RchiOBHm_Chr5g0015631

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0014856
Physical Location & Seq
Reverse (-)
10835517 .. 10836531
1015 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29605

Sequence Viewer

Length: 588 bp
ATGTGCCGCCGCGCCGTTGATCGTAGCTCAGGTACTTTGGTTGTTCTTACTCTCCAGAACTTCCGCACCGGCACTGATAAGCTCCTCAAGTACATCACTAACAGTTGCAGAGGAATCAAACGCCTAACTTTGGCGAATTGCGTGAAAATAACAGATGAGCGGTTGAGGGAAGTAGCTTCCAAACTTCCGTTGTTGGAGGACCTTGGCATTTCACACGGCTCAGTCTCGCAAAAAACCGTGGAAGTAATTGGGAAATCTTGCCCTCTTTTGAAATCATTGAGATGGAACAAAAATATTGAAATTGATACTAAACGACTGGACGATGACTGTGCAAAGGCTATAGCAGCTGGAATGATGCATGGTTTACAGCATCTCGTGCTTTCAGGGATTCATCTTTCTAACGATGCCTTGGAAGATATTATTAATTATAGTTGTCATCCGGAGTCACTTGATCTGAGCAATATTTCCATTTGGACATTGGATGGACGTCGTGACACCTTTAGAGAAGATTTGAAAAGAAAGTTGACTGAACATGTTAAAAATGTAAGGCCTCCTCCTACTGATCTGTACTGTCGCTATAGAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

195

Amino Acids

22.1

Weight (kDa)

