Rh5DG120400

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0014856
Physical Location & Seq
Reverse (-)
10879131 .. 10880434
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG120400.1

Sequence Viewer

Length: 729 bp
ATGGGAGAGTCTAAGAAGAGAAGAAAGGTAGAGTCAGAGTCTTCCTCTGCAACCGCCCAGGGCCGCCGAGACTGGACGGAGCTCCCGGACGACGTTACGGCGTGGATACTAGTACTGTCAAATCCGAAAGCAATTGATATCCTAAAAGAGTATCAGATGGTCTGCAAGACGTGGCGCAGAGTTTGCTGCAACTACTCTATTCTGTGGCGCACCATCGACATAGACTTCCTTCACAAAAAGGGCAAGTTGGACTCTGTACTGAAGATGTGCCGCCGCGCCGTTGATCGTAGCTCAGATGAGGGGTTGAGGGAAGTAGCTTCCAAACTTCCGTTGTTGGAGGACCTTGGCATTTCACACGGCTCAGTCTCGCAGAAAACCGTGGAAGTAATTGGGAAATCTTGCCCTCTTTTGAAATCATTGAGATGGAACAAAAATATTGAAATTGATACTAAACGACTGGATGATGACTGTGCAAAGGCTATAGCAGCTGGAATGATGCATGGTTTACAGCACCTCGTGCTTTCAGGGATTCATCTTTCTAACGATGCCTTGGATGATATTCTTAATTATAGTCGTCATCTGGAGTCACTTGATCTGAGCAATATTTCCATTTGGACATTGGACGGACGTCGTGATATCTTTAGAGAAGATTTGAAAAGAAAATTGACTGAACATGTTAAAAATGTAAGGCCTCCTCCTACTGATCTGTACTGTCGCTATAGAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

242

Amino Acids

27.79

Weight (kDa)

8.77

Isoelectric Point (pI)

