Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8300683.1

Orthogroup ID

OG0018193

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 894

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8300683.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

agcttcctctgttgcttttatagctaacaacaatggtggtgtcatctctcaacaaggtccatctcagaacaattttggttctacagttcaacagaacaatggatattctcagtacaacaatggaaggagcaatgcaggtagcttcaatggttcaaatggatactcagaaaacaataatggtggttactcacagaacatcaatgaaggctactcaacatcaaatggtggtgcatcacgacgcaatgtgggatcttatcaacaatcaagatattcaaactcagaagacaatcatggaaacaataggagcttcaacaagattaatactaatggctcaaccataatttcctctaaactgcaaccaaaagcagctggtgttcaaaggatagaatcagatgatctcaggcaattgcccacacacactatgaaagtaactaaatcggagttgatagctcctgagatgttactgaaatctgtacagaattcatcaaagcatgttgtggtagcagcttctgataataaaaggtcagaaaattccaatgacacaggatctgttgatttgttgattagtgaattgaattcgattgcattgtcacccaactttgagaatgcatcaaaggaaggagattcacctgtcaatcaatctaaaggctcattggaaagttatgttgatcaagaaaagaagatattagagtatgtaagtgtgaaggacagatcagtttcaaccaaagttagtgatggtttcagctctactgtagaaagccaagtccaggctgcttttctcacttctaaaccagtgccagtctccattgccattccaacaagttctcgatcaaacgatgttatttcctttctaatacaaggcactcagccgcttccttgtacttcttctgaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

297

Amino Acids

31.7

Weight (kDa)

