Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000385.1

Orthogroup ID

OG0018193

Physical Location & Seq

Genomic Coordinates Forward (+)

47248 .. 49738

Gene Structure 2491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000385.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

atgatggccacaaaatctgatgccactgcttcctcgagactgcaaccgaaaccaactggtgctcaaaaggatgacctcaggcaattgcctacacacaatatcaaggtaaccaaattagatctggttgctcctgagcaattgctgaaatatgtacaaaattcatcaaagcatgttgcaatagcagcttctgataataaaaggccagaaaattccaatcaaataggatctgctgatttgttgattactaaattgaattcgatttcattgtcacccaaccttcagaatgcatcaaaggaagtggattcagctgtaaatcagactagaggctcagcggaaagctatattgatcaagaaaagaagatatcagagtatgaaagtgtcaaggacagctcagtttctgccaaagttagcgatggagccaacagtattgccaaaacaagtggaagtgccaagaattttgaagctatccaagctgtccgagcaagagatggggttctgggtttaggtcatttcagatttctaaagaggttgggctgtggagatattgggagtgtctatctgtcggagttaagcggaaccaaatgttattttgcaatgaaggttatggacaaaggattctatgttgcagaggtcctgttatctctggaatacctccacatgcttgggattgtctatcatgaccttaagccagaaaatgtcctagtgagggaagatggacatataatgctctctgattttgacctctcactccgttgtgcttttagtccaactcttgtcaagacctcttcaatggagtttgagtccttgcgtaaaaaccttgtttattgtgttcaaccagcttgcattgagccaccttcctatatccaaccatcctgtgtggctcctacaacgtgcttctcaacgcgtctattttctagcaagtccaaaaaggataaaaaacctaaaaacgaaactggtaaccaagtaagaccattacctgagctcatggcagaaccaactgatgcccagtctatgtcatttgttggtactcatgagtatttggtacctgagattattaagggtgaaggtcatggaagtgttgttgattggtggacttttggaatctttttgtatgagctattgtttggtaagactcctttcaagggttctgggaatagagcaacattgttcaatgttgtgggtcagcccttgcagtttcgagaatcactagttgtgagtttttccgcgagagacctcatcaggggattgcttgtcaaggaaccgcataacagcttggcatacaaacgaggggcaacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

432

Amino Acids

47.53

Weight (kDa)

