Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0018193

Physical Location & Seq

Genomic Coordinates Reverse (-)

68062697 .. 68064196

Gene Structure 1500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G044960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGGCAGAAGTTAGGTCCTTATTGCTCTCTGCTGAATTTGAGATTGAATTGGAACATAAAGCATTGCCATTATCTTCTCTTGCTGCCATGGTTGCACTCAATGGTATCACCAATTTTTCATCACAAAATGGTCAGCTTAGTATGCCTATAGTTGCTCAGAGTCAAGGGTTCTACAATTCCTGCTATATGAATGGATGTTCTGTACCTTCTTACATGTCTAATGCTGCACCAAAACAAGGCATGAATAATCCTTCATATGCAAATGGGTGTTCAGGAATGATGTCTGGTATGAATGGTATGTCTCACAGCCCTACATTGCTACCTAATATGTCAACTATGAACCATTTCAATGCTACTCCCACCACTGCAACAACTCAACTTGTACCTTCCTCAAACACATTGACTGCAAGTGTTGGTTTTTCAAATGGTGCAAACTTTGGTAATGGTTTCTCAAATACTCCATTTGGTATGCACAATAATGGTTTCACTGATGTATCTCAGTTCAACAATAATGGCTATCTAGCTTCCTCTCCAGCTTCCTCTGTTGCTTTTATAGCTAACAACAATGGTGGTGTCATCTCTCAACAAGGTCCATCTCAGAACAATTTTGGTTCTACAGTTCAACAGAACAATGGATATTCTCAGTACAACAATGGAAGGAGCAATCCAGGTAGCTTCAATGGTTCAAATGGATACTCAGAAAACAATAATGGTGGTTACTCACAGAACATCAATGAAGGCTACTCAACATCAAATGGTGGTGCATCACGACGCAATGTGGGATCTTATCAAAAATCAAGATATTCAAACTCAGAAGACCATCATGGAAACAATAGGAGCTTCAACAAGATTAATACTAATGGCTCAACCATAATTTCCTCTAAACTGCAACCAAAAGCAGCTGGTGTTCAAAGGATAGAATCAGATGATCTCAGGCAATTGCCCACACACACTATGAAAGTAACTAAATCGGAGTTGATAGCTCCTGAGATGTTATTGAAATCTGTACAGAATTCATCAAAGCATGTTGTGGTAGCAGCTTCTGATAATAAAAGGTCAGAAAATTCCAATGACACAGGATCTATTGATTTGTTGATTAGTGAATTGAATTCGATTGCATTGTCACCCAACTTTGAGAATGCATCAAAGGAAGGAGATTCAGCTGTCAATCAATCTAAAGGCTCATTGGAAAGTTATGTTGATCAAGAAAAGAAGATATTAGAGTATGTAAGTGTGAAGGACAGATCAGTTTCAACCAAAGTTAGTGATGGTTTCAGCTCTACTGTAGAAAGCCAAGTCCAGGCAGCTTTTCTCACTTCTAAACCAGTGCCAGTCTCCATTGCCATTCCAACAAGTTCTCGATCAAACGATGTTATTTCCTTTCTAATACAAGGCACTCAGCCGCTTCCTTGTACTTCTTCTGAAAGACTTCTACTGAACTGTAGGCAGGCCTCTCAGCCTATGGAGCTATGGCAATTACCACTCATTCCTCCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

499

Amino Acids

53.18

Weight (kDa)

