatI	CATG	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	123, 180
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	2 cut(s)	123, 180
GluI	GCNGC	2 cut(s)	123, 180
HaeIII	GGCC	2 cut(s)	5, 199
Hin1II	CATG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	258
Hpy188I	TCNGA	2 cut(s)	115, 187
Hpy188III	TCNNGA	1 cut(s)	128
HpyCH4V	TGCA	2 cut(s)	40, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	2 cut(s)	74, 129
Hsp92II	CATG	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	221
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	6 cut(s)	39, 61, 63, 104, 141, 213
Lsp1109I	GCAGC	2 cut(s)	109, 191
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	1 cut(s)	223
MboI	GATC	1 cut(s)	221
MfeI	CAATTG	2 cut(s)	80, 134
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	61
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	35, 80, 134, 154, 205, 245, 250
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	2 cut(s)	40, 83
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	53
MunI	CAATTG	2 cut(s)	80, 134
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	1 cut(s)	221
NlaIII	CATG	1 cut(s)	170
NlaIV	GGNNCC	1 cut(s)	19
NspI	RCATGY	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	124, 181
PspEI	GGTNACC	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	19
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	53
SatI	GCNGC	2 cut(s)	123, 180
Sau3AI	GATC	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	7 cut(s)	28, 55, 75, 105, 120, 184, 276
SfcI	CTRYAG	1 cut(s)	147
Sse9I	AATT	7 cut(s)	35, 80, 134, 154, 205, 245, 250
TaqI	TCGA	2 cut(s)	32, 254
TasI	AATT	7 cut(s)	35, 80, 134, 154, 205, 245, 250
TseI	GCWGC	2 cut(s)	122, 179
TspDTI	ATGAA	2 cut(s)	147, 249
TspGWI	ACGGA	1 cut(s)	80
XapI	RAATTY	3 cut(s)	154, 205, 250
XceI	RCATGY	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.