Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0018193

Physical Location & Seq

Genomic Coordinates Forward (+)

236433 .. 237011

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG003000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCCACAAAATCTGGTGCCACAGCTTCCTCGAGACTGCAACCGAAACTAGCTGGTGCTCAAACGGATGACCTGAGGCAATTGCCTACACACAATATCAAGGTAACCAAATCAGAGCTGGCTGCTCCTGAGCAATTGCTGAAATCTGTACAAAATTCATCAAAGCATGTTGCAGTAGCAGCTTCTGATAATAAAAGGCCAGAAAATTCCAATCAAACAGGATCTGCTGATTTGTTGATTACTAAATTGAATTCGATTTCATTGTCACCCAACCTTGAGAATGCATCAAAGGAAGTGGATTCAGCTGTAAATCAGACTAGAGGCCCAGCGGAAAGTTATGTTGATCAAGAAATGAAGATATCAGAGTATGAAAGTGTCAAGGACAGCTCAATTTCGGCCAAAGTTAGCGATGGAGCCAGCAGTATTTCCAAGACAAGTGGAAGTGCCAAGAATTTTGTTGAAAATAGCAAGAGCAGCATGTGTAGAGGAAGCACAAGTAGTGATGTCAGTGATGAGAGCACTTGTAGCAGCTTTAGTACTAGCATCAGCAAGCCACACAAAGCAAATGACTTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

192

Amino Acids

20.26

Weight (kDa)