6.46

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018193)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0000351 RchiOBHm_Chr5g0080871
rosa_multiflora	Rmu_co8300683.1_g000001 Rmu_sc0002119.1_g000001 Rmu_ssc0000385.1_g000013
rosa_rugosa	Rorug07G0031000
rosa_samantha	Rh5AG002800 Rh5BG004000 Rh5CG003100 Rh5DG003000
rosa_wichuraiana	Rw6G044960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1403
AclWI	GGATC	2 cut(s)	790, 1087
AcsI	RAATTY	4 cut(s)	35, 1012, 1063, 1108
AfaI	GTAC	5 cut(s)	204, 384, 647, 1008, 1414
AfiI	CCNNNNNNNGG	2 cut(s)	236, 1300
AflIII	ACRYGT	1 cut(s)	213
AjnI	CCWGG	3 cut(s)	667, 1299, 1492
Alw26I	GTCTC	2 cut(s)	306, 1339
AlwI	GGATC	2 cut(s)	790, 1087
AlwNI	CAGNNNCTG	1 cut(s)	1043
AoxI	GGCC	1 cut(s)	1449
ApeKI	GCWGC	5 cut(s)	83, 224, 899, 1037, 1304
ApoI	RAATTY	4 cut(s)	35, 1012, 1063, 1108
AseI	ATTAAT	1 cut(s)	852
Asp700I	GAANNNNTTC	2 cut(s)	344, 1428
AspS9I	GGNCC	2 cut(s)	15, 590
AsuHPI	GGTGA	2 cut(s)	100, 1116
AvaII	GGWCC	2 cut(s)	15, 590
BaeI	ACNNNNGTAYC	2 cut(s)	477, 510
BbsI	GAAGAC	1 cut(s)	822
BbvI	GCAGC	5 cut(s)	70, 211, 911, 1049, 1316
BccI	CCATC	3 cut(s)	601, 828, 1262
BciT130I	CCWGG	3 cut(s)	669, 1301, 1494
BciVI	GTATCC	1 cut(s)	686
BclI	TGATCA	1 cut(s)	1201
BcoDI	GTCTC	2 cut(s)	306, 1339
BfaI	CTAG	1 cut(s)	521
BfmI	CTRYAG	4 cut(s)	147, 615, 1284, 1441
BfuI	GTATCC	1 cut(s)	686
BisI	GCNGC	6 cut(s)	84, 225, 900, 1038, 1305, 1403
BlsI	GCNGC	6 cut(s)	85, 226, 901, 1039, 1306, 1404
Bme1390I	CCNGG	3 cut(s)	669, 1301, 1494
Bme18I	GGWCC	2 cut(s)	15, 590
BmgT120I	GGNCC	2 cut(s)	15, 590
BmrFI	CCNGG	3 cut(s)	669, 1301, 1494
BmsI	GCATC	2 cut(s)	773, 1151
BpiI	GAAGAC	1 cut(s)	822
BpmI	CTGGAG	1 cut(s)	516
BsaJI	CCNNGG	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 1300
Bse1I	ACTGG	2 cut(s)	1325, 1331
Bse3DI	GCAATG	4 cut(s)	62, 314, 781, 1338
BseBI	CCWGG	3 cut(s)	669, 1301, 1494
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	200
BseLI	CCNNNNNNNGG	2 cut(s)	236, 1300
BseMI	GCAATG	4 cut(s)	62, 314, 781, 1338
BseNI	ACTGG	2 cut(s)	1325, 1331
BseXI	GCAGC	5 cut(s)	70, 211, 911, 1049, 1316
BsgI	GTGCAG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	1451
BslI	CCNNNNNNNGG	2 cut(s)	236, 1300
BsmAI	GTCTC	2 cut(s)	306, 1339
BsmI	GAATGC	1 cut(s)	1144
BsnI	GGCC	1 cut(s)	1451
Bsp1407I	TGTACA	1 cut(s)	1006
Bsp143I	GATC	6 cut(s)	782, 928, 1079, 1201, 1244, 1361
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	1 cut(s)	1403
BspANI	GGCC	1 cut(s)	1451
BspPI	GGATC	2 cut(s)	790, 1087
BsrDI	GCAATG	4 cut(s)	62, 314, 781, 1338
BsrGI	TGTACA	1 cut(s)	1006
BsrI	ACTGG	2 cut(s)	1325, 1331
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	6 cut(s)	782, 928, 1079, 1201, 1244, 1361
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	3 cut(s)	669, 1301, 1494
Bst4CI	ACNGT	3 cut(s)	619, 1285, 1442
BstAUI	TGTACA	1 cut(s)	1006
