Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018193

Physical Location & Seq

Genomic Coordinates Reverse (-)

86900436 .. 86901540

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35515

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAAAGTAACTAAATCGGAGTTGATAGCTCCTGAGATGTTACTGAAATCTGTACAGAATTCATCAAAGCATGTTGTGGTAGCAGCTTCTGATAATAAAAGGTCAGAAAATTCCAATGACACAGGATCTGTTGATTTGTTGATTAGTGAATTGAATTCGATTGCATTGTCACCCAACTTTGAGAATGCATCAAAGGAAGGAGATTCAGCTGTCAATCAATCTAAAGGCTCATTGGAAAGTTATGTTGATCAAGAAAAGAAGATATTAGAGTATGTAAGTGTGAAGGACAGATCAGTTTCAACCAAAGTTAGTGATGGTTTCAGCTCTACTGTAGAAAGCCAAGTCCAGGCTGCTTTTCTCACTTCTAAACCAGTGCCAGTCTCCATTGCCATTCCAACAAGTTCTCGATCAAACGATGTTATTTCCTTTCTAATACAAGGCACTCAGCCGCTTCCTTGTACTTCTTCTGAAAGACTTCTACTGAACTGTAGGCAGGCCTCTCAGCCTATGGAGCTATGGCAATTACCACTCATTCCTCCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

181

Amino Acids

19.52

Weight (kDa)