6.4

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018193)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0000351 RchiOBHm_Chr5g0080871
rosa_multiflora	Rmu_co8300683.1_g000001 Rmu_sc0002119.1_g000001 Rmu_ssc0000385.1_g000013
rosa_rugosa	Rorug07G0031000
rosa_samantha	Rh5AG002800 Rh5BG004000 Rh5CG003100 Rh5DG003000
rosa_wichuraiana	Rw6G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	126
AciI	CCGC	1 cut(s)	870
AclWI	GGATC	2 cut(s)	257, 554
AcsI	RAATTY	3 cut(s)	479, 530, 575
AfaI	GTAC	3 cut(s)	114, 475, 881
AfiI	CCNNNNNNNGG	1 cut(s)	767
AgsI	TTSAA	8 cut(s)	90, 146, 154, 274, 311, 378, 575, 721
AjnI	CCWGG	1 cut(s)	766
AluBI	AGCT	8 cut(s)	3, 24, 142, 307, 369, 450, 507, 745
AluI	AGCT	8 cut(s)	3, 24, 142, 307, 369, 450, 507, 745
Alw26I	GTCTC	1 cut(s)	806
AlwI	GGATC	2 cut(s)	257, 554
AlwNI	CAGNNNCTG	2 cut(s)	510, 549
ApeKI	GCWGC	3 cut(s)	366, 504, 771
ApoI	RAATTY	3 cut(s)	479, 530, 575
AseI	ATTAAT	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	2 cut(s)	583, 619
AvaII	GGWCC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	289
BbvI	GCAGC	3 cut(s)	378, 516, 758
BccI	CCATC	2 cut(s)	68, 729
BciT130I	CCWGG	1 cut(s)	768
BciVI	GTATCC	1 cut(s)	153
BclI	TGATCA	1 cut(s)	668
BcoDI	GTCTC	1 cut(s)	806
BfmI	CTRYAG	2 cut(s)	82, 751
BfuAI	ACCTGC	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	153
BisI	GCNGC	4 cut(s)	367, 505, 772, 870
BlsI	GCNGC	4 cut(s)	368, 506, 773, 871
Bme1390I	CCNGG	1 cut(s)	768
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	768
BmsI	GCATC	2 cut(s)	240, 618
BpiI	GAAGAC	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	767
Bse1I	ACTGG	2 cut(s)	792, 798
Bse3DI	GCAATG	3 cut(s)	137, 248, 805
BseBI	CCWGG	1 cut(s)	768
BseLI	CCNNNNNNNGG	1 cut(s)	767
BseMI	GCAATG	3 cut(s)	137, 248, 805
BseMII	CTCAG	7 cut(s)	78, 123, 178, 292, 413, 445, 879
BseNI	ACTGG	2 cut(s)	792, 798
BseXI	GCAGC	3 cut(s)	378, 516, 758
BslI	CCNNNNNNNGG	1 cut(s)	767
BsmAI	GTCTC	1 cut(s)	806
BsmI	GAATGC	1 cut(s)	611
Bsp1407I	TGTACA	1 cut(s)	473
Bsp143I	GATC	6 cut(s)	249, 395, 546, 668, 711, 828
BspACI	CCGC	1 cut(s)	870
BspCNI	CTCAG	7 cut(s)	77, 122, 177, 291, 412, 446, 878
BspMI	ACCTGC	1 cut(s)	126
BspPI	GGATC	2 cut(s)	257, 554
BsrDI	GCAATG	3 cut(s)	137, 248, 805
BsrGI	TGTACA	1 cut(s)	473
BsrI	ACTGG	2 cut(s)	792, 798
BssMI	GATC	6 cut(s)	249, 395, 546, 668, 711, 828
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	2 cut(s)	86, 752
BstAUI	TGTACA	1 cut(s)	473
BstDEI	CTNAG	7 cut(s)	64, 109, 164, 278, 399, 454, 865
BstKTI	GATC	6 cut(s)	252, 398, 549, 671, 714, 831
BstMAI	GTCTC	1 cut(s)	806
BstMBI	GATC	6 cut(s)	249, 395, 546, 668, 711, 828
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstNI	CCWGG	1 cut(s)	768
BstNSI	RCATGY	1 cut(s)	495
BstSCI	CCNGG	1 cut(s)	766
BstSFI	CTRYAG	2 cut(s)	82, 751
BstV1I	GCAGC	3 cut(s)	378, 516, 758
BstV2I	GAAGAC	1 cut(s)	289
BstX2I	RGATCY	2 cut(s)	249, 546
BstYI	RGATCY	2 cut(s)	249, 546
BsuI	GTATCC	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	799
BveI	ACCTGC	1 cut(s)	126
CaiI	CAGNNNCTG	2 cut(s)	510, 549
Cfr13I	GGNCC	1 cut(s)	57
CseI	GACGC	1 cut(s)	247
Csp6I	GTAC	3 cut(s)	113, 474, 880
CspCI	CAANNNNNGTGG	4 cut(s)	17, 52, 161, 196
CviAII	CATG	2 cut(s)	291, 492
CviQI	GTAC	3 cut(s)	113, 474, 880
DdeI	CTNAG	7 cut(s)	64, 109, 164, 278, 399, 454, 865