BstC8I	GCNNGC	1 cut(s)	1449
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	200
BstKTI	GATC	6 cut(s)	785, 931, 1082, 1204, 1247, 1364
BstMAI	GTCTC	2 cut(s)	306, 1339
BstMBI	GATC	6 cut(s)	782, 928, 1079, 1201, 1244, 1361
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 142, 554, 1465
BstNI	CCWGG	3 cut(s)	669, 1301, 1494
BstNSI	RCATGY	2 cut(s)	217, 1028
BstSCI	CCNGG	3 cut(s)	667, 1299, 1492
BstSFI	CTRYAG	4 cut(s)	147, 615, 1284, 1441
BstV1I	GCAGC	5 cut(s)	70, 211, 911, 1049, 1316
BstV2I	GAAGAC	1 cut(s)	822
BstX2I	RGATCY	2 cut(s)	782, 1079
BstYI	RGATCY	2 cut(s)	782, 1079
BsuI	GTATCC	1 cut(s)	686
BsuRI	GGCC	1 cut(s)	1451
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	200
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	3 cut(s)	363, 486, 1332
Cac8I	GCNNGC	1 cut(s)	1449
CaiI	CAGNNNCTG	1 cut(s)	1043
Cfr13I	GGNCC	2 cut(s)	15, 590
CseI	GACGC	1 cut(s)	780
Csp6I	GTAC	5 cut(s)	203, 383, 646, 1007, 1413
CspCI	CAANNNNNGTGG	4 cut(s)	550, 585, 694, 729
CviAII	CATG	5 cut(s)	88, 214, 241, 824, 1025
CviQI	GTAC	5 cut(s)	203, 383, 646, 1007, 1413
DpnI	GATC	6 cut(s)	784, 930, 1081, 1203, 1246, 1363
DpnII	GATC	6 cut(s)	782, 928, 1079, 1201, 1244, 1361
Eco130I	CCWWGG	1 cut(s)	87
Eco147I	AGGCCT	1 cut(s)	1451
Eco47I	GGWCC	2 cut(s)	15, 590
EcoO109I	RGGNCCY	1 cut(s)	15
EcoRI	GAATTC	2 cut(s)	1012, 1108
EcoRII	CCWGG	3 cut(s)	667, 1299, 1492
EcoT14I	CCWWGG	1 cut(s)	87
EcoT22I	ATGCAT	1 cut(s)	1144
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	5 cut(s)	91, 217, 244, 827, 1028
FatI	CATG	5 cut(s)	87, 213, 240, 823, 1024
FauNDI	CATATG	1 cut(s)	256
FbaI	TGATCA	1 cut(s)	1201
Fnu4HI	GCNGC	6 cut(s)	84, 225, 900, 1038, 1305, 1403
FokI	GGATG	1 cut(s)	207
Fsp4HI	GCNGC	6 cut(s)	84, 225, 900, 1038, 1305, 1403
FspBI	CTAG	1 cut(s)	521
GluI	GCNGC	6 cut(s)	84, 225, 900, 1038, 1305, 1403
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	1 cut(s)	1451
HgaI	GACGC	1 cut(s)	780
Hin1II	CATG	5 cut(s)	91, 217, 244, 827, 1028
HincII	GTYRAC	1 cut(s)	333
HindII	GTYRAC	1 cut(s)	333
HinfI	GANTC	3 cut(s)	160, 920, 1157
HphI	GGTGA	2 cut(s)	100, 1116
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	9 cut(s)	159, 600, 700, 814, 925, 973, 1045, 1060, 1423
Hpy188III	TCNNGA	6 cut(s)	273, 768, 798, 986, 1205, 1359
Hpy8I	GTNNAC	1 cut(s)	333
Hpy99I	CGWCG	1 cut(s)	774
HpyAV	CCTTC	7 cut(s)	216, 261, 396, 651, 731, 1145, 1231
HpyCH4III	ACNGT	3 cut(s)	619, 1285, 1442
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 142, 554, 1465
Hsp92II	CATG	5 cut(s)	91, 217, 244, 827, 1028
Ksp22I	TGATCA	1 cut(s)	1201
Kzo9I	GATC	6 cut(s)	782, 928, 1079, 1201, 1244, 1361
LmnI	GCTCC	4 cut(s)	660, 837, 988, 1465
Lsp1109I	GCAGC	5 cut(s)	70, 211, 911, 1049, 1316
LweI	GCATC	2 cut(s)	773, 1151
MaeI	CTAG	1 cut(s)	521
MaeIII	GTNAC	3 cut(s)	716, 961, 1122
MalI	GATC	6 cut(s)	784, 930, 1081, 1203, 1246, 1363