8.75

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018193)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0000351 RchiOBHm_Chr5g0080871
rosa_multiflora	Rmu_co8300683.1_g000001 Rmu_sc0002119.1_g000001 Rmu_ssc0000385.1_g000013
rosa_rugosa	Rorug07G0031000
rosa_samantha	Rh5AG002800 Rh5BG004000 Rh5CG003100 Rh5DG003000
rosa_wichuraiana	Rw6G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1042
AccB1I	GGYRCC	1 cut(s)	1042
AccII	CGCG	2 cut(s)	904, 1226
AciI	CCGC	4 cut(s)	332, 573, 1224, 1262
AclWI	GGATC	1 cut(s)	232
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	4 cut(s)	157, 208, 253, 454
AcuI	CTGAAG	1 cut(s)	263
AfaI	GTAC	3 cut(s)	153, 1027, 1044
AfiI	CCNNNNNNNGG	3 cut(s)	706, 1142, 1240
AflII	CTTAAG	1 cut(s)	683
AflIII	ACRYGT	1 cut(s)	902
AgsI	TTSAA	6 cut(s)	253, 461, 789, 833, 1141, 1171
AhlI	ACTAGT	1 cut(s)	1207
Alw21I	GWGCWC	2 cut(s)	64, 984
Alw26I	GTCTC	2 cut(s)	31, 1224
AlwI	GGATC	1 cut(s)	232
AlwNI	CAGNNNCTG	2 cut(s)	188, 398
Ama87I	CYCGRG	1 cut(s)	34
AoxI	GGCC	2 cut(s)	6, 200
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	4 cut(s)	157, 208, 253, 454
Asp718I	GGTACC	1 cut(s)	1042
AspS9I	GGNCC	1 cut(s)	631
AsuHPI	GGTGA	2 cut(s)	261, 1073
AvaI	CYCGRG	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	631
AxyI	CCTNAGG	1 cut(s)	77
BalI	TGGCCA	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	1042
BanII	GRGCYC	1 cut(s)	984
Bbv12I	GWGCWC	2 cut(s)	64, 984
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	4 cut(s)	407, 482, 707, 877
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	31, 1224
BcuI	ACTAGT	1 cut(s)	1207
BfaI	CTAG	4 cut(s)	321, 701, 915, 1208
BfrI	CTTAAG	1 cut(s)	683
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	1 cut(s)	183
BlpI	GCTNAGC	1 cut(s)	328
BlsI	GCNGC	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	631
BmeT110I	CYCGRG	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	631
BmiI	GGNNCC	5 cut(s)	418, 577, 882, 1044, 1260
BmrI	ACTGGG	1 cut(s)	1000
BmsI	GCATC	3 cut(s)	10, 296, 991
BmuI	ACTGGG	1 cut(s)	1000
Bpu10I	CCTNAGC	2 cut(s)	132, 978
Bpu1102I	GCTNAGC	1 cut(s)	328
BsaI	GGTCTC	1 cut(s)	1224
BsaXI	ACNNNNNCTCC	2 cut(s)	785, 815
Bsc4I	CCNNNNNNNGG	3 cut(s)	706, 1142, 1240
Bse1I	ACTGG	3 cut(s)	61, 958, 1006
Bse21I	CCTNAGG	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	600
BseGI	GGATG	2 cut(s)	76, 869
BseLI	CCNNNNNNNGG	3 cut(s)	706, 1142, 1240
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	6 cut(s)	91, 123, 342, 405, 969, 1038
BseNI	ACTGG	3 cut(s)	61, 958, 1006
BseXI	GCAGC	1 cut(s)	194
Bsh1236I	CGCG	2 cut(s)	904, 1226
BshFI	GGCC	2 cut(s)	8, 202
BshNI	GGYRCC	1 cut(s)	1042
BsiHKAI	GWGCWC	2 cut(s)	64, 984
BsiHKCI	CYCGRG	1 cut(s)	34
BslI	CCNNNNNNNGG	3 cut(s)	706, 1142, 1240
BsmAI	GTCTC	2 cut(s)	31, 1224
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	2 cut(s)	8, 202
Bso31I	GGTCTC	1 cut(s)	1224
BsoBI	CYCGRG	1 cut(s)	34
Bsp1286I	GDGCHC	2 cut(s)	64, 984
Bsp1407I	TGTACA	1 cut(s)	151
Bsp143I	GATC	3 cut(s)	118, 224, 346
Bsp1720I	GCTNAGC	1 cut(s)	328
BspACI	CCGC	4 cut(s)	332, 573, 1224, 1262
BspANI	GGCC	2 cut(s)	8, 202
BspCNI	CTCAG	6 cut(s)	90, 124, 341, 404, 970, 1039
BspFNI	CGCG	2 cut(s)	904, 1226
BspHI	TCATGA	2 cut(s)	676, 1030
BspLI	GGNNCC	5 cut(s)	418, 577, 882, 1044, 1260
BspPI	GGATC	1 cut(s)	232