57.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 631
AccII CGCG 1 cut(s) 276
AciI CCGC 4 cut(s) 54, 64, 271, 274
AcuI CTGAAG 1 cut(s) 281
AcyI GRCGYC 1 cut(s) 628
AdeI CACNNNGTG 1 cut(s) 517
AfaI GTAC 3 cut(s) 114, 258, 710
AflIII ACRYGT 1 cut(s) 673
AgsI TTSAA 3 cut(s) 412, 440, 655
AhlI ACTAGT 1 cut(s) 109
AjiI CACGTC 1 cut(s) 171
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 4 cut(s) 82, 291, 317, 488
AluI AGCT 4 cut(s) 82, 291, 317, 488
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 3 cut(s) 63, 370, 717
AoxI GGCC 2 cut(s) 61, 689
ApeKI GCWGC 2 cut(s) 186, 485
AspLEI GCGC 3 cut(s) 177, 210, 278
AspS9I GGNCC 2 cut(s) 61, 340
AsuC2I CCSGG 1 cut(s) 86
AvaII GGWCC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 84
BauI CACGAG 1 cut(s) 515
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 173, 497
BccI CCATC 3 cut(s) 151, 221, 417
BceAI ACGGC 3 cut(s) 114, 263, 373
BciT130I CCWGG 1 cut(s) 59
BciVI GTATCC 1 cut(s) 99
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 3 cut(s) 63, 370, 717
BcuI ACTAGT 1 cut(s) 109
BfaI CTAG 1 cut(s) 110
BfmI CTRYAG 2 cut(s) 480, 718
BfuI GTATCC 1 cut(s) 99
BisI GCNGC 5 cut(s) 64, 187, 271, 274, 486
BlsI GCNGC 5 cut(s) 65, 188, 272, 275, 487
BmcAI AGTACT 1 cut(s) 114
Bme1390I CCNGG 2 cut(s) 59, 86
Bme18I GGWCC 1 cut(s) 340
BmgBI CACGTC 1 cut(s) 171
BmgT120I GGNCC 2 cut(s) 61, 340
BmrFI CCNGG 2 cut(s) 59, 86
BmsI GCATC 2 cut(s) 486, 535
BoxI GACNNNNGTC 1 cut(s) 627
BpiI GAAGAC 1 cut(s) 33
BplI GAGNNNNNCTC 2 cut(s) 29, 61
BpmI CTGGAG 1 cut(s) 602
BpuMI CCSGG 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 628
BsaJI CCNNGG 5 cut(s) 57, 58, 343, 378, 549
Bse1I ACTGG 2 cut(s) 77, 462
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 5 cut(s) 57, 58, 343, 378, 549
BseGI GGATG 2 cut(s) 466, 559
BseMII CTCAG 3 cut(s) 306, 375, 587
BseNI ACTGG 2 cut(s) 77, 462
BseRI GAGGAG 1 cut(s) 684
BseXI GCAGC 2 cut(s) 173, 497
Bsh1236I CGCG 1 cut(s) 276
BshFI GGCC 2 cut(s) 63, 691
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 86
BsmAI GTCTC 3 cut(s) 63, 370, 717
BsnI GGCC 2 cut(s) 63, 691
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 3 cut(s) 283, 592, 703
BspACI CCGC 4 cut(s) 54, 64, 271, 274
BspANI GGCC 2 cut(s) 63, 691
BspCNI CTCAG 3 cut(s) 305, 374, 588
BspFNI CGCG 1 cut(s) 276
BsrI ACTGG 2 cut(s) 77, 462
BssECI CCNNGG 5 cut(s) 57, 58, 343, 378, 549
BssMI GATC 3 cut(s) 283, 592, 703
BssNI GRCGYC 1 cut(s) 628
BssSI CACGAG 1 cut(s) 515
BssT1I CCWWGG 2 cut(s) 343, 549
Bst2BI CACGAG 1 cut(s) 515
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 4 cut(s) 117, 379, 470, 713
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 628
BstAPI GCANNNNNTGC 2 cut(s) 183, 517
BstDEI CTNAG 4 cut(s) 12, 292, 361, 596
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 2 cut(s) 466, 559
BstFNI CGCG 1 cut(s) 276
BstHHI GCGC 3 cut(s) 177, 210, 278