8.98

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 490
AccBSI CCGCTC 1 cut(s) 160
AccII CGCG 1 cut(s) 12
AccIII TCCGGA 1 cut(s) 439
AciI CCGC 4 cut(s) 7, 10, 64, 160
AcyI GRCGYC 1 cut(s) 487
AfaI GTAC 3 cut(s) 34, 92, 569
AfiI CCNNNNNNNGG 1 cut(s) 130
AflIII ACRYGT 1 cut(s) 532
AgsI TTSAA 3 cut(s) 271, 299, 514
AluBI AGCT 4 cut(s) 27, 82, 176, 347
AluI AGCT 4 cut(s) 27, 82, 176, 347
Alw26I GTCTC 2 cut(s) 229, 576
Aor13HI TCCGGA 1 cut(s) 439
AoxI GGCC 1 cut(s) 548
ApeKI GCWGC 1 cut(s) 344
AseI ATTAAT 1 cut(s) 423
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 199
AvaII GGWCC 1 cut(s) 199
BaeI ACNNNNGTAYC 2 cut(s) 24, 57
BauI CACGAG 1 cut(s) 374
BbvI GCAGC 1 cut(s) 356
BccI CCATC 2 cut(s) 276, 476
BceAI ACGGC 1 cut(s) 232
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BcoDI GTCTC 2 cut(s) 229, 576
BfmI CTRYAG 2 cut(s) 339, 577
BisI GCNGC 3 cut(s) 7, 10, 345
BlsI GCNGC 3 cut(s) 8, 11, 346
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 199
BmsI GCATC 3 cut(s) 345, 379, 394
BpmI CTGGAG 1 cut(s) 38
Bpu10I CCTNAGC 1 cut(s) 28
BpuEI CTTGAG 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 487
BsaJI CCNNGG 3 cut(s) 202, 237, 408
BsaWI WCCGGW 1 cut(s) 439
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 321
BseAI TCCGGA 1 cut(s) 439
BseDI CCNNGG 3 cut(s) 202, 237, 408
BseGI GGATG 2 cut(s) 436, 487
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMII CTCAG 3 cut(s) 42, 234, 446
BseNI ACTGG 1 cut(s) 321
BseRI GAGGAG 2 cut(s) 74, 543
BseXI GCAGC 1 cut(s) 356
Bsh1236I CGCG 1 cut(s) 12
BshFI GGCC 1 cut(s) 550
BsiSI CCGG 2 cut(s) 69, 440
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 2 cut(s) 229, 576
BsnI GGCC 1 cut(s) 550
Bsp13I TCCGGA 1 cut(s) 439
Bsp143I GATC 3 cut(s) 19, 451, 562
BspACI CCGC 4 cut(s) 7, 10, 64, 160
BspANI GGCC 1 cut(s) 550
BspCNI CTCAG 3 cut(s) 41, 233, 447
BspEI TCCGGA 1 cut(s) 439
BspFNI CGCG 1 cut(s) 12
BsrBI CCGCTC 1 cut(s) 160
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 1 cut(s) 321
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 3 cut(s) 202, 237, 408
BssMI GATC 3 cut(s) 19, 451, 562
BssNI GRCGYC 1 cut(s) 487
BssSI CACGAG 1 cut(s) 374
BssT1I CCWWGG 2 cut(s) 202, 408
Bst2BI CACGAG 1 cut(s) 374
Bst4CI ACNGT 4 cut(s) 104, 238, 329, 572
BstACI GRCGYC 1 cut(s) 487
BstAPI GCANNNNNTGC 1 cut(s) 376
BstDEI CTNAG 3 cut(s) 28, 220, 455
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 2 cut(s) 436, 487
BstFNI CGCG 1 cut(s) 12
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 3 cut(s) 22, 454, 565
BstMAI GTCTC 2 cut(s) 229, 576
BstMBI GATC 3 cut(s) 19, 451, 562
BstMWI GCNNNNNNNGC 2 cut(s) 344, 376
BstNSI RCATGY 1 cut(s) 536
BstSFI CTRYAG 2 cut(s) 339, 577
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 356
BsuRI GGCC 1 cut(s) 550
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 2 cut(s) 436, 487
BtsIMutI CAGTG 1 cut(s) 72
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 199
Csp6I GTAC 3 cut(s) 33, 91, 568
CviAII CATG 2 cut(s) 359, 533
CviJI RGCY 7 cut(s) 27, 82, 176, 219, 338, 347, 550
CviKI_1 RGCY 7 cut(s) 27, 82, 176, 219, 338, 347, 550
CviQI GTAC 3 cut(s) 33, 91, 568
DdeI CTNAG 3 cut(s) 28, 220, 455
DpnI GATC 3 cut(s) 21, 453, 564
DpnII GATC 3 cut(s) 19, 451, 562
Eco130I CCWWGG 2 cut(s) 202, 408
Eco147I AGGCCT 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 199
EcoT14I CCWWGG 2 cut(s) 202, 408
EcoT22I ATGCAT 1 cut(s) 360
ErhI CCWWGG 2 cut(s) 202, 408
FaeI CATG 2 cut(s) 362, 536
FaiI YATR 5 cut(s) 341, 360, 429, 534, 579
FatI CATG 2 cut(s) 358, 532