BspT107I	GGYRCC	1 cut(s)	1042
BspTI	CTTAAG	1 cut(s)	683
BspTNI	GGTCTC	1 cut(s)	1224
BsrDI	GCAATG	1 cut(s)	600
BsrGI	TGTACA	1 cut(s)	151
BsrI	ACTGG	3 cut(s)	61, 958, 1006
BssMI	GATC	3 cut(s)	118, 224, 346
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	1 cut(s)	790
BstAFI	CTTAAG	1 cut(s)	683
BstAUI	TGTACA	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	841
BstDEI	CTNAG	7 cut(s)	77, 132, 328, 391, 978, 1047, 1296
BstEII	GGTNACC	2 cut(s)	106, 956
BstF5I	GGATG	2 cut(s)	76, 869
BstFNI	CGCG	2 cut(s)	904, 1226
BstKTI	GATC	3 cut(s)	121, 227, 349
BstMAI	GTCTC	2 cut(s)	31, 1224
BstMBI	GATC	3 cut(s)	118, 224, 346
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 470, 479
BstNSI	RCATGY	2 cut(s)	173, 661
BstPI	GGTNACC	2 cut(s)	106, 956
BstUI	CGCG	2 cut(s)	904, 1226
BstV1I	GCAGC	1 cut(s)	194
BstX2I	RGATCY	2 cut(s)	118, 224
BstXI	CCANNNNNNTGG	1 cut(s)	662
BstYI	RGATCY	2 cut(s)	118, 224
Bsu36I	CCTNAGG	1 cut(s)	77
BsuRI	GGCC	2 cut(s)	8, 202
BtgZI	GCGATG	1 cut(s)	426
BtsCI	GGATG	2 cut(s)	76, 869
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	841
CaiI	CAGNNNCTG	2 cut(s)	188, 398
CciI	TCATGA	2 cut(s)	676, 1030
Cfr13I	GGNCC	1 cut(s)	631
CseI	GACGC	1 cut(s)	893
Csp6I	GTAC	3 cut(s)	152, 1026, 1043
CspCI	CAANNNNNGTGG	4 cut(s)	279, 314, 421, 456
CviAII	CATG	6 cut(s)	170, 658, 677, 985, 1031, 1070
CviQI	GTAC	3 cut(s)	152, 1026, 1043
DdeI	CTNAG	7 cut(s)	77, 132, 328, 391, 978, 1047, 1296
DpnI	GATC	3 cut(s)	120, 226, 348
DpnII	GATC	3 cut(s)	118, 224, 346
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	790
EarI	CTCTTC	1 cut(s)	790
Ecl136II	GAGCTC	1 cut(s)	982
Eco24I	GRGCYC	1 cut(s)	984
Eco31I	GGTCTC	1 cut(s)	1224
Eco32I	GATATC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	631
Eco53kI	GAGCTC	1 cut(s)	982
Eco57I	CTGAAG	1 cut(s)	263
Eco81I	CCTNAGG	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	34
Eco91I	GGTNACC	2 cut(s)	106, 956
EcoICRI	GAGCTC	1 cut(s)	982
EcoO109I	RGGNCCY	1 cut(s)	631
EcoO65I	GGTNACC	2 cut(s)	106, 956
EcoRI	GAATTC	1 cut(s)	253
EcoRV	GATATC	1 cut(s)	363
EcoT22I	ATGCAT	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	984
FaeI	CATG	6 cut(s)	173, 661, 680, 988, 1034, 1073
FatI	CATG	6 cut(s)	169, 657, 676, 984, 1030, 1069
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	2 cut(s)	83, 856
FriOI	GRGCYC	1 cut(s)	984
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	4 cut(s)	321, 701, 915, 1208
GluI	GCNGC	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	8, 202
HgaI	GACGC	1 cut(s)	893
Hin1II	CATG	6 cut(s)	173, 661, 680, 988, 1034, 1073
HinfI	GANTC	6 cut(s)	302, 615, 800, 1101, 1132, 1202
HphI	GGTGA	2 cut(s)	261, 1073
Hpy166II	GTNNAC	1 cut(s)	1092
Hpy188I	TCNGA	9 cut(s)	19, 190, 282, 318, 367, 479, 515, 565, 733
Hpy188III	TCNNGA	8 cut(s)	36, 131, 350, 644, 677, 778, 1031, 1199
Hpy8I	GTNNAC	1 cut(s)	1092
HpyAV	CCTTC	4 cut(s)	287, 592, 864, 1058
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4IV	ACGT	1 cut(s)	890
HpyCH4V	TGCA	7 cut(s)	43, 176, 287, 593, 626, 843, 1192
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 470, 479
HpyF3I	CTNAG	7 cut(s)	77, 132, 328, 391, 978, 1047, 1296
HpySE526I	ACGT	1 cut(s)	890
Hsp92II	CATG	6 cut(s)	173, 661, 680, 988, 1034, 1073
KpnI	GGTACC	1 cut(s)	1046
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	118, 224, 346