5.24

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018193)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0000351 RchiOBHm_Chr5g0080871
rosa_multiflora	Rmu_co8300683.1_g000001 Rmu_sc0002119.1_g000001 Rmu_ssc0000385.1_g000013
rosa_rugosa	Rorug07G0031000
rosa_samantha	Rh5AG002800 Rh5BG004000 Rh5CG003100 Rh5DG003000
rosa_wichuraiana	Rw6G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	449
AclWI	GGATC	1 cut(s)	133
AcsI	RAATTY	3 cut(s)	58, 109, 154
AfaI	GTAC	2 cut(s)	54, 460
AfiI	CCNNNNNNNGG	1 cut(s)	346
AgsI	TTSAA	2 cut(s)	154, 300
AjnI	CCWGG	2 cut(s)	345, 538
AluBI	AGCT	5 cut(s)	29, 86, 209, 324, 514
AluI	AGCT	5 cut(s)	29, 86, 209, 324, 514
Alw26I	GTCTC	1 cut(s)	385
AlwI	GGATC	1 cut(s)	133
AlwNI	CAGNNNCTG	2 cut(s)	89, 128
AoxI	GGCC	1 cut(s)	495
ApeKI	GCWGC	2 cut(s)	83, 350
ApoI	RAATTY	3 cut(s)	58, 109, 154
Asp700I	GAANNNNTTC	1 cut(s)	474
AsuHPI	GGTGA	1 cut(s)	162
BbvI	GCAGC	2 cut(s)	95, 337
BccI	CCATC	1 cut(s)	308
BciT130I	CCWGG	2 cut(s)	347, 540
BclI	TGATCA	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	385
BfmI	CTRYAG	2 cut(s)	330, 487
BisI	GCNGC	3 cut(s)	84, 351, 449
BlsI	GCNGC	3 cut(s)	85, 352, 450
Bme1390I	CCNGG	2 cut(s)	347, 540
BmrFI	CCNGG	2 cut(s)	347, 540
BmsI	GCATC	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse1I	ACTGG	2 cut(s)	371, 377
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	2 cut(s)	347, 540
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	3 cut(s)	24, 458, 515
BseNI	ACTGG	2 cut(s)	371, 377
BseXI	GCAGC	2 cut(s)	95, 337
BshFI	GGCC	1 cut(s)	497
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	385
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	497
Bsp1407I	TGTACA	1 cut(s)	52
Bsp143I	GATC	4 cut(s)	125, 247, 290, 407
BspACI	CCGC	1 cut(s)	449
BspANI	GGCC	1 cut(s)	497
BspCNI	CTCAG	3 cut(s)	25, 457, 514
BspPI	GGATC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	384
BsrGI	TGTACA	1 cut(s)	52
BsrI	ACTGG	2 cut(s)	371, 377
BssMI	GATC	4 cut(s)	125, 247, 290, 407
Bst2UI	CCWGG	2 cut(s)	347, 540
Bst4CI	ACNGT	2 cut(s)	331, 488
BstAUI	TGTACA	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	3 cut(s)	33, 444, 501
BstKTI	GATC	4 cut(s)	128, 250, 293, 410
BstMAI	GTCTC	1 cut(s)	385
BstMBI	GATC	4 cut(s)	125, 247, 290, 407
BstMWI	GCNNNNNNNGC	1 cut(s)	511
BstNI	CCWGG	2 cut(s)	347, 540
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	345, 538
BstSFI	CTRYAG	2 cut(s)	330, 487
BstV1I	GCAGC	2 cut(s)	95, 337
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	497
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	495
CaiI	CAGNNNCTG	2 cut(s)	89, 128
Csp6I	GTAC	2 cut(s)	53, 459
CviAII	CATG	1 cut(s)	71
CviQI	GTAC	2 cut(s)	53, 459
DdeI	CTNAG	3 cut(s)	33, 444, 501
DpnI	GATC	4 cut(s)	127, 249, 292, 409
DpnII	GATC	4 cut(s)	125, 247, 290, 407
Eco147I	AGGCCT	1 cut(s)	497
EcoRI	GAATTC	2 cut(s)	58, 154
EcoRII	CCWGG	2 cut(s)	345, 538
EcoT22I	ATGCAT	1 cut(s)	190
FaeI	CATG	1 cut(s)	74
FaiI	YATR	5 cut(s)	72, 243, 273, 509, 517
FatI	CATG	1 cut(s)	70
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	3 cut(s)	84, 351, 449
Fsp4HI	GCNGC	3 cut(s)	84, 351, 449
GluI	GCNGC	3 cut(s)	84, 351, 449
HaeIII	GGCC	1 cut(s)	497
Hin1II	CATG	1 cut(s)	74
HinfI	GANTC	1 cut(s)	203
HphI	GGTGA	1 cut(s)	162
Hpy188I	TCNGA	4 cut(s)	19, 91, 106, 469
Hpy188III	TCNNGA	3 cut(s)	32, 251, 405
HpyAV	CCTTC	2 cut(s)	191, 277
HpyCH4III	ACNGT	2 cut(s)	331, 488
HpyCH4V	TGCA	2 cut(s)	164, 188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	511
HpyF3I	CTNAG	3 cut(s)	33, 444, 501
Hsp92II	CATG	1 cut(s)	74
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	4 cut(s)	125, 247, 290, 407
LmnI	GCTCC	2 cut(s)	34, 511
LpnPI	CCDG	8 cut(s)	45, 108, 332, 359, 384, 390, 479, 525
Lsp1109I	GCAGC	2 cut(s)	95, 337
LweI	GCATC	1 cut(s)	197
MaeIII	GTNAC	3 cut(s)	7, 39, 168
MalI	GATC	4 cut(s)	127, 249, 292, 409
MboI	GATC	4 cut(s)	125, 247, 290, 407
MboII	GAAGA	2 cut(s)	271, 456
MflI	RGATCY	1 cut(s)	125
MluCI	AATT	5 cut(s)	58, 109, 149, 154, 521
MmeI	TCCRAC	1 cut(s)	419
MnlI	CCTC	2 cut(s)	508, 546
Mph1103I	ATGCAT	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	209
MspR9I	CCNGG	2 cut(s)	347, 540
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	2 cut(s)	347, 540
MwoI	GCNNNNNNNGC	1 cut(s)	511
NdeII	GATC	4 cut(s)	125, 247, 290, 407
NlaIII	CATG	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	168
NsiI	ATGCAT	1 cut(s)	190
NspI	RCATGY	1 cut(s)	74
PceI	AGGCCT	1 cut(s)	497
PctI	GAATGC	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	3 cut(s)	85, 352, 450
Psp6I	CCWGG	2 cut(s)	345, 538
PspGI	CCWGG	2 cut(s)	345, 538
PstNI	CAGNNNCTG	2 cut(s)	89, 128
PsuI	RGATCY	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	2 cut(s)	54, 460
RsaNI	GTAC	2 cut(s)	53, 459
SatI	GCNGC	3 cut(s)	84, 351, 449
Sau3AI	GATC	4 cut(s)	125, 247, 290, 407
ScrFI	CCNGG	2 cut(s)	347, 540
SetI	ASST	6 cut(s)	31, 88, 104, 211, 326, 516
SfaNI	GCATC	1 cut(s)	197
SfcI	CTRYAG	2 cut(s)	330, 487
Sse9I	AATT	5 cut(s)	58, 109, 149, 154, 521
SseBI	AGGCCT	1 cut(s)	497
SsiI	CCGC	1 cut(s)	449
StuI	AGGCCT	1 cut(s)	497
StyD4I	CCNGG	2 cut(s)	345, 538
TaaI	ACNGT	2 cut(s)	331, 488
TaqI	TCGA	2 cut(s)	158, 406
TasI	AATT	5 cut(s)	58, 109, 149, 154, 521
TatI	WGTACW	2 cut(s)	52, 458
TauI	GCSGC	1 cut(s)	451
TfiI	GAWTC	1 cut(s)	203
TscAI	CASTG	1 cut(s)	378
TseFI	GTSAC	1 cut(s)	168
TseI	GCWGC	2 cut(s)	83, 350
Tsp45I	GTSAC	1 cut(s)	168
TspDTI	ATGAA	2 cut(s)	17, 51
TspRI	CASTG	1 cut(s)	378
XapI	RAATTY	3 cut(s)	58, 109, 154
XceI	RCATGY	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	474
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.