Fnu4HI GCNGC 3 cut(s) 7, 10, 345
FokI GGATG 2 cut(s) 423, 494
Fsp4HI GCNGC 3 cut(s) 7, 10, 345
GlaI GCGC 1 cut(s) 13
GluI GCNGC 3 cut(s) 7, 10, 345
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 1 cut(s) 550
HapII CCGG 2 cut(s) 69, 440
HhaI GCGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 487
Hin1II CATG 2 cut(s) 362, 536
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HinfI GANTC 3 cut(s) 114, 388, 443
HpaII CCGG 2 cut(s) 69, 440
Hpy166II GTNNAC 2 cut(s) 365, 525
Hpy188I TCNGA 1 cut(s) 456
Hpy188III TCNNGA 3 cut(s) 55, 440, 491
Hpy8I GTNNAC 2 cut(s) 365, 525
Hpy99I CGWCG 1 cut(s) 492
HpyCH4III ACNGT 4 cut(s) 104, 238, 329, 572
HpyCH4IV ACGT 1 cut(s) 487
HpyCH4V TGCA 3 cut(s) 108, 332, 358
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 376
HpyF3I CTNAG 3 cut(s) 28, 220, 455
HpySE526I ACGT 1 cut(s) 487
Hsp92I GRCGYC 1 cut(s) 487
Hsp92II CATG 2 cut(s) 362, 536
HspAI GCGC 1 cut(s) 12
Kpn2I TCCGGA 1 cut(s) 439
Kzo9I GATC 3 cut(s) 19, 451, 562
LmnI GCTCC 1 cut(s) 87
LpnPI CCDG 7 cut(s) 15, 68, 82, 302, 333, 369, 453
Lsp1109I GCAGC 1 cut(s) 356
LweI GCATC 3 cut(s) 345, 379, 394
MaeII ACGT 1 cut(s) 487
MaeIII GTNAC 2 cut(s) 444, 491
MalI GATC 3 cut(s) 21, 453, 564
MbiI CCGCTC 1 cut(s) 160
MboI GATC 3 cut(s) 19, 451, 562
MboII GAAGA 2 cut(s) 425, 518
MluCI AATT 4 cut(s) 136, 246, 300, 424
MlyI GAGTC 1 cut(s) 452
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 7 cut(s) 95, 104, 159, 190, 273, 561, 564
Mph1103I ATGCAT 1 cut(s) 360
MroI TCCGGA 1 cut(s) 439
MseI TTAA 2 cut(s) 423, 537
MslI CAYNNNNRTG 1 cut(s) 280
MspA1I CMGCKG 1 cut(s) 347
MspI CCGG 2 cut(s) 69, 440
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 344, 376
NdeII GATC 3 cut(s) 19, 451, 562
NlaIII CATG 2 cut(s) 362, 536
NmuCI GTSAC 2 cut(s) 444, 491
NsiI ATGCAT 1 cut(s) 360
NspI RCATGY 1 cut(s) 536
PceI AGGCCT 1 cut(s) 550
PciI ACATGT 1 cut(s) 532
PfeI GAWTC 2 cut(s) 114, 388
PkrI GCNGC 3 cut(s) 8, 11, 346
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
PpuMI RGGWCCY 1 cut(s) 199
PscI ACATGT 1 cut(s) 532
PshBI ATTAAT 1 cut(s) 423
Psp5II RGGWCCY 1 cut(s) 199
PspPI GGNCC 1 cut(s) 199
PspPPI RGGWCCY 1 cut(s) 199
PvuII CAGCTG 1 cut(s) 347
RsaI GTAC 3 cut(s) 34, 92, 569
RsaNI GTAC 3 cut(s) 33, 91, 568
RseI CAYNNNNRTG 1 cut(s) 280
SaqAI TTAA 2 cut(s) 423, 537
SatI GCNGC 3 cut(s) 7, 10, 345
Sau3AI GATC 3 cut(s) 19, 451, 562
Sau96I GGNCC 1 cut(s) 199
SchI GAGTC 1 cut(s) 452
SetI ASST 8 cut(s) 29, 34, 84, 178, 204, 349, 490, 500
SfaNI GCATC 3 cut(s) 345, 379, 394
SfcI CTRYAG 2 cut(s) 339, 577
SinI GGWCC 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 280
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 4 cut(s) 136, 246, 300, 424
SseBI AGGCCT 1 cut(s) 550
SsiI CCGC 4 cut(s) 7, 10, 64, 160
SspI AATATT 2 cut(s) 295, 463
StuI AGGCCT 1 cut(s) 550
StyI CCWWGG 2 cut(s) 202, 408
TaaI ACNGT 4 cut(s) 104, 238, 329, 572
TaiI ACGT 1 cut(s) 490
TasI AATT 4 cut(s) 136, 246, 300, 424
TatI WGTACW 2 cut(s) 90, 567
TauI GCSGC 2 cut(s) 9, 12
TfiI GAWTC 2 cut(s) 114, 388
Tru1I TTAA 2 cut(s) 423, 537
Tru9I TTAA 2 cut(s) 423, 537
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 2 cut(s) 444, 491
TseI GCWGC 1 cut(s) 344
Tsp45I GTSAC 2 cut(s) 444, 491
TspDTI ATGAA 1 cut(s) 380
TspGWI ACGGA 1 cut(s) 177
TspRI CASTG 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 199
VspI ATTAAT 1 cut(s) 423
XceI RCATGY 1 cut(s) 536
XcmI CCANNNNNNNNNTGG 1 cut(s) 475
ZraI GACGTC 1 cut(s) 488
Zsp2I ATGCAT 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.