BstKTI GATC 3 cut(s) 286, 595, 706
BstMAI GTCTC 3 cut(s) 63, 370, 717
BstMBI GATC 3 cut(s) 283, 592, 703
BstMWI GCNNNNNNNGC 3 cut(s) 183, 485, 517
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 677
BstPAI GACNNNNGTC 1 cut(s) 627
BstSCI CCNGG 2 cut(s) 57, 84
BstSFI CTRYAG 2 cut(s) 480, 718
BstUI CGCG 1 cut(s) 276
BstV1I GCAGC 2 cut(s) 173, 497
BstV2I GAAGAC 1 cut(s) 33
BsuI GTATCC 1 cut(s) 99
BsuRI GGCC 2 cut(s) 63, 691
BtgI CCRYGG 1 cut(s) 378
BtrI CACGTC 1 cut(s) 171
BtsCI GGATG 2 cut(s) 466, 559
CfoI GCGC 3 cut(s) 177, 210, 278
Cfr13I GGNCC 2 cut(s) 61, 340
Csp6I GTAC 3 cut(s) 113, 257, 709
CviAII CATG 2 cut(s) 500, 674
CviJI RGCY 8 cut(s) 63, 82, 291, 317, 360, 479, 488, 691
CviKI_1 RGCY 8 cut(s) 63, 82, 291, 317, 360, 479, 488, 691
CviQI GTAC 3 cut(s) 113, 257, 709
DdeI CTNAG 4 cut(s) 12, 292, 361, 596
DpnI GATC 3 cut(s) 285, 594, 705
DpnII GATC 3 cut(s) 283, 592, 703
DraIII CACNNNGTG 1 cut(s) 517
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 2 cut(s) 343, 549
Eco147I AGGCCT 1 cut(s) 691
Eco24I GRGCYC 1 cut(s) 84
Eco32I GATATC 2 cut(s) 139, 637
Eco47I GGWCC 1 cut(s) 340
Eco53kI GAGCTC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 82
EcoO109I RGGNCCY 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 57
EcoRV GATATC 2 cut(s) 139, 637
EcoT14I CCWWGG 2 cut(s) 343, 549
EcoT22I ATGCAT 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 2 cut(s) 343, 549
FaeI CATG 2 cut(s) 503, 677
FaiI YATR 6 cut(s) 221, 482, 501, 570, 675, 720
FatI CATG 2 cut(s) 499, 673
Fnu4HI GCNGC 5 cut(s) 64, 187, 271, 274, 486
FokI GGATG 2 cut(s) 473, 566
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 5 cut(s) 64, 187, 271, 274, 486
FspBI CTAG 1 cut(s) 110
GlaI GCGC 3 cut(s) 176, 209, 277
GluI GCNGC 5 cut(s) 64, 187, 271, 274, 486
GsuI CTGGAG 1 cut(s) 602
HaeIII GGCC 2 cut(s) 63, 691
HapII CCGG 1 cut(s) 86
HhaI GCGC 3 cut(s) 177, 210, 278
Hin1I GRCGYC 1 cut(s) 628
Hin1II CATG 2 cut(s) 503, 677
Hin6I GCGC 3 cut(s) 175, 208, 276
HinP1I GCGC 3 cut(s) 175, 208, 276
HinfI GANTC 6 cut(s) 8, 32, 38, 251, 529, 584
HpaII CCGG 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 506
Hpy188I TCNGA 5 cut(s) 37, 126, 156, 295, 597
Hpy188III TCNNGA 2 cut(s) 581, 632
Hpy8I GTNNAC 1 cut(s) 506
Hpy99I CGWCG 2 cut(s) 95, 633
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 4 cut(s) 117, 379, 470, 713
HpyCH4IV ACGT 3 cut(s) 93, 170, 628
HpyCH4V TGCA 5 cut(s) 50, 165, 189, 473, 499
HpyF10VI GCNNNNNNNGC 3 cut(s) 183, 485, 517
HpyF3I CTNAG 4 cut(s) 12, 292, 361, 596
HpySE526I ACGT 3 cut(s) 93, 170, 628
Hsp92I GRCGYC 1 cut(s) 628
Hsp92II CATG 2 cut(s) 503, 677
HspAI GCGC 3 cut(s) 175, 208, 276
Kzo9I GATC 3 cut(s) 283, 592, 703
LmnI GCTCC 2 cut(s) 79, 87
LpnPI CCDG 8 cut(s) 44, 58, 71, 99, 443, 474, 510, 566
Lsp1109I GCAGC 2 cut(s) 173, 497
LweI GCATC 2 cut(s) 486, 535
MaeI CTAG 1 cut(s) 110
MaeII ACGT 3 cut(s) 93, 170, 628
MaeIII GTNAC 2 cut(s) 94, 585