MboI	GATC	6 cut(s)	782, 928, 1079, 1201, 1244, 1361
MboII	GAAGA	4 cut(s)	66, 827, 1225, 1410
MfeI	CAATTG	1 cut(s)	938
MflI	RGATCY	2 cut(s)	782, 1079
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	1373
MnlI	CCTC	6 cut(s)	400, 538, 550, 889, 1462, 1500
Mph1103I	ATGCAT	1 cut(s)	1144
MroXI	GAANNNNTTC	2 cut(s)	344, 1428
MseI	TTAA	1 cut(s)	852
MslI	CAYNNNNRTG	2 cut(s)	348, 477
MspA1I	CMGCKG	2 cut(s)	902, 1163
MspR9I	CCNGG	3 cut(s)	669, 1301, 1494
MunI	CAATTG	1 cut(s)	938
Mva1269I	GAATGC	1 cut(s)	1144
MvaI	CCWGG	3 cut(s)	669, 1301, 1494
MwoI	GCNNNNNNNGC	4 cut(s)	92, 142, 554, 1465
NcoI	CCATGG	1 cut(s)	87
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	6 cut(s)	782, 928, 1079, 1201, 1244, 1361
NlaIII	CATG	5 cut(s)	91, 217, 244, 827, 1028
NmuCI	GTSAC	1 cut(s)	1122
NsiI	ATGCAT	1 cut(s)	1144
NspI	RCATGY	2 cut(s)	217, 1028
PceI	AGGCCT	1 cut(s)	1451
PciI	ACATGT	1 cut(s)	213
PctI	GAATGC	1 cut(s)	1144
PdmI	GAANNNNTTC	2 cut(s)	344, 1428
PfeI	GAWTC	2 cut(s)	920, 1157
PkrI	GCNGC	6 cut(s)	85, 226, 901, 1039, 1306, 1404
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
PpuMI	RGGWCCY	1 cut(s)	15
PscI	ACATGT	1 cut(s)	213
PshBI	ATTAAT	1 cut(s)	852
Psp5II	RGGWCCY	1 cut(s)	15
Psp6I	CCWGG	3 cut(s)	667, 1299, 1492
PspGI	CCWGG	3 cut(s)	667, 1299, 1492
PspPI	GGNCC	2 cut(s)	15, 590
PspPPI	RGGWCCY	1 cut(s)	15
PstNI	CAGNNNCTG	1 cut(s)	1043
PsuI	RGATCY	2 cut(s)	782, 1079
PvuII	CAGCTG	2 cut(s)	902, 1163
RsaI	GTAC	5 cut(s)	204, 384, 647, 1008, 1414
RsaNI	GTAC	5 cut(s)	203, 383, 646, 1007, 1413
RseI	CAYNNNNRTG	2 cut(s)	348, 477
SaqAI	TTAA	1 cut(s)	852
SatI	GCNGC	6 cut(s)	84, 225, 900, 1038, 1305, 1403
Sau3AI	GATC	6 cut(s)	782, 928, 1079, 1201, 1244, 1361
Sau96I	GGNCC	2 cut(s)	15, 590
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	3 cut(s)	669, 1301, 1494
SfaNI	GCATC	2 cut(s)	773, 1151
SfcI	CTRYAG	4 cut(s)	147, 615, 1284, 1441
SinI	GGWCC	2 cut(s)	15, 590
SmiMI	CAYNNNNRTG	2 cut(s)	348, 477
SseBI	AGGCCT	1 cut(s)	1451
SsiI	CCGC	1 cut(s)	1403
SspMI	CTAG	1 cut(s)	521
StuI	AGGCCT	1 cut(s)	1451
StyD4I	CCNGG	3 cut(s)	667, 1299, 1492
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	3 cut(s)	619, 1285, 1442
TaqI	TCGA	2 cut(s)	1112, 1360
TatI	WGTACW	3 cut(s)	645, 1006, 1412
TauI	GCSGC	1 cut(s)	1405
TfiI	GAWTC	2 cut(s)	920, 1157
Tru1I	TTAA	1 cut(s)	852
Tru9I	TTAA	1 cut(s)	852
TscAI	CASTG	3 cut(s)	370, 493, 1332
TseFI	GTSAC	1 cut(s)	1122
TseI	GCWGC	5 cut(s)	83, 224, 899, 1037, 1304
Tsp45I	GTSAC	1 cut(s)	1122
TspDTI	ATGAA	9 cut(s)	108, 203, 243, 257, 305, 353, 750, 971, 1005
TspRI	CASTG	3 cut(s)	370, 493, 1332
VpaK11BI	GGWCC	2 cut(s)	15, 590
VspI	ATTAAT	1 cut(s)	852
XapI	RAATTY	4 cut(s)	35, 1012, 1063, 1108
XceI	RCATGY	2 cut(s)	217, 1028
XmnI	GAANNNNTTC	2 cut(s)	344, 1428
XspI	CTAG	1 cut(s)	521
Zsp2I	ATGCAT	1 cut(s)	1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.