7.75

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018193)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0000351 RchiOBHm_Chr5g0080871
rosa_multiflora	Rmu_co8300683.1_g000001 Rmu_sc0002119.1_g000001 Rmu_ssc0000385.1_g000013
rosa_rugosa	Rorug07G0031000
rosa_samantha	Rh5AG002800 Rh5BG004000 Rh5CG003100 Rh5DG003000
rosa_wichuraiana	Rw6G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	17
AciI	CCGC	1 cut(s)	329
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	2 cut(s)	3, 396
AcsI	RAATTY	4 cut(s)	154, 205, 250, 451
AfaI	GTAC	2 cut(s)	150, 538
AgsI	TTSAA	2 cut(s)	250, 461
AluBI	AGCT	7 cut(s)	26, 53, 118, 182, 305, 387, 531
AluI	AGCT	7 cut(s)	26, 53, 118, 182, 305, 387, 531
Alw21I	GWGCWC	2 cut(s)	61, 521
Alw26I	GTCTC	1 cut(s)	28
AlwI	GGATC	1 cut(s)	229
AlwNI	CAGNNNCTG	2 cut(s)	185, 224
Ama87I	CYCGRG	1 cut(s)	31
AoxI	GGCC	4 cut(s)	3, 197, 322, 396
ApeKI	GCWGC	4 cut(s)	122, 179, 474, 528
ApoI	RAATTY	4 cut(s)	154, 205, 250, 451
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	258
AvaI	CYCGRG	1 cut(s)	31
AxyI	CCTNAGG	1 cut(s)	74
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	17
Bbv12I	GWGCWC	2 cut(s)	61, 521
BbvI	GCAGC	4 cut(s)	109, 191, 486, 540
BccI	CCATC	1 cut(s)	404
BclI	TGATCA	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	3 cut(s)	50, 318, 540
BisI	GCNGC	4 cut(s)	123, 180, 475, 529
BlsI	GCNGC	4 cut(s)	124, 181, 476, 530
BmcAI	AGTACT	1 cut(s)	538
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	2 cut(s)	19, 415
BmsI	GCATC	2 cut(s)	293, 552
Bpu10I	CCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	296
Bse21I	CCTNAGG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	73
BseMII	CTCAG	2 cut(s)	65, 120
BseXI	GCAGC	4 cut(s)	109, 191, 486, 540
BseYI	CCCAGC	1 cut(s)	325
BshFI	GGCC	4 cut(s)	5, 199, 324, 398
BshNI	GGYRCC	1 cut(s)	17
BsiHKAI	GWGCWC	2 cut(s)	61, 521
BsiHKCI	CYCGRG	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	28
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	4 cut(s)	5, 199, 324, 398
BsoBI	CYCGRG	1 cut(s)	31
Bsp1286I	GDGCHC	2 cut(s)	61, 521
Bsp1407I	TGTACA	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	221, 343
BspACI	CCGC	1 cut(s)	329
BspANI	GGCC	4 cut(s)	5, 199, 324, 398
BspCNI	CTCAG	2 cut(s)	66, 121
BspLI	GGNNCC	2 cut(s)	19, 415
BspPI	GGATC	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	17
BsrGI	TGTACA	1 cut(s)	148
BssMI	GATC	2 cut(s)	221, 343
BstAUI	TGTACA	1 cut(s)	148
BstC8I	GCNNGC	3 cut(s)	120, 418, 551
BstDEI	CTNAG	2 cut(s)	74, 129
BstEII	GGTNACC	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	2 cut(s)	224, 346
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	2 cut(s)	221, 343
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 474, 525
BstNSI	RCATGY	2 cut(s)	170, 481
BstPI	GGTNACC	1 cut(s)	103
BstV1I	GCAGC	4 cut(s)	109, 191, 486, 540
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
Bsu36I	CCTNAGG	1 cut(s)	74
BsuRI	GGCC	4 cut(s)	5, 199, 324, 398
BtgZI	GCGATG	1 cut(s)	423
BtsCI	GGATG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	3 cut(s)	120, 418, 551
CaiI	CAGNNNCTG	2 cut(s)	185, 224
Cfr13I	GGNCC	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	149, 537
CspCI	CAANNNNNGTGG	4 cut(s)	276, 311, 418, 453
CviAII	CATG	2 cut(s)	167, 478
CviQI	GTAC	2 cut(s)	149, 537
DdeI	CTNAG	2 cut(s)	74, 129
DpnI	GATC	2 cut(s)	223, 345
DpnII	GATC	2 cut(s)	221, 343
EaeI	YGGCCR	2 cut(s)	3, 396
Eco32I	GATATC	1 cut(s)	360
Eco81I	CCTNAGG	1 cut(s)	74
Eco88I	CYCGRG	1 cut(s)	31
Eco91I	GGTNACC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	250
EcoRV	GATATC	1 cut(s)	360
EcoT22I	ATGCAT	1 cut(s)	286
FaeI	CATG	2 cut(s)	170, 481
FaiI	YATR	4 cut(s)	168, 339, 369, 479
FatI	CATG	2 cut(s)	166, 477
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	4 cut(s)	123, 180, 475, 529
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	4 cut(s)	123, 180, 475, 529
FspBI	CTAG	3 cut(s)	50, 318, 540
GluI	GCNGC	4 cut(s)	123, 180, 475, 529
GsaI	CCCAGC	1 cut(s)	329
HaeIII	GGCC	4 cut(s)	5, 199, 324, 398
Hin1II	CATG	2 cut(s)	170, 481
HinfI	GANTC	1 cut(s)	299
HphI	GGTGA	1 cut(s)	258
Hpy188I	TCNGA	4 cut(s)	115, 187, 315, 364
Hpy188III	TCNNGA	3 cut(s)	33, 128, 347
HpyCH4V	TGCA	3 cut(s)	40, 173, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 474, 525
HpyF3I	CTNAG	2 cut(s)	74, 129
Hsp92II	CATG	2 cut(s)	170, 481
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	2 cut(s)	221, 343
LmnI	GCTCC	2 cut(s)	130, 413
LpnPI	CCDG	8 cut(s)	39, 86, 104, 141, 204, 213, 339, 430
Lsp1109I	GCAGC	4 cut(s)	109, 191, 486, 540
LweI	GCATC	2 cut(s)	293, 552
MaeI	CTAG	3 cut(s)	50, 318, 540
MaeIII	GTNAC	2 cut(s)	103, 264
MalI	GATC	2 cut(s)	223, 345
MboI	GATC	2 cut(s)	221, 343
MboII	GAAGA	1 cut(s)	367
MfeI	CAATTG	2 cut(s)	80, 134
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	2 cut(s)	61, 521
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	80, 134, 154, 205, 245, 250, 390, 451
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	40, 69, 314, 479
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	286
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	305, 329
MunI	CAATTG	2 cut(s)	80, 134
Mva1269I	GAATGC	1 cut(s)	286
MwoI	GCNNNNNNNGC	3 cut(s)	179, 474, 525
NdeII	GATC	2 cut(s)	221, 343
NlaIII	CATG	2 cut(s)	170, 481
NlaIV	GGNNCC	2 cut(s)	19, 415
NmuCI	GTSAC	1 cut(s)	264
NsiI	ATGCAT	1 cut(s)	286
NspI	RCATGY	2 cut(s)	170, 481
PaeR7I	CTCGAG	1 cut(s)	31
PctI	GAATGC	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	4 cut(s)	124, 181, 476, 530
PspEI	GGTNACC	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	19, 415
PspPI	GGNCC	1 cut(s)	323
PstNI	CAGNNNCTG	2 cut(s)	185, 224
PsuI	RGATCY	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	2 cut(s)	150, 538
RsaNI	GTAC	2 cut(s)	149, 537
SatI	GCNGC	4 cut(s)	123, 180, 475, 529
Sau3AI	GATC	2 cut(s)	221, 343
Sau96I	GGNCC	1 cut(s)	323
ScaI	AGTACT	1 cut(s)	538
SduI	GDGCHC	2 cut(s)	61, 521
SfaNI	GCATC	2 cut(s)	293, 552
Sfr274I	CTCGAG	1 cut(s)	31
SlaI	CTCGAG	1 cut(s)	31
SmlI	CTYRAG	3 cut(s)	31, 275, 571
SmoI	CTYRAG	3 cut(s)	31, 275, 571
Sse9I	AATT	8 cut(s)	80, 134, 154, 205, 245, 250, 390, 451
SsiI	CCGC	1 cut(s)	329
SspMI	CTAG	3 cut(s)	50, 318, 540
TaqI	TCGA	2 cut(s)	32, 254
TasI	AATT	8 cut(s)	80, 134, 154, 205, 245, 250, 390, 451
TatI	WGTACW	2 cut(s)	148, 536
TfiI	GAWTC	1 cut(s)	299
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	264
TseI	GCWGC	4 cut(s)	122, 179, 474, 528
Tsp45I	GTSAC	1 cut(s)	264
TspDTI	ATGAA	4 cut(s)	147, 249, 368, 384
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	514
XapI	RAATTY	4 cut(s)	154, 205, 250, 451
XceI	RCATGY	2 cut(s)	170, 481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XhoI	CTCGAG	1 cut(s)	31
XspI	CTAG	3 cut(s)	50, 318, 540
ZrmI	AGTACT	1 cut(s)	538
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.