LmnI	GCTCC	3 cut(s)	133, 416, 886
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	3 cut(s)	10, 296, 991
MaeI	CTAG	4 cut(s)	321, 701, 915, 1208
MaeII	ACGT	1 cut(s)	890
MaeIII	GTNAC	3 cut(s)	106, 267, 956
MalI	GATC	3 cut(s)	120, 226, 348
MboI	GATC	3 cut(s)	118, 224, 346
MboII	GAAGA	3 cut(s)	370, 722, 777
MfeI	CAATTG	2 cut(s)	83, 137
MflI	RGATCY	2 cut(s)	118, 224
MhlI	GDGCHC	2 cut(s)	64, 984
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	8 cut(s)	83, 113, 137, 157, 208, 248, 253, 454
MluI	ACGCGT	1 cut(s)	902
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	2 cut(s)	809, 1126
MmeI	TCCRAC	3 cut(s)	543, 791, 889
Mox20I	TGGCCA	1 cut(s)	8
Mph1103I	ATGCAT	1 cut(s)	289
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	3 cut(s)	569, 684, 1056
MslI	CAYNNNNRTG	1 cut(s)	1074
Msp20I	TGGCCA	1 cut(s)	8
MspA1I	CMGCKG	2 cut(s)	308, 332
MspCI	CTTAAG	1 cut(s)	683
MunI	CAATTG	2 cut(s)	83, 137
Mva1269I	GAATGC	1 cut(s)	289
MvnI	CGCG	2 cut(s)	904, 1226
MwoI	GCNNNNNNNGC	3 cut(s)	182, 470, 479
NdeII	GATC	3 cut(s)	118, 224, 346
NlaIII	CATG	6 cut(s)	173, 661, 680, 988, 1034, 1073
NlaIV	GGNNCC	5 cut(s)	418, 577, 882, 1044, 1260
NmuCI	GTSAC	1 cut(s)	267
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	2 cut(s)	173, 661
PaeR7I	CTCGAG	1 cut(s)	34
PagI	TCATGA	2 cut(s)	676, 1030
PctI	GAATGC	1 cut(s)	289
PfeI	GAWTC	4 cut(s)	302, 615, 1101, 1202
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	2 cut(s)	808, 1126
PpsI	GAGTC	2 cut(s)	808, 1126
PpuMI	RGGWCCY	1 cut(s)	631
Psp124BI	GAGCTC	1 cut(s)	984
Psp5II	RGGWCCY	1 cut(s)	631
PspEI	GGTNACC	2 cut(s)	106, 956
PspN4I	GGNNCC	5 cut(s)	418, 577, 882, 1044, 1260
PspPI	GGNCC	1 cut(s)	631
PspPPI	RGGWCCY	1 cut(s)	631
PstNI	CAGNNNCTG	2 cut(s)	188, 398
PsuI	RGATCY	2 cut(s)	118, 224
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	3 cut(s)	153, 1027, 1044
RsaNI	GTAC	3 cut(s)	152, 1026, 1043
RseI	CAYNNNNRTG	1 cut(s)	1074
SacI	GAGCTC	1 cut(s)	984
SaqAI	TTAA	3 cut(s)	569, 684, 1056
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	3 cut(s)	118, 224, 346
Sau96I	GGNCC	1 cut(s)	631
SchI	GAGTC	2 cut(s)	809, 1126
SduI	GDGCHC	2 cut(s)	64, 984
SfaNI	GCATC	3 cut(s)	10, 296, 991
Sfr274I	CTCGAG	1 cut(s)	34
SinI	GGWCC	1 cut(s)	631
SlaI	CTCGAG	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	1074
SmlI	CTYRAG	2 cut(s)	34, 683
SmoI	CTYRAG	2 cut(s)	34, 683
SpeI	ACTAGT	1 cut(s)	1207
Sse9I	AATT	8 cut(s)	83, 113, 137, 157, 208, 248, 253, 454
SsiI	CCGC	4 cut(s)	332, 573, 1224, 1262
SspMI	CTAG	4 cut(s)	321, 701, 915, 1208
SstI	GAGCTC	1 cut(s)	984
TaaI	ACNGT	1 cut(s)	425
TaiI	ACGT	1 cut(s)	893
TaqI	TCGA	3 cut(s)	35, 257, 1198
TasI	AATT	8 cut(s)	83, 113, 137, 157, 208, 248, 253, 454
TatI	WGTACW	1 cut(s)	151
TfiI	GAWTC	4 cut(s)	302, 615, 1101, 1202
Tru1I	TTAA	3 cut(s)	569, 684, 1056
Tru9I	TTAA	3 cut(s)	569, 684, 1056
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	4 cut(s)	150, 252, 387, 611
TspGWI	ACGGA	1 cut(s)	740
TspRI	CASTG	1 cut(s)	31
Vha464I	CTTAAG	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	631
XapI	RAATTY	4 cut(s)	157, 208, 253, 454
XceI	RCATGY	2 cut(s)	173, 661
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XhoI	CTCGAG	1 cut(s)	34
XspI	CTAG	4 cut(s)	321, 701, 915, 1208
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.