Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0018193

Physical Location & Seq

Genomic Coordinates Forward (+)

227829 .. 228584

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG003100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGATGGCCACAAAATCTGATGCCACAGCTTCCTCGAGACTGCAACCGAAACCAGCTGGTGCTCAAACGGATGAGCTCAGGCAATTGCCTACACACAATATCAAGGTAACCAAATCAGAGCTGGTTGCTCCTGAGCAATTGCTGAAATCTGTACAAAATTCATCAAAGCATGTTGCAGTAGCAGCTTCTGATAATAAAAGGCTAGAAAATTCCAATCAAACAAGATCTGCTGATTTGTTGATTACTAAATTGAATTCGATTTCATTGTCACCCAACCTTCAGAATGCATCAAAGGAAGTGGATTCAGCTGTAAATCAGACTAGAGGCTCAGCGGAAAGTTATGTTAATCAAGAAAAGAAGATATTAGAGTATGAAAGTGTCAAGGACAGCTCAGTTTTGGCCAAAGTTAGCGATGGAGCCAACAGTATTGGCAAGAAAAGTGGAAGTGCCAAGAAATTTGTTGAAAATAGTAAGAGCAGCATGTGCAGAGGAAGCACAAGTAGTGATGTTAGTGATGAAAGCACTTGTAGCAGCTTTAGTACAAGCATTAGCAAGCCACACAAAGCAAATGACTTGAGATGGGAAGTTATCCAAGCTGTCCGAGCAAGAGATGGGGTTCTAGGTTTAGGTAATTTCAGATTGCTAAAGAGGTTGGGCTGTGGGGATATTGGGAGTGTCTATCTGTCGAAGTTAAGCGGAACCGAATGTTATTTTGCAATGAAGGTTACAGACAAAGGGGTCTCTAGCAAGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

251

Amino Acids

26.91

Weight (kDa)