DpnI	GATC	6 cut(s)	251, 397, 548, 670, 713, 830
DpnII	GATC	6 cut(s)	249, 395, 546, 668, 711, 828
Eco47I	GGWCC	1 cut(s)	57
EcoRI	GAATTC	2 cut(s)	479, 575
EcoRII	CCWGG	1 cut(s)	766
EcoT22I	ATGCAT	1 cut(s)	611
FaeI	CATG	2 cut(s)	294, 495
FaiI	YATR	7 cut(s)	21, 292, 339, 423, 493, 664, 694
FatI	CATG	2 cut(s)	290, 491
FbaI	TGATCA	1 cut(s)	668
Fnu4HI	GCNGC	4 cut(s)	367, 505, 772, 870
Fsp4HI	GCNGC	4 cut(s)	367, 505, 772, 870
GluI	GCNGC	4 cut(s)	367, 505, 772, 870
HgaI	GACGC	1 cut(s)	247
Hin1II	CATG	2 cut(s)	294, 495
HinfI	GANTC	2 cut(s)	387, 624
HphI	GGTGA	2 cut(s)	583, 619
Hpy188I	TCNGA	8 cut(s)	67, 167, 281, 392, 440, 512, 527, 890
Hpy188III	TCNNGA	5 cut(s)	235, 265, 453, 672, 826
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	4 cut(s)	118, 198, 612, 698
HpyCH4III	ACNGT	2 cut(s)	86, 752
HpyCH4V	TGCA	5 cut(s)	135, 231, 356, 585, 609
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
HpyF3I	CTNAG	7 cut(s)	64, 109, 164, 278, 399, 454, 865
Hsp92II	CATG	2 cut(s)	294, 495
Ksp22I	TGATCA	1 cut(s)	668
Kzo9I	GATC	6 cut(s)	249, 395, 546, 668, 711, 828
LmnI	GCTCC	3 cut(s)	127, 304, 455
Lsp1109I	GCAGC	3 cut(s)	378, 516, 758
LweI	GCATC	2 cut(s)	240, 618
MaeIII	GTNAC	4 cut(s)	183, 428, 460, 589
MalI	GATC	6 cut(s)	251, 397, 548, 670, 713, 830
MboI	GATC	6 cut(s)	249, 395, 546, 668, 711, 828
MboII	GAAGA	3 cut(s)	294, 692, 877
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	2 cut(s)	249, 546
MluCI	AATT	7 cut(s)	71, 340, 405, 479, 530, 570, 575
MmeI	TCCRAC	1 cut(s)	840
MnlI	CCTC	2 cut(s)	17, 356
Mph1103I	ATGCAT	1 cut(s)	611
MseI	TTAA	1 cut(s)	319
MspA1I	CMGCKG	1 cut(s)	369
MspR9I	CCNGG	1 cut(s)	768
MunI	CAATTG	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	611
MvaI	CCWGG	1 cut(s)	768
MwoI	GCNNNNNNNGC	1 cut(s)	21
NdeII	GATC	6 cut(s)	249, 395, 546, 668, 711, 828
NlaIII	CATG	2 cut(s)	294, 495
NmuCI	GTSAC	1 cut(s)	589
NsiI	ATGCAT	1 cut(s)	611
NspI	RCATGY	1 cut(s)	495
PctI	GAATGC	1 cut(s)	611
PfeI	GAWTC	2 cut(s)	387, 624
PkrI	GCNGC	4 cut(s)	368, 506, 773, 871
PshBI	ATTAAT	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	766
PspPI	GGNCC	1 cut(s)	57
PstNI	CAGNNNCTG	2 cut(s)	510, 549
PsuI	RGATCY	2 cut(s)	249, 546
PvuII	CAGCTG	1 cut(s)	369
RsaI	GTAC	3 cut(s)	114, 475, 881
RsaNI	GTAC	3 cut(s)	113, 474, 880
SaqAI	TTAA	1 cut(s)	319
SatI	GCNGC	4 cut(s)	367, 505, 772, 870
Sau3AI	GATC	6 cut(s)	249, 395, 546, 668, 711, 828
Sau96I	GGNCC	1 cut(s)	57
ScrFI	CCNGG	1 cut(s)	768
SfaNI	GCATC	2 cut(s)	240, 618
SfcI	CTRYAG	2 cut(s)	82, 751
SinI	GGWCC	1 cut(s)	57
Sse9I	AATT	7 cut(s)	71, 340, 405, 479, 530, 570, 575
SsiI	CCGC	1 cut(s)	870
StyD4I	CCNGG	1 cut(s)	766
TaaI	ACNGT	2 cut(s)	86, 752
TaqI	TCGA	2 cut(s)	579, 827
TasI	AATT	7 cut(s)	71, 340, 405, 479, 530, 570, 575
TatI	WGTACW	3 cut(s)	112, 473, 879
TauI	GCSGC	1 cut(s)	872
TfiI	GAWTC	2 cut(s)	387, 624
Tru1I	TTAA	1 cut(s)	319
Tru9I	TTAA	1 cut(s)	319
TscAI	CASTG	1 cut(s)	799
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	3 cut(s)	366, 504, 771
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	3 cut(s)	217, 438, 472
TspRI	CASTG	1 cut(s)	799
VpaK11BI	GGWCC	1 cut(s)	57
VspI	ATTAAT	1 cut(s)	319
XapI	RAATTY	3 cut(s)	479, 530, 575
XceI	RCATGY	1 cut(s)	495
Zsp2I	ATGCAT	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.