MalI GATC 3 cut(s) 285, 594, 705
MboI GATC 3 cut(s) 283, 592, 703
MboII GAAGA 5 cut(s) 28, 33, 33, 274, 659
MfeI CAATTG 1 cut(s) 132
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 5 cut(s) 132, 387, 441, 565, 662
MlyI GAGTC 5 cut(s) 17, 41, 47, 245, 593
MmeI TCCRAC 2 cut(s) 228, 315
MnlI CCTC 8 cut(s) 55, 292, 300, 331, 414, 524, 702, 705
Mph1103I ATGCAT 1 cut(s) 501
MseI TTAA 2 cut(s) 564, 678
MslI CAYNNNNRTG 1 cut(s) 421
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 2 cut(s) 59, 86
MunI CAATTG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 59
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 3 cut(s) 183, 485, 517
NciI CCSGG 1 cut(s) 86
NdeII GATC 3 cut(s) 283, 592, 703
NlaIII CATG 2 cut(s) 503, 677
NmeAIII GCCGAG 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 585
NsiI ATGCAT 1 cut(s) 501
NspI RCATGY 1 cut(s) 677
PasI CCCWGGG 1 cut(s) 58
PceI AGGCCT 1 cut(s) 691
PciI ACATGT 1 cut(s) 673
PfeI GAWTC 1 cut(s) 529
PfoI TCCNGGA 1 cut(s) 84
PkrI GCNGC 5 cut(s) 65, 188, 272, 275, 487
PleI GAGTC 5 cut(s) 16, 40, 46, 245, 592
PpsI GAGTC 5 cut(s) 16, 40, 46, 245, 592
PpuMI RGGWCCY 1 cut(s) 340
PscI ACATGT 1 cut(s) 673
PshAI GACNNNNGTC 1 cut(s) 627
Psp124BI GAGCTC 1 cut(s) 84
Psp5II RGGWCCY 1 cut(s) 340
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspPI GGNCC 2 cut(s) 61, 340
PspPPI RGGWCCY 1 cut(s) 340
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 3 cut(s) 114, 258, 710
RsaNI GTAC 3 cut(s) 113, 257, 709
RseI CAYNNNNRTG 1 cut(s) 421
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 2 cut(s) 564, 678
SatI GCNGC 5 cut(s) 64, 187, 271, 274, 486
Sau3AI GATC 3 cut(s) 283, 592, 703
Sau96I GGNCC 2 cut(s) 61, 340
ScaI AGTACT 1 cut(s) 114
SchI GAGTC 5 cut(s) 17, 41, 47, 245, 593
ScrFI CCNGG 2 cut(s) 59, 86
SduI GDGCHC 1 cut(s) 84
SfaNI GCATC 2 cut(s) 486, 535
SfcI CTRYAG 2 cut(s) 480, 718
SinI GGWCC 1 cut(s) 340
SmiMI CAYNNNNRTG 1 cut(s) 421
SpeI ACTAGT 1 cut(s) 109
Sse9I AATT 5 cut(s) 132, 387, 441, 565, 662
SseBI AGGCCT 1 cut(s) 691
SsiI CCGC 4 cut(s) 54, 64, 271, 274
SspI AATATT 2 cut(s) 436, 604
SspMI CTAG 1 cut(s) 110
SstI GAGCTC 1 cut(s) 84
StuI AGGCCT 1 cut(s) 691
StyD4I CCNGG 2 cut(s) 57, 84
StyI CCWWGG 2 cut(s) 343, 549
TaaI ACNGT 4 cut(s) 117, 379, 470, 713
TaiI ACGT 3 cut(s) 96, 173, 631
TaqI TCGA 1 cut(s) 216
TasI AATT 5 cut(s) 132, 387, 441, 565, 662
TatI WGTACW 3 cut(s) 112, 256, 708
TauI GCSGC 3 cut(s) 66, 273, 276
TfiI GAWTC 1 cut(s) 529
Tru1I TTAA 2 cut(s) 564, 678
Tru9I TTAA 2 cut(s) 564, 678
TseFI GTSAC 1 cut(s) 585
TseI GCWGC 2 cut(s) 186, 485
Tsp45I GTSAC 1 cut(s) 585
TspDTI ATGAA 1 cut(s) 521
TspGWI ACGGA 3 cut(s) 92, 318, 639
VpaK11BI GGWCC 1 cut(s) 340
XceI RCATGY 1 cut(s) 677
XcmI CCANNNNNNNNNTGG 1 cut(s) 616
XspI CTAG 1 cut(s) 110
ZraI GACGTC 1 cut(s) 629
ZrmI AGTACT 1 cut(s) 114
Zsp2I ATGCAT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.