9.42

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018193)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0000351 RchiOBHm_Chr5g0080871
rosa_multiflora	Rmu_co8300683.1_g000001 Rmu_sc0002119.1_g000001 Rmu_ssc0000385.1_g000013
rosa_rugosa	Rorug07G0031000
rosa_samantha	Rh5AG002800 Rh5BG004000 Rh5CG003100 Rh5DG003000
rosa_wichuraiana	Rw6G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	737
AciI	CCGC	2 cut(s)	332, 696
AcoI	YGGCCR	2 cut(s)	6, 399
AcsI	RAATTY	4 cut(s)	157, 208, 253, 455
AcuI	CTGAAG	1 cut(s)	263
AfaI	GTAC	2 cut(s)	153, 541
AgsI	TTSAA	2 cut(s)	253, 464
AluBI	AGCT	9 cut(s)	29, 56, 76, 121, 185, 308, 390, 534, 596
AluI	AGCT	9 cut(s)	29, 56, 76, 121, 185, 308, 390, 534, 596
Alw21I	GWGCWC	2 cut(s)	64, 78
Alw26I	GTCTC	2 cut(s)	31, 745
AlwNI	CAGNNNCTG	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	34
AoxI	GGCC	2 cut(s)	6, 399
ApeKI	GCWGC	3 cut(s)	182, 477, 531
ApoI	RAATTY	4 cut(s)	157, 208, 253, 455
AsuHPI	GGTGA	1 cut(s)	261
AvaI	CYCGRG	1 cut(s)	34
BalI	TGGCCA	2 cut(s)	8, 401
BanII	GRGCYC	1 cut(s)	78
Bbv12I	GWGCWC	2 cut(s)	64, 78
BbvI	GCAGC	3 cut(s)	194, 489, 543
BccI	CCATC	3 cut(s)	407, 573, 605
BcoDI	GTCTC	2 cut(s)	31, 745
BfaI	CTAG	4 cut(s)	203, 321, 620, 744
BglII	AGATCT	1 cut(s)	224
BisI	GCNGC	3 cut(s)	183, 478, 532
BlpI	GCTNAGC	1 cut(s)	328
BlsI	GCNGC	3 cut(s)	184, 479, 533
BmeT110I	CYCGRG	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	418, 700
BmsI	GCATC	2 cut(s)	10, 296
Bpu10I	CCTNAGC	2 cut(s)	77, 132
Bpu1102I	GCTNAGC	1 cut(s)	328
BpuEI	CTTGAG	1 cut(s)	595
BsaI	GGTCTC	1 cut(s)	745
Bse3DI	GCAATG	1 cut(s)	723
BseGI	GGATG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	723
BseMII	CTCAG	4 cut(s)	91, 123, 342, 405
BseXI	GCAGC	3 cut(s)	194, 489, 543
BsgI	GTGCAG	1 cut(s)	505
BshFI	GGCC	2 cut(s)	8, 401
BsiHKAI	GWGCWC	2 cut(s)	64, 78
BsiHKCI	CYCGRG	1 cut(s)	34
BsmAI	GTCTC	2 cut(s)	31, 745
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	2 cut(s)	8, 401
Bso31I	GGTCTC	1 cut(s)	745
BsoBI	CYCGRG	1 cut(s)	34
Bsp1286I	GDGCHC	2 cut(s)	64, 78
Bsp1407I	TGTACA	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	224
Bsp1720I	GCTNAGC	1 cut(s)	328
BspACI	CCGC	2 cut(s)	332, 696
BspANI	GGCC	2 cut(s)	8, 401
BspCNI	CTCAG	4 cut(s)	90, 124, 341, 404
BspLI	GGNNCC	2 cut(s)	418, 700
BspTNI	GGTCTC	1 cut(s)	745
BsrDI	GCAATG	1 cut(s)	723
BsrGI	TGTACA	1 cut(s)	151
BssMI	GATC	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	425
BstAPI	GCANNNNNTGC	1 cut(s)	483
BstAUI	TGTACA	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	554
BstDEI	CTNAG	4 cut(s)	77, 132, 328, 391
BstEII	GGTNACC	1 cut(s)	106
BstF5I	GGATG	1 cut(s)	76
BstKTI	GATC	1 cut(s)	227
BstMAI	GTCTC	2 cut(s)	31, 745
BstMBI	GATC	1 cut(s)	224
BstMWI	GCNNNNNNNGC	5 cut(s)	182, 483, 492, 528, 602
BstNSI	RCATGY	2 cut(s)	173, 484
BstPI	GGTNACC	1 cut(s)	106
BstV1I	GCAGC	3 cut(s)	194, 489, 543
BstX2I	RGATCY	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	8, 401
BtgZI	GCGATG	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	554
CaiI	CAGNNNCTG	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	152, 540
CspCI	CAANNNNNGTGG	4 cut(s)	279, 314, 421, 456
CviAII	CATG	2 cut(s)	170, 481
CviQI	GTAC	2 cut(s)	152, 540
DdeI	CTNAG	4 cut(s)	77, 132, 328, 391
DpnI	GATC	1 cut(s)	226
DpnII	GATC	1 cut(s)	224
DrdI	GACNNNNNNGTC	1 cut(s)	737
DseDI	GACNNNNNNGTC	1 cut(s)	737
EaeI	YGGCCR	2 cut(s)	6, 399
Ecl136II	GAGCTC	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	745
Eco53kI	GAGCTC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	263
Eco88I	CYCGRG	1 cut(s)	34
Eco91I	GGTNACC	1 cut(s)	106
EcoICRI	GAGCTC	1 cut(s)	76
EcoO65I	GGTNACC	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	253
EcoT22I	ATGCAT	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	78
FaeI	CATG	2 cut(s)	173, 484
FaiI	YATR	4 cut(s)	171, 342, 372, 482
FatI	CATG	2 cut(s)	169, 480
Fnu4HI	GCNGC	3 cut(s)	183, 478, 532
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	3 cut(s)	183, 478, 532
FspBI	CTAG	4 cut(s)	203, 321, 620, 744
GluI	GCNGC	3 cut(s)	183, 478, 532
HaeIII	GGCC	2 cut(s)	8, 401
Hin1II	CATG	2 cut(s)	173, 484
HinfI	GANTC	1 cut(s)	302
HphI	GGTGA	1 cut(s)	261
Hpy188I	TCNGA	7 cut(s)	19, 118, 190, 282, 318, 602, 638
Hpy188III	TCNNGA	3 cut(s)	36, 131, 350
HpyAV	CCTTC	2 cut(s)	287, 715
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4V	TGCA	5 cut(s)	43, 176, 287, 486, 716
HpyF10VI	GCNNNNNNNGC	5 cut(s)	182, 483, 492, 528, 602
HpyF3I	CTNAG	4 cut(s)	77, 132, 328, 391
Hsp92II	CATG	2 cut(s)	173, 484
Kzo9I	GATC	1 cut(s)	224
LmnI	GCTCC	2 cut(s)	133, 416
LpnPI	CCDG	5 cut(s)	42, 64, 66, 107, 144
Lsp1109I	GCAGC	3 cut(s)	194, 489, 543
LweI	GCATC	2 cut(s)	10, 296
MaeI	CTAG	4 cut(s)	203, 321, 620, 744
MaeIII	GTNAC	3 cut(s)	106, 267, 724
MalI	GATC	1 cut(s)	226
MboI	GATC	1 cut(s)	224
MboII	GAAGA	1 cut(s)	370
MfeI	CAATTG	2 cut(s)	83, 137
MflI	RGATCY	1 cut(s)	224
MhlI	GDGCHC	2 cut(s)	64, 78
MlsI	TGGCCA	2 cut(s)	8, 401
MluCI	AATT	8 cut(s)	83, 137, 157, 208, 248, 253, 455, 631
MluNI	TGGCCA	2 cut(s)	8, 401
MnlI	CCTC	4 cut(s)	43, 317, 482, 642
Mox20I	TGGCCA	2 cut(s)	8, 401
Mph1103I	ATGCAT	1 cut(s)	289
MscI	TGGCCA	2 cut(s)	8, 401
MseI	TTAA	2 cut(s)	345, 692
Msp20I	TGGCCA	2 cut(s)	8, 401
MspA1I	CMGCKG	3 cut(s)	56, 308, 332
MunI	CAATTG	2 cut(s)	83, 137
Mva1269I	GAATGC	1 cut(s)	289
MwoI	GCNNNNNNNGC	5 cut(s)	182, 483, 492, 528, 602
NdeII	GATC	1 cut(s)	224
NlaIII	CATG	2 cut(s)	173, 484
NlaIV	GGNNCC	2 cut(s)	418, 700
NmuCI	GTSAC	1 cut(s)	267
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	2 cut(s)	173, 484
PaeR7I	CTCGAG	1 cut(s)	34
PctI	GAATGC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	3 cut(s)	184, 479, 533
Psp124BI	GAGCTC	1 cut(s)	78
PspEI	GGTNACC	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	418, 700
PstNI	CAGNNNCTG	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	224
PvuII	CAGCTG	2 cut(s)	56, 308
RsaI	GTAC	2 cut(s)	153, 541
RsaNI	GTAC	2 cut(s)	152, 540
SacI	GAGCTC	1 cut(s)	78
SaqAI	TTAA	2 cut(s)	345, 692
SatI	GCNGC	3 cut(s)	183, 478, 532
Sau3AI	GATC	1 cut(s)	224
SduI	GDGCHC	2 cut(s)	64, 78
SfaNI	GCATC	2 cut(s)	10, 296
Sfr274I	CTCGAG	1 cut(s)	34
SlaI	CTCGAG	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	34, 574
SmoI	CTYRAG	2 cut(s)	34, 574
Sse9I	AATT	8 cut(s)	83, 137, 157, 208, 248, 253, 455, 631
SsiI	CCGC	2 cut(s)	332, 696
SspMI	CTAG	4 cut(s)	203, 321, 620, 744
SstI	GAGCTC	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	425
TaqI	TCGA	3 cut(s)	35, 257, 686
TasI	AATT	8 cut(s)	83, 137, 157, 208, 248, 253, 455, 631
TatI	WGTACW	2 cut(s)	151, 539
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	2 cut(s)	345, 692
Tru9I	TTAA	2 cut(s)	345, 692
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	3 cut(s)	182, 477, 531
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	5 cut(s)	150, 252, 387, 531, 734
TspGWI	ACGGA	1 cut(s)	83
XapI	RAATTY	4 cut(s)	157, 208, 253, 455
XceI	RCATGY	2 cut(s)	173, 484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XhoI	CTCGAG	1 cut(s)	34
XspI	CTAG	4 cut(s)	203, 321, 620, 744
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.